RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ABTB2Q8N961 1025 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 CCDC112Q8NEF3 446 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 UTP14CQ5TAP6 766 aaKnown RBP13.32□□□□□ -0.28
SYNE1-237ENST00000539504 DDX19AQ9NUU7 478 aaKnown RBP13.32□□□□□ -0.28
SYNE1-237ENST00000539504 RIMBP3CA6NJZ7 1639 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 RIMBP3BA6NNM3 1639 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 RIMBP3Q9UFD9 1639 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 SLC27A2O14975 620 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 NECTIN1Q15223 517 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 ERC1Q8IUD2 1116 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 LGR6Q9HBX8 967 aa13.32□□□□□ -0.28
SYNE1-237ENST00000539504 CEP170BQ9Y4F5 1589 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-237ENST00000539504 DDX11Q96FC9 970 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 GTPBP4Q9BZE4 634 aaKnown RBP13.31□□□□□ -0.28
SYNE1-237ENST00000539504 NRKQ7Z2Y5 1582 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 ZNF75DP51815 510 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 ANKRD1Q15327 319 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 MAP3K2Q9Y2U5 619 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 C3P01024 1663 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 AIMP1Q12904 312 aaKnown RBP13.31□□□□□ -0.28
SYNE1-237ENST00000539504 COL9A3Q14050 684 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-237ENST00000539504 CWF19L2Q2TBE0 894 aaKnown RBP13.31□□□□□ -0.28
SYNE1-237ENST00000539504 ZNF771Q7L3S4 317 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-237ENST00000539504 LEO1Q8WVC0 666 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-237ENST00000539504 FBXW7Q969H0 707 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 NAP1L2Q9ULW6 460 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-237ENST00000539504 RICTORQ6R327 1708 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 NPHP3Q7Z494 1330 aa13.31□□□□□ -0.28
SYNE1-237ENST00000539504 AMOTL2Q9Y2J4 779 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 MON2Q7Z3U7 1717 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 RIMS1Q86UR5 1692 aaKnown RBP13.3□□□□□ -0.28
SYNE1-237ENST00000539504 BTBD11A6QL63 1104 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 HIP1O00291 1037 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 NR1I2O75469 434 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 EIF4A1P60842 406 aaKnown RBP13.3□□□□□ -0.28
SYNE1-237ENST00000539504 ZSCAN25Q6NSZ9 544 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 CHMP4AQ9BY43 222 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 BECN2A8MW95 431 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 ITSN1Q15811 1721 aa13.3□□□□□ -0.28
SYNE1-237ENST00000539504 NAA30Q147X3 362 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-237ENST00000539504 CLSTN2Q9H4D0 955 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 MPRIPQ6WCQ1 1025 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 FILIP1Q7Z7B0 1213 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 MAP4K1Q92918 833 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 BABAM1Q9NWV8 329 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 A0A0D9SFI3 127 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 SMTNL1A8MU46 457 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 HDAC5Q9UQL6 1122 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 PEAK1Q9H792 1746 aa13.29□□□□□ -0.28
SYNE1-237ENST00000539504 JAK2O60674 1132 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 LTKP29376 864 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 NCBP1Q09161 790 aaKnown RBP13.28□□□□□ -0.28
SYNE1-237ENST00000539504 ANKRD7Q92527 254 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 ELP1O95163 1332 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 TECPR2O15040 1411 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 PDIA4P13667 645 aaKnown RBP13.28□□□□□ -0.28
SYNE1-237ENST00000539504 RPS6KB1P23443 525 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 EAF2Q96CJ1 260 aaPredicted RBP13.28□□□□□ -0.28
SYNE1-237ENST00000539504 CCDC9Q9Y3X0 531 aaKnown RBP13.28□□□□□ -0.28
SYNE1-237ENST00000539504 EID1Q9Y6B2 187 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 TAF6LQ9Y6J9 622 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 ZNF530Q6P9A1 599 aaPredicted RBP13.28□□□□□ -0.28
SYNE1-237ENST00000539504 CACTINQ8WUQ7 758 aaKnown RBP13.28□□□□□ -0.28
SYNE1-237ENST00000539504 BRF1Q92994 677 aa13.28□□□□□ -0.28
SYNE1-237ENST00000539504 DBF4Q9UBU7 674 aaPredicted RBP13.27□□□□□ -0.28
SYNE1-237ENST00000539504 CTIFO43310 598 aaKnown RBP13.27□□□□□ -0.29
SYNE1-237ENST00000539504 LRRC2Q9BYS8 371 aa13.27□□□□□ -0.29
SYNE1-237ENST00000539504 TRMT1Q9NXH9 659 aaKnown RBP13.27□□□□□ -0.29
SYNE1-237ENST00000539504 TLR7Q9NYK1 1049 aaKnown RBP13.27□□□□□ -0.29
SYNE1-237ENST00000539504 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.27□□□□□ -0.29
SYNE1-237ENST00000539504 V9GYY5 206 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-237ENST00000539504 USP42Q9H9J4 1324 aaKnown RBP13.27□□□□□ -0.29
SYNE1-237ENST00000539504 TNRQ92752 1358 aa13.27□□□□□ -0.29
SYNE1-237ENST00000539504 TMEM2Q9UHN6 1383 aa13.27□□□□□ -0.29
SYNE1-237ENST00000539504 CEP135Q66GS9 1140 aa13.27□□□□□ -0.29
SYNE1-237ENST00000539504 KLHDC4Q8TBB5 520 aa13.27□□□□□ -0.29
SYNE1-237ENST00000539504 EDC3Q96F86 508 aaKnown RBP13.27□□□□□ -0.29
SYNE1-237ENST00000539504 PPFIA3O75145 1194 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 PXDNLA1KZ92 1463 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 NPHP1O15259 732 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 KLHL34Q8N239 644 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 TDRD7Q8NHU6 1098 aaKnown RBP13.26□□□□□ -0.29
SYNE1-237ENST00000539504 PGBD1Q96JS3 809 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 FEZ1Q99689 392 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 PAXBP1Q9Y5B6 917 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 A0A0U1RQG5 324 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-237ENST00000539504 CCDC144BQ3MJ40 725 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 CCDC144CPQ8IYA2 1237 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 OGFRQ9NZT2 677 aa13.26□□□□□ -0.29
SYNE1-237ENST00000539504 PROSER3Q2NL68 480 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 PLA2G4DQ86XP0 818 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 A0A087WWV3 80 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 KIF20AO95235 890 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 TOB2Q14106 344 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-237ENST00000539504 ARID5BQ14865 1188 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 CCDC73Q6ZRK6 1079 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-237ENST00000539504 ZNF589Q86UQ0 364 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-237ENST00000539504 KCNB2Q92953 911 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 SUCLG2Q96I99 432 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms