RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PLIN1O60240 522 aa21.68■■□□□ 1.06
LIG1-204ENST00000542460 ALDH1L1O75891 902 aa21.68■■□□□ 1.06
LIG1-204ENST00000542460 CENPBP07199 599 aaPredicted RBP21.68■■□□□ 1.06
LIG1-204ENST00000542460 UTP14AQ9BVJ6 771 aaKnown RBP21.68■■□□□ 1.06
LIG1-204ENST00000542460 FAM177BA6PVY3 158 aa21.67■■□□□ 1.06
LIG1-204ENST00000542460 FTSJ3Q8IY81 847 aaKnown RBP21.67■■□□□ 1.06
LIG1-204ENST00000542460 DZIP1LQ8IYY4 767 aaKnown RBP21.67■■□□□ 1.06
LIG1-204ENST00000542460 TRMT112Q9UI30 125 aaKnown RBP21.67■■□□□ 1.06
LIG1-204ENST00000542460 TNNQ9UQP3 1299 aa21.67■■□□□ 1.06
LIG1-204ENST00000542460 GCKRQ14397 625 aa21.66■■□□□ 1.06
LIG1-204ENST00000542460 IBTKQ9P2D0 1353 aaPredicted RBP21.66■■□□□ 1.06
LIG1-204ENST00000542460 RNF123Q5XPI4 1314 aa21.66■■□□□ 1.06
LIG1-204ENST00000542460 NPHP1O15259 732 aa21.65■■□□□ 1.06
LIG1-204ENST00000542460 NTSR2O95665 410 aa21.65■■□□□ 1.06
LIG1-204ENST00000542460 GTF2E1P29083 439 aaPredicted RBP21.65■■□□□ 1.06
LIG1-204ENST00000542460 RRP1P56182 461 aaKnown RBP21.65■■□□□ 1.06
LIG1-204ENST00000542460 INTS3Q68E01 1043 aaKnown RBP21.65■■□□□ 1.06
LIG1-204ENST00000542460 CNBD1Q8NA66 436 aa21.65■■□□□ 1.06
LIG1-204ENST00000542460 COL24A1Q17RW2 1714 aa21.65■■□□□ 1.06
LIG1-204ENST00000542460 ANKRD36CQ5JPF3 1778 aa21.64■■□□□ 1.05
LIG1-204ENST00000542460 PDE3AQ14432 1141 aa21.64■■□□□ 1.05
LIG1-204ENST00000542460 PRR5LQ6MZQ0 368 aa21.64■■□□□ 1.05
LIG1-204ENST00000542460 ZBTB38Q8NAP3 1195 aaPredicted RBP21.64■■□□□ 1.05
LIG1-204ENST00000542460 SH3TC1Q8TE82 1336 aa21.63■■□□□ 1.05
LIG1-204ENST00000542460 PCCAP05165 728 aaPredicted RBP21.62■■□□□ 1.05
LIG1-204ENST00000542460 RLBP1P12271 317 aa21.62■■□□□ 1.05
LIG1-204ENST00000542460 ST5P78524 1137 aa21.62■■□□□ 1.05
LIG1-204ENST00000542460 NUTM1Q86Y26 1132 aa21.62■■□□□ 1.05
LIG1-204ENST00000542460 TMEM57Q8N5G2 664 aa21.62■■□□□ 1.05
LIG1-204ENST00000542460 FAM89AQ96GI7 184 aa21.62■■□□□ 1.05
LIG1-204ENST00000542460 C9orf78Q9NZ63 289 aaPredicted RBP21.62■■□□□ 1.05
LIG1-204ENST00000542460 SUPT16HQ9Y5B9 1047 aaKnown RBP21.62■■□□□ 1.05
LIG1-204ENST00000542460 H7C1W4 665 aa21.61■■□□□ 1.05
LIG1-204ENST00000542460 ERFEQ4G0M1 354 aa21.61■■□□□ 1.05
LIG1-204ENST00000542460 PANK1Q8TE04 598 aa21.61■■□□□ 1.05
LIG1-204ENST00000542460 GRM8O00222 908 aa21.6■■□□□ 1.05
LIG1-204ENST00000542460 RTL5Q5HYW3 569 aaPredicted RBP21.6■■□□□ 1.05
LIG1-204ENST00000542460 SLC10A5Q5PT55 438 aa21.6■■□□□ 1.05
LIG1-204ENST00000542460 HSP90B1P14625 803 aaKnown RBP21.59■■□□□ 1.05
LIG1-204ENST00000542460 UBE3BQ7Z3V4 1068 aa21.59■■□□□ 1.05
LIG1-204ENST00000542460 ITPRIPQ8IWB1 547 aa21.59■■□□□ 1.05
LIG1-204ENST00000542460 SYNE4Q8N205 404 aa21.59■■□□□ 1.05
LIG1-204ENST00000542460 CCDC24Q8N4L8 307 aa21.59■■□□□ 1.05
LIG1-204ENST00000542460 BRIP1Q9BX63 1249 aa21.59■■□□□ 1.05
LIG1-204ENST00000542460 USP44Q9H0E7 712 aa21.59■■□□□ 1.05
LIG1-204ENST00000542460 NRXN2Q9P2S2 1712 aa21.58■■□□□ 1.05
LIG1-204ENST00000542460 IRS4O14654 1257 aaPredicted RBP21.58■■□□□ 1.04
LIG1-204ENST00000542460 C20orf194Q5TEA3 1177 aa21.58■■□□□ 1.04
LIG1-204ENST00000542460 JARID2Q92833 1246 aaPredicted RBP21.58■■□□□ 1.04
LIG1-204ENST00000542460 UTYO14607 1347 aa21.58■■□□□ 1.04
LIG1-204ENST00000542460 CDHR2Q9BYE9 1310 aa21.58■■□□□ 1.04
LIG1-204ENST00000542460 NBPF7P0C2Y1 421 aaPredicted RBP21.56■■□□□ 1.04
LIG1-204ENST00000542460 CASP7P55210 303 aa21.56■■□□□ 1.04
LIG1-204ENST00000542460 CD2APQ9Y5K6 639 aa21.56■■□□□ 1.04
LIG1-204ENST00000542460 ABCC12Q96J65 1359 aa21.56■■□□□ 1.04
LIG1-204ENST00000542460 C10orf71Q711Q0 1435 aa21.56■■□□□ 1.04
LIG1-204ENST00000542460 DCAF8L1A6NGE4 600 aa21.55■■□□□ 1.04
LIG1-204ENST00000542460 HCLS1P14317 486 aaPredicted RBP21.55■■□□□ 1.04
LIG1-204ENST00000542460 PDE6BP35913 854 aa21.55■■□□□ 1.04
LIG1-204ENST00000542460 MVPQ14764 893 aaKnown RBP21.55■■□□□ 1.04
LIG1-204ENST00000542460 NLRP3Q96P20 1036 aa21.55■■□□□ 1.04
LIG1-204ENST00000542460 COG6Q9Y2V7 657 aa21.55■■□□□ 1.04
LIG1-204ENST00000542460 AFDNP55196 1824 aaKnown RBP21.55■■□□□ 1.04
LIG1-204ENST00000542460 GNAI3P08754 354 aa21.55■■□□□ 1.04
LIG1-204ENST00000542460 FHDC1Q9C0D6 1143 aaPredicted RBP21.55■■□□□ 1.04
LIG1-204ENST00000542460 RIC1Q4ADV7 1423 aa21.54■■□□□ 1.04
LIG1-204ENST00000542460 PDE8AO60658 829 aa21.54■■□□□ 1.04
LIG1-204ENST00000542460 MEIS3Q99687 375 aa21.54■■□□□ 1.04
LIG1-204ENST00000542460 DDX19BQ9UMR2 479 aa21.54■■□□□ 1.04
LIG1-204ENST00000542460 HDAC5Q9UQL6 1122 aa21.54■■□□□ 1.04
LIG1-204ENST00000542460 KLRG2A4D1S0 409 aaPredicted RBP21.53■■□□□ 1.04
LIG1-204ENST00000542460 ZBTB7BO15156 539 aaPredicted RBP21.53■■□□□ 1.04
LIG1-204ENST00000542460 UBTFL1P0CB47 393 aaPredicted RBP21.53■■□□□ 1.04
LIG1-204ENST00000542460 KLHL34Q8N239 644 aa21.53■■□□□ 1.04
LIG1-204ENST00000542460 PLA2G12BQ9BX93 195 aa21.53■■□□□ 1.04
LIG1-204ENST00000542460 PDZRN3Q9UPQ7 1066 aa21.53■■□□□ 1.04
LIG1-204ENST00000542460 N4BP2Q86UW6 1770 aaPredicted RBP21.52■■□□□ 1.04
LIG1-204ENST00000542460 TGFB2P61812 414 aa21.52■■□□□ 1.04
LIG1-204ENST00000542460 CHMP4BQ9H444 224 aaKnown RBP21.52■■□□□ 1.04
LIG1-204ENST00000542460 SYT17Q9BSW7 474 aa21.51■■□□□ 1.03
LIG1-204ENST00000542460 H0YIN7 160 aa21.5■■□□□ 1.03
LIG1-204ENST00000542460 SF3B3Q15393 1217 aaKnown RBP21.5■■□□□ 1.03
LIG1-204ENST00000542460 CRY2Q49AN0 593 aa21.5■■□□□ 1.03
LIG1-204ENST00000542460 C3orf67Q6ZVT6 689 aa21.5■■□□□ 1.03
LIG1-204ENST00000542460 SUCLG2Q96I99 432 aa21.5■■□□□ 1.03
LIG1-204ENST00000542460 UTRNP46939 3433 aa21.49■■□□□ 1.03
LIG1-204ENST00000542460 CTSWP56202 376 aa21.49■■□□□ 1.03
LIG1-204ENST00000542460 FOXO4P98177 505 aa21.49■■□□□ 1.03
LIG1-204ENST00000542460 C2CD5Q86YS7 1000 aa21.49■■□□□ 1.03
LIG1-204ENST00000542460 KAZALD1Q96I82 304 aa21.49■■□□□ 1.03
LIG1-204ENST00000542460 GNAI2P04899 355 aa21.48■■□□□ 1.03
LIG1-204ENST00000542460 SRGNP10124 158 aa21.48■■□□□ 1.03
LIG1-204ENST00000542460 TTLL11Q8NHH1 800 aa21.48■■□□□ 1.03
LIG1-204ENST00000542460 CSF1RP07333 972 aa21.47■■□□□ 1.03
LIG1-204ENST00000542460 CHRNA5P30532 468 aa21.47■■□□□ 1.03
LIG1-204ENST00000542460 CCDC152Q4G0S7 254 aa21.47■■□□□ 1.03
LIG1-204ENST00000542460 EPHA10Q5JZY3 1008 aa21.47■■□□□ 1.03
LIG1-204ENST00000542460 RPGRQ92834 1020 aaKnown RBP21.47■■□□□ 1.03
LIG1-204ENST00000542460 BICC1Q9H694 974 aaKnown RBP21.47■■□□□ 1.03
LIG1-204ENST00000542460 LRRFIP2Q9Y608 721 aaKnown RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms