RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 NLRP10Q86W26 655 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 C8orf58Q8NAV2 365 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 TAOK3Q9H2K8 898 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 TIAM2Q8IVF5 1701 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 KDM2BQ8NHM5 1336 aa17.05■□□□□ 0.32
TNFRSF1A-215ENST00000543359 GLTPD2A6NH11 291 aa17.05■□□□□ 0.32
TNFRSF1A-215ENST00000543359 ANP32CO43423 234 aa17.05■□□□□ 0.32
TNFRSF1A-215ENST00000543359 CALD1Q05682 793 aaKnown RBP17.05■□□□□ 0.32
TNFRSF1A-215ENST00000543359 SOGA3Q5TF21 947 aa17.05■□□□□ 0.32
TNFRSF1A-215ENST00000543359 RRAGCQ9HB90 399 aa17.05■□□□□ 0.32
TNFRSF1A-215ENST00000543359 DBF4Q9UBU7 674 aaPredicted RBP17.05■□□□□ 0.32
TNFRSF1A-215ENST00000543359 NCBP3Q53F19 620 aaKnown RBP17.04■□□□□ 0.32
TNFRSF1A-215ENST00000543359 PPP1R42Q7Z4L9 355 aa17.04■□□□□ 0.32
TNFRSF1A-215ENST00000543359 UTP14AQ9BVJ6 771 aaKnown RBP17.04■□□□□ 0.32
TNFRSF1A-215ENST00000543359 MRS2Q9HD23 443 aa17.04■□□□□ 0.32
TNFRSF1A-215ENST00000543359 POTECB2RU33 542 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 CCDC93Q567U6 631 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 HSP90AB3PQ58FF7 597 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 ANKRD13DQ6ZTN6 518 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 WWC1Q8IX03 1113 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 SYNE4Q8N205 404 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 PLBD2Q8NHP8 589 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 ISCA1Q9BUE6 129 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 HYPKQ9NX55 129 aa17.03■□□□□ 0.32
TNFRSF1A-215ENST00000543359 ELL2O00472 640 aaPredicted RBP17.02■□□□□ 0.32
TNFRSF1A-215ENST00000543359 HSPA6P17066 643 aa17.02■□□□□ 0.32
TNFRSF1A-215ENST00000543359 SLC51AQ86UW1 340 aa17.02■□□□□ 0.32
TNFRSF1A-215ENST00000543359 CRAMP1Q96RY5 1269 aa17.02■□□□□ 0.32
TNFRSF1A-215ENST00000543359 RNF123Q5XPI4 1314 aa17.01■□□□□ 0.31
TNFRSF1A-215ENST00000543359 FKBP4Q02790 459 aaKnown RBP eCLIP17.01■□□□□ 0.31
TNFRSF1A-215ENST00000543359 TSPYL6Q8N831 410 aa17.01■□□□□ 0.31
TNFRSF1A-215ENST00000543359 RBM46Q8TBY0 533 aaKnown RBP17.01■□□□□ 0.31
TNFRSF1A-215ENST00000543359 RTKN2Q8IZC4 609 aa17■□□□□ 0.31
TNFRSF1A-215ENST00000543359 RPGRQ92834 1020 aaKnown RBP17■□□□□ 0.31
TNFRSF1A-215ENST00000543359 NLRP3Q96P20 1036 aa17■□□□□ 0.31
TNFRSF1A-215ENST00000543359 PCNTO95613 3336 aa17■□□□□ 0.31
TNFRSF1A-215ENST00000543359 LAMB2P55268 1798 aa17■□□□□ 0.31
TNFRSF1A-215ENST00000543359 WDR90Q96KV7 1748 aa16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 HCLS1P14317 486 aaPredicted RBP16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 TRIM28Q13263 835 aaKnown RBP16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 TSR2Q969E8 191 aaKnown RBP16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 RBM17Q96I25 401 aaKnown RBP16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 PHAXQ9H814 394 aaKnown RBP16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 ZNF277Q9NRM2 450 aaPredicted RBP16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 TRMT112Q9UI30 125 aaKnown RBP16.99■□□□□ 0.31
TNFRSF1A-215ENST00000543359 IL16Q14005 1332 aa16.98■□□□□ 0.31
TNFRSF1A-215ENST00000543359 CC2D2BQ6DHV5 1058 aa16.98■□□□□ 0.31
TNFRSF1A-215ENST00000543359 PSMD1Q99460 953 aa16.98■□□□□ 0.31
TNFRSF1A-215ENST00000543359 ATP5J2-PTCD1G3V325 749 aa16.97■□□□□ 0.31
TNFRSF1A-215ENST00000543359 VEGFAP15692 232 aaPredicted RBP16.97■□□□□ 0.31
TNFRSF1A-215ENST00000543359 ZNF428Q96B54 188 aa16.97■□□□□ 0.31
TNFRSF1A-215ENST00000543359 ABCC4O15439 1325 aa16.96■□□□□ 0.31
TNFRSF1A-215ENST00000543359 SH3TC1Q8TE82 1336 aa16.96■□□□□ 0.31
TNFRSF1A-215ENST00000543359 DDX60Q8IY21 1712 aaKnown RBP16.96■□□□□ 0.31
TNFRSF1A-215ENST00000543359 DPY19L2Q6NUT2 758 aa16.96■□□□□ 0.31
TNFRSF1A-215ENST00000543359 COL4A5P29400 1685 aa16.95■□□□□ 0.3
TNFRSF1A-215ENST00000543359 PPEF1O14829 653 aaPredicted RBP16.95■□□□□ 0.3
TNFRSF1A-215ENST00000543359 DDNO94850 711 aaPredicted RBP16.95■□□□□ 0.3
TNFRSF1A-215ENST00000543359 IARSP41252 1262 aaKnown RBP16.95■□□□□ 0.3
TNFRSF1A-215ENST00000543359 FSTL1Q12841 308 aa16.95■□□□□ 0.3
TNFRSF1A-215ENST00000543359 ATP6V0A2Q9Y487 856 aa16.95■□□□□ 0.3
TNFRSF1A-215ENST00000543359 TAF1P21675 1872 aa16.95■□□□□ 0.3
TNFRSF1A-215ENST00000543359 FZD9O00144 591 aa16.94■□□□□ 0.3
TNFRSF1A-215ENST00000543359 GRIPAP1Q4V328 841 aa16.94■□□□□ 0.3
TNFRSF1A-215ENST00000543359 CCDC30Q5VVM6 783 aa16.94■□□□□ 0.3
TNFRSF1A-215ENST00000543359 C16orf71Q8IYS4 520 aaPredicted RBP16.94■□□□□ 0.3
TNFRSF1A-215ENST00000543359 FAM89AQ96GI7 184 aa16.94■□□□□ 0.3
TNFRSF1A-215ENST00000543359 BBOX1O75936 387 aa16.93■□□□□ 0.3
TNFRSF1A-215ENST00000543359 SF3B3Q15393 1217 aaKnown RBP16.93■□□□□ 0.3
TNFRSF1A-215ENST00000543359 RIC3Q7Z5B4 369 aa16.93■□□□□ 0.3
TNFRSF1A-215ENST00000543359 WDR63Q8IWG1 891 aa16.93■□□□□ 0.3
TNFRSF1A-215ENST00000543359 L3MBTL3Q96JM7 780 aaPredicted RBP16.93■□□□□ 0.3
TNFRSF1A-215ENST00000543359 SPINK5Q9NQ38 1064 aaPredicted RBP16.93■□□□□ 0.3
TNFRSF1A-215ENST00000543359 ZNF541Q9H0D2 1346 aa16.93■□□□□ 0.3
TNFRSF1A-215ENST00000543359 TCERG1O14776 1098 aaKnown RBP16.92■□□□□ 0.3
TNFRSF1A-215ENST00000543359 APLP1P51693 650 aa16.92■□□□□ 0.3
TNFRSF1A-215ENST00000543359 GOLGA2Q08379 1002 aa16.92■□□□□ 0.3
TNFRSF1A-215ENST00000543359 SP8Q8IXZ3 490 aa16.92■□□□□ 0.3
TNFRSF1A-215ENST00000543359 DNAJC5GQ8N7S2 189 aa16.92■□□□□ 0.3
TNFRSF1A-215ENST00000543359 CHMP4AQ9BY43 222 aa16.92■□□□□ 0.3
TNFRSF1A-215ENST00000543359 FANCIQ9NVI1 1328 aa16.92■□□□□ 0.3
TNFRSF1A-215ENST00000543359 COL4A1P02462 1669 aa16.91■□□□□ 0.3
TNFRSF1A-215ENST00000543359 TWISTNBQ3B726 338 aaPredicted RBP16.91■□□□□ 0.3
TNFRSF1A-215ENST00000543359 G2E3Q7L622 706 aa16.91■□□□□ 0.3
TNFRSF1A-215ENST00000543359 MYD88Q99836 296 aa16.91■□□□□ 0.3
TNFRSF1A-215ENST00000543359 METTL22Q9BUU2 404 aaPredicted RBP16.91■□□□□ 0.3
TNFRSF1A-215ENST00000543359 RTFDC1Q9BY42 306 aaPredicted RBP16.91■□□□□ 0.3
TNFRSF1A-215ENST00000543359 SALL2Q9Y467 1007 aaPredicted RBP16.91■□□□□ 0.3
TNFRSF1A-215ENST00000543359 GRAPQ13588 217 aa16.9■□□□□ 0.3
TNFRSF1A-215ENST00000543359 DDX46Q7L014 1031 aaKnown RBP16.9■□□□□ 0.3
TNFRSF1A-215ENST00000543359 FAM9BQ8IZU0 186 aa16.9■□□□□ 0.3
TNFRSF1A-215ENST00000543359 ZBTB38Q8NAP3 1195 aaPredicted RBP16.9■□□□□ 0.3
TNFRSF1A-215ENST00000543359 SMC1BQ8NDV3 1235 aa16.9■□□□□ 0.3
TNFRSF1A-215ENST00000543359 GRAPLQ8TC17 118 aaPredicted RBP16.9■□□□□ 0.3
TNFRSF1A-215ENST00000543359 SCN4AP35499 1836 aa16.89■□□□□ 0.29
TNFRSF1A-215ENST00000543359 IRS4O14654 1257 aaPredicted RBP16.89■□□□□ 0.29
TNFRSF1A-215ENST00000543359 VAMP4O75379 141 aa16.89■□□□□ 0.29
TNFRSF1A-215ENST00000543359 POTEIP0CG38 1075 aa16.89■□□□□ 0.29
TNFRSF1A-215ENST00000543359 POTEJP0CG39 1038 aa16.89■□□□□ 0.29
TNFRSF1A-215ENST00000543359 RTL5Q5HYW3 569 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms