RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TTLL7Q6ZT98 887 aa16.72■□□□□ 0.27
RTN3-210ENST00000540798 A0A087WZG4 1122 aa16.71■□□□□ 0.27
RTN3-210ENST00000540798 ATP5J2-PTCD1G3V325 749 aa16.71■□□□□ 0.27
RTN3-210ENST00000540798 PTCD1O75127 700 aaKnown RBP16.71■□□□□ 0.27
RTN3-210ENST00000540798 NUCB2P80303 420 aa16.71■□□□□ 0.27
RTN3-210ENST00000540798 KLHDC4Q8TBB5 520 aa16.71■□□□□ 0.27
RTN3-210ENST00000540798 A1BGP04217 495 aa16.71■□□□□ 0.27
RTN3-210ENST00000540798 PTMSP20962 102 aa16.71■□□□□ 0.27
RTN3-210ENST00000540798 FOXO4P98177 505 aa16.71■□□□□ 0.27
RTN3-210ENST00000540798 TLR7Q9NYK1 1049 aaKnown RBP16.71■□□□□ 0.27
RTN3-210ENST00000540798 VSIG10Q8N0Z9 540 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 KCNB2Q92953 911 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 TMX3Q96JJ7 454 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 ZMYND15Q9H091 742 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 BTG4Q9NY30 223 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 SIL1Q9H173 461 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 NRAPQ86VF7 1730 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 RUFY2Q8WXA3 655 aa16.7■□□□□ 0.26
RTN3-210ENST00000540798 CWC27Q6UX04 472 aaKnown RBP16.69■□□□□ 0.26
RTN3-210ENST00000540798 ZGPATQ8N5A5 531 aaKnown RBP16.69■□□□□ 0.26
RTN3-210ENST00000540798 CCDC8Q9H0W5 538 aaPredicted RBP16.69■□□□□ 0.26
RTN3-210ENST00000540798 TMOD3Q9NYL9 352 aa16.69■□□□□ 0.26
RTN3-210ENST00000540798 SNX14Q9Y5W7 946 aa16.69■□□□□ 0.26
RTN3-210ENST00000540798 LTBP4Q8N2S1 1624 aa16.69■□□□□ 0.26
RTN3-210ENST00000540798 CWC25Q9NXE8 425 aaPredicted RBP16.69■□□□□ 0.26
RTN3-210ENST00000540798 CCDC191Q8NCU4 936 aa16.68■□□□□ 0.26
RTN3-210ENST00000540798 JARID2Q92833 1246 aaPredicted RBP16.68■□□□□ 0.26
RTN3-210ENST00000540798 INTS4Q96HW7 963 aaKnown RBP16.68■□□□□ 0.26
RTN3-210ENST00000540798 DIAPH3Q9NSV4 1193 aa16.68■□□□□ 0.26
RTN3-210ENST00000540798 HIP1O00291 1037 aa16.68■□□□□ 0.26
RTN3-210ENST00000540798 PIGBQ92521 554 aa16.68■□□□□ 0.26
RTN3-210ENST00000540798 JCADQ9P266 1359 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 ANKRD36CQ5JPF3 1778 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 BCL9O00512 1426 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 TNNI3KQ59H18 835 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 TTC14Q96N46 770 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 FPGT-TNNI3KV9GXZ4 949 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 BAG4O95429 457 aaKnown RBP16.67■□□□□ 0.26
RTN3-210ENST00000540798 ISCA1Q9BUE6 129 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 TEX13AQ9BXU3 409 aaPredicted RBP16.67■□□□□ 0.26
RTN3-210ENST00000540798 RFX7Q2KHR2 1363 aa16.67■□□□□ 0.26
RTN3-210ENST00000540798 FSD2A1L4K1 749 aa16.66■□□□□ 0.26
RTN3-210ENST00000540798 ZDHHC9Q9Y397 364 aa16.66■□□□□ 0.26
RTN3-210ENST00000540798 ATP5JP18859 108 aa16.66■□□□□ 0.26
RTN3-210ENST00000540798 TFCP2Q12800 502 aa16.66■□□□□ 0.26
RTN3-210ENST00000540798 SKOR2Q2VWA4 1001 aaPredicted RBP16.66■□□□□ 0.26
RTN3-210ENST00000540798 ATG3Q9NT62 314 aa16.66■□□□□ 0.26
RTN3-210ENST00000540798 DBNLQ9UJU6 430 aaKnown RBP16.66■□□□□ 0.26
RTN3-210ENST00000540798 PKP1Q13835 747 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 LMBR1LQ6UX01 489 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 KIAA1211Q6ZU35 1233 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 ILDR1Q86SU0 546 aaPredicted RBP16.65■□□□□ 0.26
RTN3-210ENST00000540798 RASEFQ8IZ41 740 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 MED23Q9ULK4 1368 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 DOT1LQ8TEK3 1739 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 PTH1RQ03431 593 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 TRIM28Q13263 835 aaKnown RBP16.65■□□□□ 0.26
RTN3-210ENST00000540798 ASAP1Q9ULH1 1129 aa16.65■□□□□ 0.26
RTN3-210ENST00000540798 ATG9AQ7Z3C6 839 aa16.64■□□□□ 0.25
RTN3-210ENST00000540798 UPF3BQ9BZI7 483 aaKnown RBP16.64■□□□□ 0.25
RTN3-210ENST00000540798 CCDC171Q6TFL3 1326 aa16.64■□□□□ 0.25
RTN3-210ENST00000540798 GPR108Q9NPR9 543 aa16.64■□□□□ 0.25
RTN3-210ENST00000540798 PHLPP1O60346 1717 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 NECTIN1Q15223 517 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 ZBTB3Q9H5J0 574 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 CICQ96RK0 1608 aaPredicted RBP16.63■□□□□ 0.25
RTN3-210ENST00000540798 NMIQ13287 307 aaPredicted RBP16.63■□□□□ 0.25
RTN3-210ENST00000540798 TM6SF1Q9BZW5 370 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 BOLA2Q9H3K6 86 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 SPEF2Q9C093 1822 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 TCIRG1Q13488 830 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 MAP4K1Q92918 833 aa16.63■□□□□ 0.25
RTN3-210ENST00000540798 DNAJC10Q8IXB1 793 aa16.62■□□□□ 0.25
RTN3-210ENST00000540798 FAM227BQ96M60 508 aa16.62■□□□□ 0.25
RTN3-210ENST00000540798 CIAO1O76071 339 aa16.61■□□□□ 0.25
RTN3-210ENST00000540798 L1TD1Q5T7N2 865 aaKnown RBP16.61■□□□□ 0.25
RTN3-210ENST00000540798 RREB1Q92766 1687 aa16.61■□□□□ 0.25
RTN3-210ENST00000540798 ZNF609O15014 1411 aa16.61■□□□□ 0.25
RTN3-210ENST00000540798 A0A0D9SFI3 127 aa16.61■□□□□ 0.25
RTN3-210ENST00000540798 CERKQ8TCT0 537 aa16.61■□□□□ 0.25
RTN3-210ENST00000540798 PLA2G12BQ9BX93 195 aa16.61■□□□□ 0.25
RTN3-210ENST00000540798 NWD2Q9ULI1 1742 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 A0A0U1RQG5 324 aaPredicted RBP16.6■□□□□ 0.25
RTN3-210ENST00000540798 GOLGA6L22H0YM25 854 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 BRD1O95696 1058 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 HAUS7Q99871 368 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 ZSWIM6Q9HCJ5 1215 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 RPAP1Q9BWH6 1393 aaPredicted RBP16.6■□□□□ 0.25
RTN3-210ENST00000540798 NUP98P52948 1817 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 STARD3NLO95772 234 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 IL15P40933 162 aaPredicted RBP16.6■□□□□ 0.25
RTN3-210ENST00000540798 TICAM2Q86XR7 235 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 SLC4A9Q96Q91 983 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 DBNDD2Q9BQY9 259 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 FSD1Q9BTV5 496 aa16.6■□□□□ 0.25
RTN3-210ENST00000540798 MYH3P11055 1940 aa16.59■□□□□ 0.25
RTN3-210ENST00000540798 AK2P54819 239 aa16.59■□□□□ 0.25
RTN3-210ENST00000540798 ISY1Q9ULR0 285 aaKnown RBP16.59■□□□□ 0.25
RTN3-210ENST00000540798 RBM8AQ9Y5S9 174 aaKnown RBP16.59■□□□□ 0.25
RTN3-210ENST00000540798 PCCAP05165 728 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms