RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 MLLT1Q03111 559 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 FMR1Q06787 632 aaKnown RBP eCLIP15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 CST9Q5W186 159 aa15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 PAXIP1Q6ZW49 1069 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 USP50Q70EL3 339 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 MCM10Q7L590 875 aa15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 HOXA10P31260 410 aaPredicted RBP15.54■□□□□ 0.08
CLSTN3-209ENST00000539982 SCNN1DP51172 638 aa15.54■□□□□ 0.08
CLSTN3-209ENST00000539982 CNGB1Q14028 1251 aaPredicted RBP15.54■□□□□ 0.08
CLSTN3-209ENST00000539982 CYP4F22Q6NT55 531 aa15.54■□□□□ 0.08
CLSTN3-209ENST00000539982 LARGE2Q8N3Y3 721 aa15.54■□□□□ 0.08
CLSTN3-209ENST00000539982 ERVV-1B6SEH8 477 aa15.53■□□□□ 0.08
CLSTN3-209ENST00000539982 MAP2K2P36507 400 aa15.53■□□□□ 0.08
CLSTN3-209ENST00000539982 NUTM1Q86Y26 1132 aa15.53■□□□□ 0.08
CLSTN3-209ENST00000539982 CFAP53Q96M91 514 aa15.53■□□□□ 0.08
CLSTN3-209ENST00000539982 NUDCQ9Y266 331 aa15.53■□□□□ 0.08
CLSTN3-209ENST00000539982 TLL2Q9Y6L7 1015 aa15.53■□□□□ 0.08
CLSTN3-209ENST00000539982 COL4A5P29400 1685 aa15.52■□□□□ 0.08
CLSTN3-209ENST00000539982 HTATSF1O43719 755 aaKnown RBP15.52■□□□□ 0.08
CLSTN3-209ENST00000539982 GRM1Q13255 1194 aa15.52■□□□□ 0.08
CLSTN3-209ENST00000539982 TAF7Q15545 349 aaPredicted RBP15.52■□□□□ 0.08
CLSTN3-209ENST00000539982 RPGRQ92834 1020 aaKnown RBP15.52■□□□□ 0.08
CLSTN3-209ENST00000539982 LTBP1Q14766 1721 aa15.51■□□□□ 0.07
CLSTN3-209ENST00000539982 TRAF5O00463 557 aa15.51■□□□□ 0.07
CLSTN3-209ENST00000539982 DCTN1Q14203 1278 aa15.51■□□□□ 0.07
CLSTN3-209ENST00000539982 CRAMP1Q96RY5 1269 aa15.51■□□□□ 0.07
CLSTN3-209ENST00000539982 ABCC12Q96J65 1359 aa15.5■□□□□ 0.07
CLSTN3-209ENST00000539982 THSD7BQ9C0I4 1608 aa15.5■□□□□ 0.07
CLSTN3-209ENST00000539982 U2AF1L5P0DN76 240 aaPredicted RBP15.5■□□□□ 0.07
CLSTN3-209ENST00000539982 U2AF1Q01081 240 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLSTN3-209ENST00000539982 NIM1KQ8IY84 436 aa15.5■□□□□ 0.07
CLSTN3-209ENST00000539982 NGEFQ8N5V2 710 aa15.5■□□□□ 0.07
CLSTN3-209ENST00000539982 RBM17Q96I25 401 aaKnown RBP15.5■□□□□ 0.07
CLSTN3-209ENST00000539982 MAP3K15Q6ZN16 1313 aa15.49■□□□□ 0.07
CLSTN3-209ENST00000539982 CA12O43570 354 aa15.49■□□□□ 0.07
CLSTN3-209ENST00000539982 AOC2O75106 756 aa15.49■□□□□ 0.07
CLSTN3-209ENST00000539982 VPS33BQ9H267 617 aa15.49■□□□□ 0.07
CLSTN3-209ENST00000539982 ADARB2Q9NS39 739 aaKnown RBP15.49■□□□□ 0.07
CLSTN3-209ENST00000539982 MIS18AQ9NYP9 233 aa15.49■□□□□ 0.07
CLSTN3-209ENST00000539982 GPRC5DQ9NZD1 345 aa15.49■□□□□ 0.07
CLSTN3-209ENST00000539982 TRPM7Q96QT4 1865 aa15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 TCERG1O14776 1098 aaKnown RBP15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 PPEF1O14829 653 aaPredicted RBP15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 SUSD4Q5VX71 490 aa15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 KIF6Q6ZMV9 814 aa15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 SAPCD2Q86UD0 394 aa15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 TSKSQ9UJT2 592 aa15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 RIC1Q4ADV7 1423 aa15.48■□□□□ 0.07
CLSTN3-209ENST00000539982 PPIP5K2O43314 1243 aa15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 GPTP24298 496 aa15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 TTLL7Q6ZT98 887 aa15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 HHIPL1Q96JK4 782 aa15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 TMX4Q9H1E5 349 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 PGAP2Q9UHJ9 254 aa15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 RRP7AQ9Y3A4 280 aaKnown RBP15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 IBTKQ9P2D0 1353 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-209ENST00000539982 UBN2Q6ZU65 1347 aa15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 NUP98P52948 1817 aa15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 CELF2O95319 508 aaKnown RBP15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 CXCL9Q07325 125 aa15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 ZNF34Q8IZ26 560 aa15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 CCER1Q8TC90 406 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 PNISRQ8TF01 805 aaKnown RBP15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 PCDH10Q9P2E7 1040 aa15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 ZNRF3Q9ULT6 936 aa15.46■□□□□ 0.07
CLSTN3-209ENST00000539982 BRPF1P55201 1214 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 AOC3Q16853 763 aa15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 SLC51AQ86UW1 340 aa15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 SUPT20HQ8NEM7 779 aa15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 NLRP3Q96P20 1036 aa15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 MCOLN1Q9GZU1 580 aa15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 ZBTB3Q9H5J0 574 aa15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 ATP6V0A2Q9Y487 856 aa15.45■□□□□ 0.06
CLSTN3-209ENST00000539982 NTSR2O95665 410 aa15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 MYL6BP14649 208 aa15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 GIGYF2Q6Y7W6 1299 aaKnown RBP15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 C3orf67Q6ZVT6 689 aa15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 PPP1R42Q7Z4L9 355 aa15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 ZC3H15Q8WU90 426 aaKnown RBP15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 RTFDC1Q9BY42 306 aaPredicted RBP15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 GLIS2Q9BZE0 524 aaPredicted RBP15.44■□□□□ 0.06
CLSTN3-209ENST00000539982 GMPSP49915 693 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-209ENST00000539982 EIF4A1P60842 406 aaKnown RBP15.43■□□□□ 0.06
CLSTN3-209ENST00000539982 SLC10A5Q5PT55 438 aa15.43■□□□□ 0.06
CLSTN3-209ENST00000539982 CDC37L1Q7L3B6 337 aa15.43■□□□□ 0.06
CLSTN3-209ENST00000539982 CFAP44Q96MT7 982 aa15.43■□□□□ 0.06
CLSTN3-209ENST00000539982 LAMB4A4D0S4 1761 aa15.43■□□□□ 0.06
CLSTN3-209ENST00000539982 PPP2R1AP30153 589 aa15.42■□□□□ 0.06
CLSTN3-209ENST00000539982 PARP10Q53GL7 1025 aa15.42■□□□□ 0.06
CLSTN3-209ENST00000539982 CDHR2Q9BYE9 1310 aa15.42■□□□□ 0.06
CLSTN3-209ENST00000539982 BBOX1O75936 387 aa15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 HIRAP54198 1017 aaPredicted RBP15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 DGKZQ13574 1117 aa15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 TNIP1Q15025 636 aa15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 CIAPIN1Q6FI81 312 aa15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 DPP8Q6V1X1 898 aaPredicted RBP15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 SP8Q8IXZ3 490 aa15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 BCL2L13Q9BXK5 485 aa15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 ZNF408Q9H9D4 720 aa15.41■□□□□ 0.06
CLSTN3-209ENST00000539982 CASP8AP2Q9UKL3 1982 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms