RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 IBTKQ9P2D0 1353 aaPredicted RBP20.48■□□□□ 0.87
CLSTN3-213ENST00000541953 ANXA1P04083 346 aa20.48■□□□□ 0.87
CLSTN3-213ENST00000541953 ZNF34Q8IZ26 560 aa20.48■□□□□ 0.87
CLSTN3-213ENST00000541953 ALDH1B1P30837 517 aa20.47■□□□□ 0.87
CLSTN3-213ENST00000541953 EPHX2P34913 555 aa20.47■□□□□ 0.87
CLSTN3-213ENST00000541953 KIF6Q6ZMV9 814 aa20.47■□□□□ 0.87
CLSTN3-213ENST00000541953 PNISRQ8TF01 805 aaKnown RBP20.47■□□□□ 0.87
CLSTN3-213ENST00000541953 NYXQ9GZU5 481 aa20.47■□□□□ 0.87
CLSTN3-213ENST00000541953 HACL1Q9UJ83 578 aa20.47■□□□□ 0.87
CLSTN3-213ENST00000541953 ANKRD36CQ5JPF3 1778 aa20.46■□□□□ 0.87
CLSTN3-213ENST00000541953 TCERG1O14776 1098 aaKnown RBP20.46■□□□□ 0.87
CLSTN3-213ENST00000541953 HOXA10P31260 410 aaPredicted RBP20.46■□□□□ 0.87
CLSTN3-213ENST00000541953 PDIA6Q15084 440 aa20.46■□□□□ 0.87
CLSTN3-213ENST00000541953 MAP1SQ66K74 1059 aaPredicted RBP20.46■□□□□ 0.87
CLSTN3-213ENST00000541953 PSMD1Q99460 953 aa20.46■□□□□ 0.87
CLSTN3-213ENST00000541953 FMR1Q06787 632 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLSTN3-213ENST00000541953 FOXN1O15353 648 aa20.44■□□□□ 0.86
CLSTN3-213ENST00000541953 VEGFBP49765 207 aa20.44■□□□□ 0.86
CLSTN3-213ENST00000541953 CLEC11AQ9Y240 323 aa20.44■□□□□ 0.86
CLSTN3-213ENST00000541953 GIGYF2Q6Y7W6 1299 aaKnown RBP20.43■□□□□ 0.86
CLSTN3-213ENST00000541953 GPC2Q8N158 579 aa20.43■□□□□ 0.86
CLSTN3-213ENST00000541953 RPGRQ92834 1020 aaKnown RBP20.43■□□□□ 0.86
CLSTN3-213ENST00000541953 TSPYL4Q9UJ04 414 aa20.43■□□□□ 0.86
CLSTN3-213ENST00000541953 GJA3Q9Y6H8 435 aa20.43■□□□□ 0.86
CLSTN3-213ENST00000541953 MAPK8IP3Q9UPT6 1336 aa20.43■□□□□ 0.86
CLSTN3-213ENST00000541953 TAF1P21675 1872 aa20.43■□□□□ 0.86
CLSTN3-213ENST00000541953 NEFMP07197 916 aa20.42■□□□□ 0.86
CLSTN3-213ENST00000541953 EIF2S2P20042 333 aaKnown RBP20.42■□□□□ 0.86
CLSTN3-213ENST00000541953 SCNN1DP51172 638 aa20.42■□□□□ 0.86
CLSTN3-213ENST00000541953 TMEM88BA6NKF7 163 aa20.41■□□□□ 0.86
CLSTN3-213ENST00000541953 PPEF1O14829 653 aaPredicted RBP20.41■□□□□ 0.86
CLSTN3-213ENST00000541953 KRT24Q2M2I5 525 aa20.41■□□□□ 0.86
CLSTN3-213ENST00000541953 NECTIN2Q92692 538 aa20.41■□□□□ 0.86
CLSTN3-213ENST00000541953 ZNF428Q96B54 188 aa20.41■□□□□ 0.86
CLSTN3-213ENST00000541953 COL4A1P02462 1669 aa20.41■□□□□ 0.86
CLSTN3-213ENST00000541953 ERBB4Q15303 1308 aa20.4■□□□□ 0.86
CLSTN3-213ENST00000541953 CNTROBQ8N137 903 aa20.4■□□□□ 0.86
CLSTN3-213ENST00000541953 CRAMP1Q96RY5 1269 aa20.4■□□□□ 0.86
CLSTN3-213ENST00000541953 ABCC4O15439 1325 aa20.39■□□□□ 0.85
CLSTN3-213ENST00000541953 EPS15P42566 896 aa20.39■□□□□ 0.85
CLSTN3-213ENST00000541953 RIPK4P57078 832 aa20.39■□□□□ 0.85
CLSTN3-213ENST00000541953 JDP2Q8WYK2 163 aa20.39■□□□□ 0.85
CLSTN3-213ENST00000541953 CC2D2BQ6DHV5 1058 aa20.38■□□□□ 0.85
CLSTN3-213ENST00000541953 LARGE2Q8N3Y3 721 aa20.38■□□□□ 0.85
CLSTN3-213ENST00000541953 RBM17Q96I25 401 aaKnown RBP20.38■□□□□ 0.85
CLSTN3-213ENST00000541953 DUOX1Q9NRD9 1551 aa20.38■□□□□ 0.85
CLSTN3-213ENST00000541953 DDX60Q8IY21 1712 aaKnown RBP20.37■□□□□ 0.85
CLSTN3-213ENST00000541953 TMPOP42166 694 aaKnown RBP20.37■□□□□ 0.85
CLSTN3-213ENST00000541953 EIF6P56537 245 aaKnown RBP20.37■□□□□ 0.85
CLSTN3-213ENST00000541953 AOC3Q16853 763 aa20.37■□□□□ 0.85
CLSTN3-213ENST00000541953 PNMA8AQ86V59 439 aaPredicted RBP20.37■□□□□ 0.85
CLSTN3-213ENST00000541953 CCDC146Q8IYE0 955 aa20.37■□□□□ 0.85
CLSTN3-213ENST00000541953 THSD7BQ9C0I4 1608 aa20.37■□□□□ 0.85
CLSTN3-213ENST00000541953 RASSF10A6NK89 507 aa20.36■□□□□ 0.85
CLSTN3-213ENST00000541953 TRAF5O00463 557 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 PPIP5K2O43314 1243 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 HCLS1P14317 486 aaPredicted RBP20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 PARP10Q53GL7 1025 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 SLC10A5Q5PT55 438 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 COPS6Q7L5N1 327 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 PPP1R42Q7Z4L9 355 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 XAGE3Q8WTP9 111 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 UTP14AQ9BVJ6 771 aaKnown RBP20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 ATP6V0A2Q9Y487 856 aa20.35■□□□□ 0.85
CLSTN3-213ENST00000541953 AIMP1Q12904 312 aaKnown RBP20.34■□□□□ 0.85
CLSTN3-213ENST00000541953 NLRP10Q86W26 655 aa20.34■□□□□ 0.85
CLSTN3-213ENST00000541953 DDX21Q9NR30 783 aaKnown RBP eCLIP20.34■□□□□ 0.85
CLSTN3-213ENST00000541953 WBP1LQ9NX94 342 aa20.34■□□□□ 0.85
CLSTN3-213ENST00000541953 TRPM7Q96QT4 1865 aa20.34■□□□□ 0.85
CLSTN3-213ENST00000541953 LRRC37AA6NMS7 1700 aa20.33■□□□□ 0.85
CLSTN3-213ENST00000541953 NLRP3Q96P20 1036 aa20.33■□□□□ 0.85
CLSTN3-213ENST00000541953 NEUROD2Q15784 382 aa20.32■□□□□ 0.84
CLSTN3-213ENST00000541953 NIM1KQ8IY84 436 aa20.32■□□□□ 0.84
CLSTN3-213ENST00000541953 TRIM35Q9UPQ4 493 aa20.32■□□□□ 0.84
CLSTN3-213ENST00000541953 LMOD1P29536 600 aaPredicted RBP20.31■□□□□ 0.84
CLSTN3-213ENST00000541953 CXCL9Q07325 125 aa20.31■□□□□ 0.84
CLSTN3-213ENST00000541953 DEFB115Q30KQ5 88 aa20.31■□□□□ 0.84
CLSTN3-213ENST00000541953 CST9Q5W186 159 aa20.31■□□□□ 0.84
CLSTN3-213ENST00000541953 PNNQ9H307 717 aaKnown RBP20.31■□□□□ 0.84
CLSTN3-213ENST00000541953 ABT1Q9ULW3 272 aaKnown RBP20.31■□□□□ 0.84
CLSTN3-213ENST00000541953 WDR33Q9C0J8 1336 aaKnown RBP20.3■□□□□ 0.84
CLSTN3-213ENST00000541953 SHTN1A0MZ66 631 aa20.3■□□□□ 0.84
CLSTN3-213ENST00000541953 LBX1P52954 281 aa20.3■□□□□ 0.84
CLSTN3-213ENST00000541953 RTFDC1Q9BY42 306 aaPredicted RBP20.3■□□□□ 0.84
CLSTN3-213ENST00000541953 PRDM10Q9NQV6 1147 aa20.3■□□□□ 0.84
CLSTN3-213ENST00000541953 CHPF2Q9P2E5 772 aa20.3■□□□□ 0.84
CLSTN3-213ENST00000541953 HSPA8P11142 646 aaKnown RBP20.29■□□□□ 0.84
CLSTN3-213ENST00000541953 CTCFP49711 727 aaPredicted RBP20.29■□□□□ 0.84
CLSTN3-213ENST00000541953 BABAM1Q9NWV8 329 aa20.29■□□□□ 0.84
CLSTN3-213ENST00000541953 GPRC5DQ9NZD1 345 aa20.29■□□□□ 0.84
CLSTN3-213ENST00000541953 YDJCA8MPS7 323 aa20.28■□□□□ 0.84
CLSTN3-213ENST00000541953 CHL1O00533 1208 aa20.28■□□□□ 0.84
CLSTN3-213ENST00000541953 GMPSP49915 693 aaPredicted RBP20.28■□□□□ 0.84
CLSTN3-213ENST00000541953 TCIRG1Q13488 830 aa20.28■□□□□ 0.84
CLSTN3-213ENST00000541953 RALBP1Q15311 655 aa20.28■□□□□ 0.84
CLSTN3-213ENST00000541953 GRIPAP1Q4V328 841 aa20.28■□□□□ 0.84
CLSTN3-213ENST00000541953 TRMT112Q9UI30 125 aaKnown RBP20.28■□□□□ 0.84
CLSTN3-213ENST00000541953 CYP4F22Q6NT55 531 aa20.27■□□□□ 0.84
CLSTN3-213ENST00000541953 DPP8Q6V1X1 898 aaPredicted RBP20.27■□□□□ 0.84
CLSTN3-213ENST00000541953 USP50Q70EL3 339 aaPredicted RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms