RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-209ENST00000538439 BEGAINQ9BUH8 593 aa12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 TMOD3Q9NYL9 352 aa12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 MRC1P22897 1456 aa12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 SHANK3Q9BYB0 1731 aa12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 RARSP54136 660 aaKnown RBP12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 EIF4A1P60842 406 aaKnown RBP12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 SKIV2LQ15477 1246 aaKnown RBP12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 ALDH1L2Q3SY69 923 aa12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 ZNF790Q6PG37 636 aa12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 ZNF710Q8N1W2 664 aa12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 TSPYL6Q8N831 410 aa12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 RBM46Q8TBY0 533 aaKnown RBP12.91□□□□□ -0.34
NPIPB3-209ENST00000538439 GPR153Q6NV75 609 aa12.9□□□□□ -0.34
NPIPB3-209ENST00000538439 SCUBE2Q9NQ36 999 aa12.9□□□□□ -0.34
NPIPB3-209ENST00000538439 KCNQ3O43525 872 aa12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 HOXB7P09629 217 aa12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 RRP1P56182 461 aaKnown RBP12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 SLC39A6Q13433 755 aa12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 KRT24Q2M2I5 525 aa12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 KRT27Q7Z3Y8 459 aa12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 SYTL4Q96C24 671 aaPredicted RBP12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 SMC4Q9NTJ3 1288 aa12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 VIRMAQ69YN4 1812 aaKnown RBP12.89□□□□□ -0.35
NPIPB3-209ENST00000538439 RNF123Q5XPI4 1314 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 BCAR3O75815 825 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 CANXP27824 592 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 PPP4R3BQ5MIZ7 849 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 CCDC30Q5VVM6 783 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 MAMSTRQ6ZN01 415 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 FMNL2Q96PY5 1086 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 THSD7AQ9UPZ6 1657 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 UTRNP46939 3433 aa12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 TNS1Q9HBL0 1735 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-209ENST00000538439 SIPA1L3O60292 1781 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 POTEJP0CG39 1038 aa12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 R3HDM1Q15032 1099 aaKnown RBP12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 NLRP7Q8WX94 980 aa12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 SSH1Q8WYL5 1049 aa12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 PIGBQ92521 554 aa12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 ACSBG1Q96GR2 724 aa12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 BCL2L13Q9BXK5 485 aa12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 STK31Q9BXU1 1019 aa12.87□□□□□ -0.35
NPIPB3-209ENST00000538439 KDM3BQ7LBC6 1761 aa12.86□□□□□ -0.35
NPIPB3-209ENST00000538439 IPO8O15397 1037 aaKnown RBP12.86□□□□□ -0.35
NPIPB3-209ENST00000538439 GIGYF1O75420 1035 aaPredicted RBP12.86□□□□□ -0.35
NPIPB3-209ENST00000538439 SNRPA1P09661 255 aaKnown RBP12.86□□□□□ -0.35
NPIPB3-209ENST00000538439 FRAT1Q92837 279 aaPredicted RBP12.86□□□□□ -0.35
NPIPB3-209ENST00000538439 BCL9O00512 1426 aa12.86□□□□□ -0.35
NPIPB3-209ENST00000538439 KIF16BQ96L93 1317 aa12.86□□□□□ -0.35
NPIPB3-209ENST00000538439 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-209ENST00000538439 BAG6P46379 1132 aa12.85□□□□□ -0.35
NPIPB3-209ENST00000538439 HDGFL1Q5TGJ6 251 aa12.85□□□□□ -0.35
NPIPB3-209ENST00000538439 ZNF496Q96IT1 587 aaPredicted RBP12.85□□□□□ -0.35
NPIPB3-209ENST00000538439 CAMKK2Q96RR4 588 aa12.85□□□□□ -0.35
NPIPB3-209ENST00000538439 LHX6Q9UPM6 363 aa12.85□□□□□ -0.35
NPIPB3-209ENST00000538439 HEG1Q9ULI3 1381 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 TCERG1O14776 1098 aaKnown RBP12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 PLIN1O60240 522 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 EIF2S2P20042 333 aaKnown RBP12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 SF3B2Q13435 895 aaKnown RBP12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 DIXDC1Q155Q3 683 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 FAM182BQ5T319 152 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 ZKSCAN2Q63HK3 967 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 MRPL50Q8N5N7 158 aaKnown RBP12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 SMARCC1Q92922 1105 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 BCL2L12Q9HB09 334 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 ATG3Q9NT62 314 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 ASAP1Q9ULH1 1129 aa12.84□□□□□ -0.35
NPIPB3-209ENST00000538439 TOGARAM1Q9Y4F4 1720 aa12.83□□□□□ -0.36
NPIPB3-209ENST00000538439 PTCD1O75127 700 aaKnown RBP12.83□□□□□ -0.36
NPIPB3-209ENST00000538439 YY1P25490 414 aa12.83□□□□□ -0.36
NPIPB3-209ENST00000538439 TEX13AQ9BXU3 409 aaPredicted RBP12.83□□□□□ -0.36
NPIPB3-209ENST00000538439 NOB1Q9ULX3 412 aaKnown RBP12.83□□□□□ -0.36
NPIPB3-209ENST00000538439 PPP1R3GB7ZBB8 358 aa12.82□□□□□ -0.36
NPIPB3-209ENST00000538439 EZH2Q15910 746 aaKnown RBP12.82□□□□□ -0.36
NPIPB3-209ENST00000538439 FAM196AQ6ZSG2 479 aa12.82□□□□□ -0.36
NPIPB3-209ENST00000538439 NECTIN2Q92692 538 aa12.82□□□□□ -0.36
NPIPB3-209ENST00000538439 DOT1LQ8TEK3 1739 aa12.82□□□□□ -0.36
NPIPB3-209ENST00000538439 CEP350Q5VT06 3117 aa12.82□□□□□ -0.36
NPIPB3-209ENST00000538439 ITGB4P16144 1822 aa12.81□□□□□ -0.36
NPIPB3-209ENST00000538439 KAT6BQ8WYB5 2073 aa12.81□□□□□ -0.36
NPIPB3-209ENST00000538439 KCNQ2O43526 872 aa12.81□□□□□ -0.36
NPIPB3-209ENST00000538439 IRX6P78412 446 aaPredicted RBP12.81□□□□□ -0.36
NPIPB3-209ENST00000538439 PDE3AQ14432 1141 aa12.81□□□□□ -0.36
NPIPB3-209ENST00000538439 ARHGAP45Q92619 1136 aa12.81□□□□□ -0.36
NPIPB3-209ENST00000538439 DBF4Q9UBU7 674 aaPredicted RBP12.81□□□□□ -0.36
NPIPB3-209ENST00000538439 POTEB2H3BUK9 544 aa12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 PTPREP23469 700 aa12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 MYSM1Q5VVJ2 828 aa12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 ERICH6BQ5W0A0 696 aa12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 ATF7IPQ6VMQ6 1270 aa12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 API5Q9BZZ5 524 aaKnown RBP12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 USP16Q9Y5T5 823 aa12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 PTPRCP08575 1304 aa12.8□□□□□ -0.36
NPIPB3-209ENST00000538439 PRAMEF22A3QJZ6 481 aa12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 CLK2P49760 499 aaKnown RBP12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 FTSJ3Q8IY81 847 aaKnown RBP12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 DZIP1LQ8IYY4 767 aaKnown RBP12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 DDX21Q9NR30 783 aaKnown RBP eCLIP12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 POLR3EQ9NVU0 708 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms