RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SKOR2Q2VWA4 1001 aaPredicted RBP9.64□□□□□ -0.87
PDLIM5-221ENST00000542407 PPP1R9BQ96SB3 815 aa9.64□□□□□ -0.87
PDLIM5-221ENST00000542407 CIZ1Q9ULV3 898 aaPredicted RBP9.64□□□□□ -0.87
PDLIM5-221ENST00000542407 DDX49Q9Y6V7 483 aaKnown RBP9.64□□□□□ -0.87
PDLIM5-221ENST00000542407 NFATC2IPQ8NCF5 419 aa9.64□□□□□ -0.87
PDLIM5-221ENST00000542407 USP44Q9H0E7 712 aa9.64□□□□□ -0.87
PDLIM5-221ENST00000542407 ANXA1P04083 346 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 TERF1P54274 439 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 SLC39A6Q13433 755 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 BEND3Q5T5X7 828 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 LARP1Q6PKG0 1096 aaKnown RBP9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 HS6ST3Q8IZP7 471 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 ZBTB9Q96C00 473 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 CGNQ9P2M7 1197 aaKnown RBP9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 DBF4Q9UBU7 674 aaPredicted RBP9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 GOLIM4O00461 696 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 GNAI2P04899 355 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 CBX1P83916 185 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 TOM1L2Q6ZVM7 507 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 PCDH11XQ9BZA7 1347 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 PCDH11YQ9BZA8 1340 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 KCPQ6ZWJ8 1503 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 WNK3Q9BYP7 1800 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 NBPF9Q3BBW0 867 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 BMP2KLQ5H9B9 411 aa9.63□□□□□ -0.87
PDLIM5-221ENST00000542407 DISP2A7MBM2 1401 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 GNAI3P08754 354 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 MAP2K1Q02750 393 aaPredicted RBP9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 LRP10Q7Z4F1 713 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 DNAAF4Q8WXU2 420 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 PI4KAP2A4QPH2 592 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 GOLGA6L22H0YM25 854 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 DYNC1I1O14576 645 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 PLEKHM2Q8IWE5 1019 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 PI4KAP1Q8N8J0 262 aa9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 ZNF496Q96IT1 587 aaPredicted RBP9.62□□□□□ -0.87
PDLIM5-221ENST00000542407 TUBGCP6Q96RT7 1819 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 TNS2Q63HR2 1409 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 LOC102724159A0A0B4J2E5 919 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 PNMA6EA0A0J9YXQ4 647 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 IL2RBP14784 551 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 PWP2Q15269 919 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 ZCRB1Q8TBF4 217 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 JARID2Q92833 1246 aaPredicted RBP9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 IBTKQ9P2D0 1353 aaPredicted RBP9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 ATP8B2P98198 1209 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 OTUD6BQ8N6M0 293 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 TSC1Q92574 1164 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 CCDC94Q9BW85 323 aaPredicted RBP9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 SRCIN1Q9C0H9 1055 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 DDX21Q9NR30 783 aaKnown RBP eCLIP9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 LRRFIP2Q9Y608 721 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 NRAPQ86VF7 1730 aa9.61□□□□□ -0.87
PDLIM5-221ENST00000542407 PHLPP1O60346 1717 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 GSPT1P15170 499 aaKnown RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 RNF217Q8TC41 542 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 SGSM3Q96HU1 749 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 HYPKQ9NX55 129 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 FOXD4L5Q5VV16 416 aaPredicted RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 C16orf71Q8IYS4 520 aaPredicted RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 OTUD7AQ8TE49 926 aaPredicted RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 FOXD4L4Q8WXT5 416 aaPredicted RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 NOL7Q9UMY1 257 aaKnown RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 SALL3Q9BXA9 1300 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 HMMRO75330 724 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 SSFA2P28290 1259 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 SATB1Q01826 763 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 MKRN3Q13064 507 aaKnown RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 CAVIN1Q6NZI2 390 aaKnown RBP9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 KSR2Q6VAB6 950 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 STRN4Q9NRL3 753 aa9.6□□□□□ -0.87
PDLIM5-221ENST00000542407 SMARCA5O60264 1052 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 NBPF7P0C2Y1 421 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 ARID4AP29374 1257 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 POLA2Q14181 598 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 HSP90AB4PQ58FF6 505 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 MAP3K2Q9Y2U5 619 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 ERVV-2B6SEH9 535 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 UBTFL1P0CB47 393 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 CABP4P57796 275 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 RAB3GAP1Q15042 981 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 CSPP1Q1MSJ5 1256 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 CASC1Q6TDU7 716 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 SASS6Q6UVJ0 657 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 SSH3Q8TE77 659 aa9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 ZBTB12Q9Y330 459 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-221ENST00000542407 LRP6O75581 1613 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 ARFGEF2Q9Y6D5 1785 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 SNRPA1P09661 255 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 BTG4Q9NY30 223 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 USP16Q9Y5T5 823 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 UTYO14607 1347 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 NUP188Q5SRE5 1749 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 FAM177BA6PVY3 158 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 ALDH1L1O75891 902 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 TTC22Q5TAA0 569 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 FMNL2Q96PY5 1086 aa9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-221ENST00000542407 CCDC96Q2M329 555 aa9.57□□□□□ -0.88
PDLIM5-221ENST00000542407 KCTD17Q8N5Z5 321 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms