RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 SRCIN1Q9C0H9 1055 aa15.43■□□□□ 0.06
DDX55-210ENST00000543016 PDZRN3Q9UPQ7 1066 aa15.43■□□□□ 0.06
DDX55-210ENST00000543016 PXDNLA1KZ92 1463 aa15.43■□□□□ 0.06
DDX55-210ENST00000543016 NEURL1BA8MQ27 555 aa15.42■□□□□ 0.06
DDX55-210ENST00000543016 F6X3S4 739 aa15.42■□□□□ 0.06
DDX55-210ENST00000543016 GTF2E1P29083 439 aaPredicted RBP15.42■□□□□ 0.06
DDX55-210ENST00000543016 ST5P78524 1137 aa15.42■□□□□ 0.06
DDX55-210ENST00000543016 CNBD1Q8NA66 436 aa15.42■□□□□ 0.06
DDX55-210ENST00000543016 UBN2Q6ZU65 1347 aa15.42■□□□□ 0.06
DDX55-210ENST00000543016 ATP5J2-PTCD1G3V325 749 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 NPHP1O15259 732 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 IGKV5-2P06315 115 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 TRIM27P14373 513 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 SUSD4Q5VX71 490 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 SLC4A10Q6U841 1118 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 ZBTB38Q8NAP3 1195 aaPredicted RBP15.41■□□□□ 0.06
DDX55-210ENST00000543016 CD2APQ9Y5K6 639 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 ARFGEF2Q9Y6D5 1785 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 ABCC4O15439 1325 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 SH3TC1Q8TE82 1336 aa15.41■□□□□ 0.06
DDX55-210ENST00000543016 NTSR2O95665 410 aa15.4■□□□□ 0.06
DDX55-210ENST00000543016 PCCAP05165 728 aaPredicted RBP15.4■□□□□ 0.06
DDX55-210ENST00000543016 GCKRQ14397 625 aa15.4■□□□□ 0.06
DDX55-210ENST00000543016 SLC10A5Q5PT55 438 aa15.4■□□□□ 0.06
DDX55-210ENST00000543016 INTS3Q68E01 1043 aaKnown RBP15.4■□□□□ 0.06
DDX55-210ENST00000543016 PRR5LQ6MZQ0 368 aa15.4■□□□□ 0.06
DDX55-210ENST00000543016 BRIP1Q9BX63 1249 aa15.4■□□□□ 0.06
DDX55-210ENST00000543016 TRMT112Q9UI30 125 aaKnown RBP15.4■□□□□ 0.06
DDX55-210ENST00000543016 HDAC5Q9UQL6 1122 aa15.4■□□□□ 0.06
DDX55-210ENST00000543016 PDE3AQ14432 1141 aa15.39■□□□□ 0.05
DDX55-210ENST00000543016 FTSJ3Q8IY81 847 aaKnown RBP15.39■□□□□ 0.05
DDX55-210ENST00000543016 DZIP1LQ8IYY4 767 aaKnown RBP15.39■□□□□ 0.05
DDX55-210ENST00000543016 PPP1R1BQ9UD71 204 aaPredicted RBP15.39■□□□□ 0.05
DDX55-210ENST00000543016 ANKRD36CQ5JPF3 1778 aa15.39■□□□□ 0.05
DDX55-210ENST00000543016 RIC1Q4ADV7 1423 aa15.38■□□□□ 0.05
DDX55-210ENST00000543016 H7C1W4 665 aa15.38■□□□□ 0.05
DDX55-210ENST00000543016 PDE6BP35913 854 aa15.38■□□□□ 0.05
DDX55-210ENST00000543016 CWF19L2Q2TBE0 894 aaKnown RBP15.38■□□□□ 0.05
DDX55-210ENST00000543016 CDHR2Q9BYE9 1310 aa15.38■□□□□ 0.05
DDX55-210ENST00000543016 LRP5O75197 1615 aa15.37■□□□□ 0.05
DDX55-210ENST00000543016 TGFB2P61812 414 aa15.37■□□□□ 0.05
DDX55-210ENST00000543016 CHMP4BQ9H444 224 aaKnown RBP15.37■□□□□ 0.05
DDX55-210ENST00000543016 C9orf78Q9NZ63 289 aaPredicted RBP15.37■□□□□ 0.05
DDX55-210ENST00000543016 NRXN2Q9P2S2 1712 aa15.37■□□□□ 0.05
DDX55-210ENST00000543016 C10orf71Q711Q0 1435 aa15.36■□□□□ 0.05
DDX55-210ENST00000543016 KLRG2A4D1S0 409 aaPredicted RBP15.36■□□□□ 0.05
DDX55-210ENST00000543016 FAM177BA6PVY3 158 aa15.36■□□□□ 0.05
DDX55-210ENST00000543016 GRM8O00222 908 aa15.36■□□□□ 0.05
DDX55-210ENST00000543016 CENPBP07199 599 aaPredicted RBP15.36■□□□□ 0.05
DDX55-210ENST00000543016 UTYO14607 1347 aa15.36■□□□□ 0.05
DDX55-210ENST00000543016 ERFEQ4G0M1 354 aa15.35■□□□□ 0.05
DDX55-210ENST00000543016 FAM89AQ96GI7 184 aa15.35■□□□□ 0.05
DDX55-210ENST00000543016 NLRP3Q96P20 1036 aa15.35■□□□□ 0.05
DDX55-210ENST00000543016 PLA2G12BQ9BX93 195 aa15.35■□□□□ 0.05
DDX55-210ENST00000543016 IRS4O14654 1257 aaPredicted RBP15.34■□□□□ 0.05
DDX55-210ENST00000543016 GNAI3P08754 354 aa15.34■□□□□ 0.05
DDX55-210ENST00000543016 RRP1P56182 461 aaKnown RBP15.34■□□□□ 0.05
DDX55-210ENST00000543016 NUTM1Q86Y26 1132 aa15.34■□□□□ 0.05
DDX55-210ENST00000543016 CLUAP1Q96AJ1 413 aa15.34■□□□□ 0.05
DDX55-210ENST00000543016 H0YIN7 160 aa15.33■□□□□ 0.04
DDX55-210ENST00000543016 PDE8AO60658 829 aa15.33■□□□□ 0.04
DDX55-210ENST00000543016 UBE3BQ7Z3V4 1068 aa15.33■□□□□ 0.04
DDX55-210ENST00000543016 TMEM57Q8N5G2 664 aa15.33■□□□□ 0.04
DDX55-210ENST00000543016 USP44Q9H0E7 712 aa15.33■□□□□ 0.04
DDX55-210ENST00000543016 AFDNP55196 1824 aaKnown RBP15.33■□□□□ 0.04
DDX55-210ENST00000543016 CASP7P55210 303 aa15.32■□□□□ 0.04
DDX55-210ENST00000543016 SF3B3Q15393 1217 aaKnown RBP15.32■□□□□ 0.04
DDX55-210ENST00000543016 CRY2Q49AN0 593 aa15.32■□□□□ 0.04
DDX55-210ENST00000543016 DDX19BQ9UMR2 479 aa15.32■□□□□ 0.04
DDX55-210ENST00000543016 PLIN1O60240 522 aa15.31■□□□□ 0.04
DDX55-210ENST00000543016 UBTFL1P0CB47 393 aaPredicted RBP15.31■□□□□ 0.04
DDX55-210ENST00000543016 NPR1P16066 1061 aa15.31■□□□□ 0.04
DDX55-210ENST00000543016 STYK1Q6J9G0 422 aa15.31■□□□□ 0.04
DDX55-210ENST00000543016 ITPRIPQ8IWB1 547 aa15.31■□□□□ 0.04
DDX55-210ENST00000543016 SYT17Q9BSW7 474 aa15.31■□□□□ 0.04
DDX55-210ENST00000543016 FHDC1Q9C0D6 1143 aaPredicted RBP15.31■□□□□ 0.04
DDX55-210ENST00000543016 ABCC12Q96J65 1359 aa15.31■□□□□ 0.04
DDX55-210ENST00000543016 SRGNP10124 158 aa15.3■□□□□ 0.04
DDX55-210ENST00000543016 RLBP1P12271 317 aa15.3■□□□□ 0.04
DDX55-210ENST00000543016 HCLS1P14317 486 aaPredicted RBP15.3■□□□□ 0.04
DDX55-210ENST00000543016 HOXA10P31260 410 aaPredicted RBP15.3■□□□□ 0.04
DDX55-210ENST00000543016 MVPQ14764 893 aaKnown RBP15.3■□□□□ 0.04
DDX55-210ENST00000543016 CCDC152Q4G0S7 254 aa15.3■□□□□ 0.04
DDX55-210ENST00000543016 N4BP2Q86UW6 1770 aaPredicted RBP15.3■□□□□ 0.04
DDX55-210ENST00000543016 C2CD5Q86YS7 1000 aa15.3■□□□□ 0.04
DDX55-210ENST00000543016 PANK1Q8TE04 598 aa15.3■□□□□ 0.04
DDX55-210ENST00000543016 MASTLQ96GX5 879 aa15.3■□□□□ 0.04
DDX55-210ENST00000543016 KIF13BQ9NQT8 1826 aa15.3■□□□□ 0.04
DDX55-210ENST00000543016 NBPF7P0C2Y1 421 aaPredicted RBP15.29■□□□□ 0.04
DDX55-210ENST00000543016 ALDH1B1P30837 517 aa15.29■□□□□ 0.04
DDX55-210ENST00000543016 CACNB1Q02641 598 aaPredicted RBP15.29■□□□□ 0.04
DDX55-210ENST00000543016 RTL5Q5HYW3 569 aaPredicted RBP15.29■□□□□ 0.04
DDX55-210ENST00000543016 SYNE4Q8N205 404 aa15.29■□□□□ 0.04
DDX55-210ENST00000543016 KLHL34Q8N239 644 aa15.29■□□□□ 0.04
DDX55-210ENST00000543016 RPGRQ92834 1020 aaKnown RBP15.29■□□□□ 0.04
DDX55-210ENST00000543016 CNKSR1Q969H4 720 aa15.29■□□□□ 0.04
DDX55-210ENST00000543016 RBM17Q96I25 401 aaKnown RBP15.29■□□□□ 0.04
DDX55-210ENST00000543016 CRAMP1Q96RY5 1269 aa15.29■□□□□ 0.04
DDX55-210ENST00000543016 TNNQ9UQP3 1299 aa15.29■□□□□ 0.04
DDX55-210ENST00000543016 RTL9Q8NET4 1388 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms