RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 ANKRD13DQ6ZTN6 518 aa24.57■■□□□ 1.52
CLIP1-211ENST00000539080 C8orf58Q8NAV2 365 aa24.57■■□□□ 1.52
CLIP1-211ENST00000539080 C7orf43Q8WVR3 580 aa24.56■■□□□ 1.52
CLIP1-211ENST00000539080 ZNF219Q9P2Y4 722 aaPredicted RBP24.56■■□□□ 1.52
CLIP1-211ENST00000539080 CCDC88AQ3V6T2 1871 aa24.55■■□□□ 1.52
CLIP1-211ENST00000539080 ELL2O00472 640 aaPredicted RBP24.55■■□□□ 1.52
CLIP1-211ENST00000539080 SLC10A5Q5PT55 438 aa24.55■■□□□ 1.52
CLIP1-211ENST00000539080 NLRP10Q86W26 655 aa24.55■■□□□ 1.52
CLIP1-211ENST00000539080 TIAM2Q8IVF5 1701 aa24.55■■□□□ 1.52
CLIP1-211ENST00000539080 HOXA10P31260 410 aaPredicted RBP24.54■■□□□ 1.52
CLIP1-211ENST00000539080 PRELPP51888 382 aa24.54■■□□□ 1.52
CLIP1-211ENST00000539080 CCDC30Q5VVM6 783 aa24.54■■□□□ 1.52
CLIP1-211ENST00000539080 WDR63Q8IWG1 891 aa24.54■■□□□ 1.52
CLIP1-211ENST00000539080 TAOK3Q9H2K8 898 aa24.54■■□□□ 1.52
CLIP1-211ENST00000539080 KDM2BQ8NHM5 1336 aa24.54■■□□□ 1.52
CLIP1-211ENST00000539080 DICER1Q9UPY3 1922 aaKnown RBP24.53■■□□□ 1.52
CLIP1-211ENST00000539080 CCDC93Q567U6 631 aa24.53■■□□□ 1.52
CLIP1-211ENST00000539080 RPGRQ92834 1020 aaKnown RBP24.53■■□□□ 1.52
CLIP1-211ENST00000539080 TSR2Q969E8 191 aaKnown RBP24.53■■□□□ 1.52
CLIP1-211ENST00000539080 NLRP3Q96P20 1036 aa24.53■■□□□ 1.52
CLIP1-211ENST00000539080 KIF3CO14782 793 aa24.52■■□□□ 1.52
CLIP1-211ENST00000539080 FAM9BQ8IZU0 186 aa24.52■■□□□ 1.52
CLIP1-211ENST00000539080 SENP3-EIF4A1A0A087X0R7 540 aa24.51■■□□□ 1.51
CLIP1-211ENST00000539080 GOLGA2Q08379 1002 aa24.51■■□□□ 1.51
CLIP1-211ENST00000539080 RBM17Q96I25 401 aaKnown RBP24.51■■□□□ 1.51
CLIP1-211ENST00000539080 CRAMP1Q96RY5 1269 aa24.51■■□□□ 1.51
CLIP1-211ENST00000539080 RTKN2Q8IZC4 609 aa24.5■■□□□ 1.51
CLIP1-211ENST00000539080 TSPYL6Q8N831 410 aa24.5■■□□□ 1.51
CLIP1-211ENST00000539080 ISCA1Q9BUE6 129 aa24.5■■□□□ 1.51
CLIP1-211ENST00000539080 TRMT112Q9UI30 125 aaKnown RBP24.5■■□□□ 1.51
CLIP1-211ENST00000539080 SH3TC1Q8TE82 1336 aa24.5■■□□□ 1.51
CLIP1-211ENST00000539080 TRIM28Q13263 835 aaKnown RBP24.49■■□□□ 1.51
CLIP1-211ENST00000539080 CC2D2BQ6DHV5 1058 aa24.49■■□□□ 1.51
CLIP1-211ENST00000539080 PHAXQ9H814 394 aaKnown RBP24.49■■□□□ 1.51
CLIP1-211ENST00000539080 TWISTNBQ3B726 338 aaPredicted RBP24.48■■□□□ 1.51
CLIP1-211ENST00000539080 GRIPAP1Q4V328 841 aa24.48■■□□□ 1.51
CLIP1-211ENST00000539080 RIC3Q7Z5B4 369 aa24.48■■□□□ 1.51
CLIP1-211ENST00000539080 LAMB2P55268 1798 aa24.47■■□□□ 1.51
CLIP1-211ENST00000539080 GLTPD2A6NH11 291 aa24.47■■□□□ 1.51
CLIP1-211ENST00000539080 FKBP4Q02790 459 aaKnown RBP eCLIP24.47■■□□□ 1.51
CLIP1-211ENST00000539080 NMRK2Q9NPI5 230 aa24.47■■□□□ 1.51
CLIP1-211ENST00000539080 FANCIQ9NVI1 1328 aa24.46■■□□□ 1.51
CLIP1-211ENST00000539080 DDX58O95786 925 aaKnown RBP24.46■■□□□ 1.51
CLIP1-211ENST00000539080 C3orf67Q6ZVT6 689 aa24.46■■□□□ 1.51
CLIP1-211ENST00000539080 STK31Q9BXU1 1019 aa24.46■■□□□ 1.51
CLIP1-211ENST00000539080 SALL2Q9Y467 1007 aaPredicted RBP24.46■■□□□ 1.51
CLIP1-211ENST00000539080 SNED1Q8TER0 1413 aa24.44■■□□□ 1.5
CLIP1-211ENST00000539080 ATP5J2-PTCD1G3V325 749 aa24.44■■□□□ 1.5
CLIP1-211ENST00000539080 TOMM70O94826 608 aa24.44■■□□□ 1.5
CLIP1-211ENST00000539080 DPY19L2Q6NUT2 758 aa24.44■■□□□ 1.5
CLIP1-211ENST00000539080 DDX60Q8IY21 1712 aaKnown RBP24.44■■□□□ 1.5
CLIP1-211ENST00000539080 HCLS1P14317 486 aaPredicted RBP24.43■■□□□ 1.5
CLIP1-211ENST00000539080 PSMD1Q99460 953 aa24.43■■□□□ 1.5
CLIP1-211ENST00000539080 PPEF1O14829 653 aaPredicted RBP24.42■■□□□ 1.5
CLIP1-211ENST00000539080 OLFM4Q6UX06 510 aa24.42■■□□□ 1.5
CLIP1-211ENST00000539080 SYNE4Q8N205 404 aa24.42■■□□□ 1.5
CLIP1-211ENST00000539080 MYH16Q9H6N6 1097 aa24.42■■□□□ 1.5
CLIP1-211ENST00000539080 METTL22Q9BUU2 404 aaPredicted RBP24.41■■□□□ 1.5
CLIP1-211ENST00000539080 RRAGCQ9HB90 399 aa24.41■■□□□ 1.5
CLIP1-211ENST00000539080 CACNA1FO60840 1977 aa24.41■■□□□ 1.5
CLIP1-211ENST00000539080 WDR90Q96KV7 1748 aa24.41■■□□□ 1.5
CLIP1-211ENST00000539080 ABCC4O15439 1325 aa24.4■■□□□ 1.5
CLIP1-211ENST00000539080 BBOX1O75936 387 aa24.4■■□□□ 1.5
CLIP1-211ENST00000539080 HSP90B1P14625 803 aaKnown RBP24.4■■□□□ 1.5
CLIP1-211ENST00000539080 DDX46Q7L014 1031 aaKnown RBP24.4■■□□□ 1.5
CLIP1-211ENST00000539080 C16orf71Q8IYS4 520 aaPredicted RBP24.4■■□□□ 1.5
CLIP1-211ENST00000539080 CCDC191Q8NCU4 936 aa24.4■■□□□ 1.5
CLIP1-211ENST00000539080 FAM89AQ96GI7 184 aa24.4■■□□□ 1.5
CLIP1-211ENST00000539080 TMX4Q9H1E5 349 aaPredicted RBP24.4■■□□□ 1.5
CLIP1-211ENST00000539080 KSR2Q6VAB6 950 aa24.39■■□□□ 1.49
CLIP1-211ENST00000539080 ZBTB38Q8NAP3 1195 aaPredicted RBP24.39■■□□□ 1.49
CLIP1-211ENST00000539080 MYD88Q99836 296 aa24.39■■□□□ 1.49
CLIP1-211ENST00000539080 ZNF277Q9NRM2 450 aaPredicted RBP24.39■■□□□ 1.49
CLIP1-211ENST00000539080 ATP6V0A2Q9Y487 856 aa24.39■■□□□ 1.49
CLIP1-211ENST00000539080 SLC4A2P04920 1241 aa24.38■■□□□ 1.49
CLIP1-211ENST00000539080 VEGFAP15692 232 aaPredicted RBP24.38■■□□□ 1.49
CLIP1-211ENST00000539080 IARSP41252 1262 aaKnown RBP24.38■■□□□ 1.49
CLIP1-211ENST00000539080 RBM46Q8TBY0 533 aaKnown RBP24.38■■□□□ 1.49
CLIP1-211ENST00000539080 ZNF521Q96K83 1311 aa24.37■■□□□ 1.49
CLIP1-211ENST00000539080 VAMP4O75379 141 aa24.37■■□□□ 1.49
CLIP1-211ENST00000539080 EXOSC9Q06265 439 aaKnown RBP24.37■■□□□ 1.49
CLIP1-211ENST00000539080 GRAPQ13588 217 aa24.37■■□□□ 1.49
CLIP1-211ENST00000539080 SF3B3Q15393 1217 aaKnown RBP24.37■■□□□ 1.49
CLIP1-211ENST00000539080 TMC4Q7Z404 712 aa24.37■■□□□ 1.49
CLIP1-211ENST00000539080 GRAPLQ8TC17 118 aaPredicted RBP24.37■■□□□ 1.49
CLIP1-211ENST00000539080 MAP3K2Q9Y2U5 619 aa24.37■■□□□ 1.49
CLIP1-211ENST00000539080 PI4KAP2A4QPH2 592 aa24.36■■□□□ 1.49
CLIP1-211ENST00000539080 CCER2I3L3R5 266 aa24.36■■□□□ 1.49
CLIP1-211ENST00000539080 IRS4O14654 1257 aaPredicted RBP24.36■■□□□ 1.49
CLIP1-211ENST00000539080 PI4KAP1Q8N8J0 262 aa24.36■■□□□ 1.49
CLIP1-211ENST00000539080 SPINK5Q9NQ38 1064 aaPredicted RBP24.36■■□□□ 1.49
CLIP1-211ENST00000539080 CWC25Q9NXE8 425 aaPredicted RBP24.36■■□□□ 1.49
CLIP1-211ENST00000539080 TCERG1O14776 1098 aaKnown RBP24.35■■□□□ 1.49
CLIP1-211ENST00000539080 PCCAP05165 728 aaPredicted RBP24.35■■□□□ 1.49
CLIP1-211ENST00000539080 NEXNQ0ZGT2 675 aa24.35■■□□□ 1.49
CLIP1-211ENST00000539080 SP8Q8IXZ3 490 aa24.35■■□□□ 1.49
CLIP1-211ENST00000539080 HSPA6P17066 643 aa24.34■■□□□ 1.49
CLIP1-211ENST00000539080 ZNF428Q96B54 188 aa24.34■■□□□ 1.49
CLIP1-211ENST00000539080 VPS33BQ9H267 617 aa24.34■■□□□ 1.49
CLIP1-211ENST00000539080 FSTL1Q12841 308 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms