RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 ATP6V1AP38606 617 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 HYPKQ9NX55 129 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 USP31Q70CQ4 1352 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 DDX46Q7L014 1031 aaKnown RBP10.19□□□□□ -0.78
CLIP1-218ENST00000545889 BEGAINQ9BUH8 593 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 TEX13AQ9BXU3 409 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-218ENST00000545889 SLC52A2Q9HAB3 445 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 HIP1O00291 1037 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 MEIS3Q99687 375 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 FEZ1Q99689 392 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 CARD10Q9BWT7 1032 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 IL1RAPL2Q9NP60 686 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 CD163L1Q9NR16 1453 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 POLR3DP05423 398 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-218ENST00000545889 SCLT1Q96NL6 688 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 ZNF287Q9HBT7 754 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 LRRFIP2Q9Y608 721 aaKnown RBP10.18□□□□□ -0.78
CLIP1-218ENST00000545889 MYO1BO43795 1136 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 ZNF76P36508 570 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 USP5P45974 858 aa10.18□□□□□ -0.78
CLIP1-218ENST00000545889 DZIP1Q86YF9 867 aaKnown RBP10.18□□□□□ -0.78
CLIP1-218ENST00000545889 SMAP1Q8IYB5 467 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-218ENST00000545889 A1BGP04217 495 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 NBPF5PQ86XG9 351 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-218ENST00000545889 OVOS2A0A0J9YW53 1432 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 OVOS2Q6IE36 1432 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 TXLNAP40222 546 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 ST5P78524 1137 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 CCDC73Q6ZRK6 1079 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 ANKRD13DQ6ZTN6 518 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 JDP2Q8WYK2 163 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 SMARCC1Q92922 1105 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-218ENST00000545889 RTL1A6NKG5 1358 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 MST1RQ04912 1400 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 A0A087WZG4 1122 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 TRIM22Q8IYM9 498 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 NUP133Q8WUM0 1156 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 UBAC1Q9BSL1 405 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 ZHX3Q9H4I2 956 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 PCDHB15Q9Y5E8 787 aa10.17□□□□□ -0.78
CLIP1-218ENST00000545889 HSPA1LP34931 641 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 NF2P35240 595 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 STK32BQ9NY57 414 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 ZNF521Q96K83 1311 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 SLF2Q8IX21 1173 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 OGFOD1Q8N543 542 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 PRAMEF22A3QJZ6 481 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 SMARCA5O60264 1052 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-218ENST00000545889 EIF4A1P60842 406 aaKnown RBP10.16□□□□□ -0.78
CLIP1-218ENST00000545889 IFIT5Q13325 482 aaKnown RBP10.16□□□□□ -0.78
CLIP1-218ENST00000545889 CWF19L2Q2TBE0 894 aaKnown RBP10.16□□□□□ -0.78
CLIP1-218ENST00000545889 UBE3BQ7Z3V4 1068 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 USP16Q9Y5T5 823 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 PNPLA6Q8IY17 1366 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 PTPRCP08575 1304 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 MED14O60244 1454 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 CYP27B1O15528 508 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 IGHDP01880 384 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 DNAJC10Q8IXB1 793 aa10.16□□□□□ -0.78
CLIP1-218ENST00000545889 QTRT2Q9H974 415 aaKnown RBP10.15□□□□□ -0.78
CLIP1-218ENST00000545889 MKNK2Q9HBH9 465 aa10.15□□□□□ -0.78
CLIP1-218ENST00000545889 IFT172Q9UG01 1749 aa10.15□□□□□ -0.78
CLIP1-218ENST00000545889 NASPP49321 788 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-218ENST00000545889 SOS2Q07890 1332 aaPredicted RBP10.15□□□□□ -0.79
CLIP1-218ENST00000545889 KCNQ4P56696 695 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 IRX3P78415 501 aaPredicted RBP10.14□□□□□ -0.79
CLIP1-218ENST00000545889 AIDAQ96BJ3 306 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 CDC5LQ99459 802 aaKnown RBP10.14□□□□□ -0.79
CLIP1-218ENST00000545889 ASAP1Q9ULH1 1129 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 BAG6P46379 1132 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 PPP1R42Q7Z4L9 355 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 PRDM4Q9UKN5 801 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 DDX49Q9Y6V7 483 aaKnown RBP10.14□□□□□ -0.79
CLIP1-218ENST00000545889 ADAMTSL3P82987 1691 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 DDX11L8A8MPP1 907 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 CCAR2Q8N163 923 aaKnown RBP10.14□□□□□ -0.79
CLIP1-218ENST00000545889 KIF24Q5T7B8 1368 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 ZSCAN30Q86W11 494 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 CERS3Q8IU89 383 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 SDF4Q9BRK5 362 aa10.14□□□□□ -0.79
CLIP1-218ENST00000545889 CCDC69A6NI79 296 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 NAP1L1P55209 391 aaKnown RBP10.13□□□□□ -0.79
CLIP1-218ENST00000545889 AACSQ86V21 672 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 CDCA7Q9BWT1 371 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-218ENST00000545889 AKAP2Q9Y2D5 859 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 USP19O94966 1318 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 MCM4P33991 863 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 RPAP2Q8IXW5 612 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-218ENST00000545889 GOLGA6L1Q8N7Z2 621 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 SETDB2Q96T68 719 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 PARP3Q9Y6F1 533 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 SSBP05455 408 aaKnown RBP eCLIP10.13□□□□□ -0.79
CLIP1-218ENST00000545889 TRERF1Q96PN7 1200 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 GIGYF1O75420 1035 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-218ENST00000545889 MAP4K4O95819 1239 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-218ENST00000545889 KSR2Q6VAB6 950 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 ARHGAP45Q92619 1136 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 DDX21Q9NR30 783 aaKnown RBP eCLIP10.13□□□□□ -0.79
CLIP1-218ENST00000545889 HDAC9Q9UKV0 1011 aa10.13□□□□□ -0.79
CLIP1-218ENST00000545889 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms