RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	LUZP1	Q86V48	1076 aa		10.65	□□□□□ -0.7
SNHG1-209	ENST00000538654	CBX8	Q9HC52	389 aa		10.65	□□□□□ -0.7
SNHG1-209	ENST00000538654	PREX1	Q8TCU6	1659 aa		10.65	□□□□□ -0.7
SNHG1-209	ENST00000538654	POGZ	Q7Z3K3	1410 aa		10.65	□□□□□ -0.7
SNHG1-209	ENST00000538654	GOLGA6L4	A6NEF3	574 aa		10.65	□□□□□ -0.71
SNHG1-209	ENST00000538654	SOX12	O15370	315 aa		10.65	□□□□□ -0.71
SNHG1-209	ENST00000538654	PDC	P20941	246 aa		10.65	□□□□□ -0.71
SNHG1-209	ENST00000538654	IRX5	P78411	483 aa	Predicted RBP	10.65	□□□□□ -0.71
SNHG1-209	ENST00000538654	VPS53	Q5VIR6	699 aa		10.65	□□□□□ -0.71
SNHG1-209	ENST00000538654	SCAND2P	Q9GZW5	306 aa	Predicted RBP	10.65	□□□□□ -0.71
SNHG1-209	ENST00000538654	CLIP2	Q9UDT6	1046 aa		10.65	□□□□□ -0.71
SNHG1-209	ENST00000538654	MLH3	Q9UHC1	1453 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	NRK	Q7Z2Y5	1582 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	LRMP	Q12912	555 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	PTPN14	Q15678	1187 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	ANO6	Q4KMQ2	910 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	ITSN1	Q15811	1721 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	DLC1	Q96QB1	1528 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	HTATSF1	O43719	755 aa	Known RBP	10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	RBM6	P78332	1123 aa	Known RBP	10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	RBM43	Q6ZSC3	357 aa	Known RBP	10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	HYPK	Q9NX55	129 aa		10.64	□□□□□ -0.71
SNHG1-209	ENST00000538654	NPHP3	Q7Z494	1330 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	PDE6B	P35913	854 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	KMT5B	Q4FZB7	885 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	PROSER2	Q86WR7	435 aa	Predicted RBP	10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	CNTROB	Q8N137	903 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	TM6SF1	Q9BZW5	370 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	LSG1	Q9H089	658 aa	Known RBP	10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	CHD2	O14647	1828 aa	Known RBP	10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	VPS37C	A5D8V6	355 aa	Predicted RBP	10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	FBLN1	P23142	703 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	BMS1	Q14692	1282 aa	Known RBP	10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	UNC5CL	Q8IV45	518 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	RUFY2	Q8WXA3	655 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	COG3	Q96JB2	828 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	N4BP2	Q86UW6	1770 aa	Predicted RBP	10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654	ADGRL3	Q9HAR2	1447 aa		10.63	□□□□□ -0.71
SNHG1-209	ENST00000538654		A6NJR5	290 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	CAST	P20810	708 aa	Known RBP	10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	FLII	Q13045	1269 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	GORAB	Q5T7V8	394 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	SARM1	Q6SZW1	724 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	CCDC83	Q8IWF9	413 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	CACTIN	Q8WUQ7	758 aa	Known RBP	10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	STK31	Q9BXU1	1019 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	CLSTN2	Q9H4D0	955 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	KCND1	Q9NSA2	647 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	PDRG1	Q9NUG6	133 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	CACNA1F	O60840	1977 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	SLU7	O95391	586 aa	Known RBP	10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	ZNF165	P49910	485 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	MCM6	Q14566	821 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	NYAP1	Q6ZVC0	841 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	LRRC8A	Q8IWT6	810 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	NRBP1	Q9UHY1	535 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	CYP46A1	Q9Y6A2	500 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	TTC21A	Q8NDW8	1320 aa		10.62	□□□□□ -0.71
SNHG1-209	ENST00000538654	TULP2	O00295	520 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	TTC6	Q86TZ1	520 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	KRI1	Q8N9T8	703 aa	Known RBP	10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	KIF1BP	Q96EK5	621 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	MRFAP1L1	Q96HT8	127 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	PNMA2	Q9UL42	364 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	ZNF215	Q9UL58	517 aa	Predicted RBP	10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	MYO5B	Q9ULV0	1848 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	SOS1	Q07889	1333 aa	Predicted RBP	10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	GOLGA6L19	H0YKK7	550 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	NAA30	Q147X3	362 aa	Predicted RBP	10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	CAMK4	Q16566	473 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	LARP1B	Q659C4	914 aa	Known RBP	10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	NOL10	Q9BSC4	688 aa	Known RBP	10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	DACT1	Q9NYF0	836 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	TMEM131L	A2VDJ0	1609 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	ALK	Q9UM73	1620 aa		10.61	□□□□□ -0.71
SNHG1-209	ENST00000538654	PNMA6E	A0A0J9YXQ4	647 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654		F6X3S4	739 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	STK25	O00506	426 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	TUBB4A	P04350	444 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	LIG1	P18858	919 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	PAX3	P23760	479 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	IDI1	Q13907	227 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	FBXO38	Q6PIJ6	1188 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	RASEF	Q8IZ41	740 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	ZSWIM6	Q9HCJ5	1215 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	CRB1	P82279	1406 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	PXDNL	A1KZ92	1463 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	IL25	Q9H293	177 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	GABBR1	Q9UBS5	961 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	XRN1	Q8IZH2	1706 aa	Known RBP	10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	TESPA1	A2RU30	521 aa	Predicted RBP	10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	DHX8	Q14562	1220 aa	Known RBP	10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	MCM10	Q7L590	875 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	CKAP2L	Q8IYA6	745 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	AMOTL2	Q9Y2J4	779 aa		10.6	□□□□□ -0.71
SNHG1-209	ENST00000538654	TTC21B	Q7Z4L5	1316 aa		10.59	□□□□□ -0.71
SNHG1-209	ENST00000538654	MON2	Q7Z3U7	1717 aa		10.59	□□□□□ -0.71
SNHG1-209	ENST00000538654	CRYBG1	Q9Y4K1	1723 aa		10.59	□□□□□ -0.71
SNHG1-209	ENST00000538654	SKIL	P12757	684 aa		10.59	□□□□□ -0.71
SNHG1-209	ENST00000538654	CYP2C19	P33261	490 aa		10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms