RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 TNRC6CQ9HCJ0 1690 aaKnown RBP16.99■□□□□ 0.31
PRKDC-206ENST00000536429 NFKBIEO00221 500 aa16.98■□□□□ 0.31
PRKDC-206ENST00000536429 NPR1P16066 1061 aa16.98■□□□□ 0.31
PRKDC-206ENST00000536429 C9orf131Q5VYM1 1079 aa16.98■□□□□ 0.31
PRKDC-206ENST00000536429 PPP1R42Q7Z4L9 355 aa16.98■□□□□ 0.31
PRKDC-206ENST00000536429 MIER1Q8N108 512 aa16.98■□□□□ 0.31
PRKDC-206ENST00000536429 ISCA1Q9BUE6 129 aa16.98■□□□□ 0.31
PRKDC-206ENST00000536429 ARFGEF1Q9Y6D6 1849 aa16.98■□□□□ 0.31
PRKDC-206ENST00000536429 CRY2Q49AN0 593 aa16.97■□□□□ 0.31
PRKDC-206ENST00000536429 OLFM4Q6UX06 510 aa16.97■□□□□ 0.31
PRKDC-206ENST00000536429 G2E3Q7L622 706 aa16.97■□□□□ 0.31
PRKDC-206ENST00000536429 SLC51AQ86UW1 340 aa16.97■□□□□ 0.31
PRKDC-206ENST00000536429 CNKSR1Q969H4 720 aa16.97■□□□□ 0.31
PRKDC-206ENST00000536429 VAMP4O75379 141 aa16.96■□□□□ 0.31
PRKDC-206ENST00000536429 GOLGA2Q08379 1002 aa16.96■□□□□ 0.31
PRKDC-206ENST00000536429 RIC3Q7Z5B4 369 aa16.96■□□□□ 0.31
PRKDC-206ENST00000536429 ZNF526Q8TF50 670 aaPredicted RBP16.96■□□□□ 0.31
PRKDC-206ENST00000536429 C7orf43Q8WVR3 580 aa16.96■□□□□ 0.31
PRKDC-206ENST00000536429 HCLS1P14317 486 aaPredicted RBP16.95■□□□□ 0.3
PRKDC-206ENST00000536429 RNF181Q9P0P0 153 aa16.95■□□□□ 0.3
PRKDC-206ENST00000536429 TRMT112Q9UI30 125 aaKnown RBP16.95■□□□□ 0.3
PRKDC-206ENST00000536429 RIC1Q4ADV7 1423 aa16.95■□□□□ 0.3
PRKDC-206ENST00000536429 SLX4Q8IY92 1834 aa16.94■□□□□ 0.3
PRKDC-206ENST00000536429 SLC4A2P04920 1241 aa16.94■□□□□ 0.3
PRKDC-206ENST00000536429 SLC10A5Q5PT55 438 aa16.94■□□□□ 0.3
PRKDC-206ENST00000536429 MYD88Q99836 296 aa16.94■□□□□ 0.3
PRKDC-206ENST00000536429 MYH16Q9H6N6 1097 aa16.94■□□□□ 0.3
PRKDC-206ENST00000536429 RTL5Q5HYW3 569 aaPredicted RBP16.93■□□□□ 0.3
PRKDC-206ENST00000536429 FAM89AQ96GI7 184 aa16.93■□□□□ 0.3
PRKDC-206ENST00000536429 STK31Q9BXU1 1019 aa16.93■□□□□ 0.3
PRKDC-206ENST00000536429 SH3TC1Q8TE82 1336 aa16.93■□□□□ 0.3
PRKDC-206ENST00000536429 PI4KAP2A4QPH2 592 aa16.92■□□□□ 0.3
PRKDC-206ENST00000536429 HOXA10P31260 410 aaPredicted RBP16.92■□□□□ 0.3
PRKDC-206ENST00000536429 TRIM28Q13263 835 aaKnown RBP16.92■□□□□ 0.3
PRKDC-206ENST00000536429 PI4KAP1Q8N8J0 262 aa16.92■□□□□ 0.3
PRKDC-206ENST00000536429 MAP3K2Q9Y2U5 619 aa16.92■□□□□ 0.3
PRKDC-206ENST00000536429 RNF123Q5XPI4 1314 aa16.92■□□□□ 0.3
PRKDC-206ENST00000536429 JARID2Q92833 1246 aaPredicted RBP16.91■□□□□ 0.3
PRKDC-206ENST00000536429 RPGRQ92834 1020 aaKnown RBP16.91■□□□□ 0.3
PRKDC-206ENST00000536429 CDCA7LQ96GN5 454 aa16.91■□□□□ 0.3
PRKDC-206ENST00000536429 NLRP3Q96P20 1036 aa16.91■□□□□ 0.3
PRKDC-206ENST00000536429 METTL22Q9BUU2 404 aaPredicted RBP16.91■□□□□ 0.3
PRKDC-206ENST00000536429 CHMP4AQ9BY43 222 aa16.91■□□□□ 0.3
PRKDC-206ENST00000536429 ANKRD36CQ5JPF3 1778 aa16.91■□□□□ 0.3
PRKDC-206ENST00000536429 DDX58O95786 925 aaKnown RBP16.9■□□□□ 0.3
PRKDC-206ENST00000536429 IGKV5-2P06315 115 aa16.9■□□□□ 0.3
PRKDC-206ENST00000536429 LMNB1P20700 586 aa16.9■□□□□ 0.3
PRKDC-206ENST00000536429 ALDH1B1P30837 517 aa16.9■□□□□ 0.3
PRKDC-206ENST00000536429 FLIIQ13045 1269 aa16.9■□□□□ 0.3
PRKDC-206ENST00000536429 KSR2Q6VAB6 950 aa16.9■□□□□ 0.3
PRKDC-206ENST00000536429 ARFGEF2Q9Y6D5 1785 aa16.89■□□□□ 0.3
PRKDC-206ENST00000536429 CCDC93Q567U6 631 aa16.89■□□□□ 0.29
PRKDC-206ENST00000536429 RBM17Q96I25 401 aaKnown RBP16.89■□□□□ 0.29
PRKDC-206ENST00000536429 CRAMP1Q96RY5 1269 aa16.89■□□□□ 0.29
PRKDC-206ENST00000536429 TAOK3Q9H2K8 898 aa16.89■□□□□ 0.29
PRKDC-206ENST00000536429 GPBP1L1Q9HC44 474 aaPredicted RBP16.89■□□□□ 0.29
PRKDC-206ENST00000536429 E9PSI1 815 aa16.88■□□□□ 0.29
PRKDC-206ENST00000536429 SLFN5Q08AF3 891 aa16.88■□□□□ 0.29
PRKDC-206ENST00000536429 ABCC4O15439 1325 aa16.88■□□□□ 0.29
PRKDC-206ENST00000536429 SNED1Q8TER0 1413 aa16.87■□□□□ 0.29
PRKDC-206ENST00000536429 CACNA1SQ13698 1873 aa16.87■□□□□ 0.29
PRKDC-206ENST00000536429 IRS4O14654 1257 aaPredicted RBP16.87■□□□□ 0.29
PRKDC-206ENST00000536429 SOGA3Q5TF21 947 aa16.87■□□□□ 0.29
PRKDC-206ENST00000536429 ZBTB38Q8NAP3 1195 aaPredicted RBP16.87■□□□□ 0.29
PRKDC-206ENST00000536429 CCDC191Q8NCU4 936 aa16.87■□□□□ 0.29
PRKDC-206ENST00000536429 CWC25Q9NXE8 425 aaPredicted RBP16.87■□□□□ 0.29
PRKDC-206ENST00000536429 LTBP3Q9NS15 1303 aa16.87■□□□□ 0.29
PRKDC-206ENST00000536429 PPEF1O14829 653 aaPredicted RBP16.86■□□□□ 0.29
PRKDC-206ENST00000536429 FKBP5Q13451 457 aaPredicted RBP16.86■□□□□ 0.29
PRKDC-206ENST00000536429 CWF19L2Q2TBE0 894 aaKnown RBP16.86■□□□□ 0.29
PRKDC-206ENST00000536429 ZNF277Q9NRM2 450 aaPredicted RBP16.86■□□□□ 0.29
PRKDC-206ENST00000536429 SBF1O95248 1867 aa16.85■□□□□ 0.29
PRKDC-206ENST00000536429 F6X3S4 739 aa16.85■□□□□ 0.29
PRKDC-206ENST00000536429 FKBP4Q02790 459 aaKnown RBP eCLIP16.85■□□□□ 0.29
PRKDC-206ENST00000536429 NMRK2Q9NPI5 230 aa16.85■□□□□ 0.29
PRKDC-206ENST00000536429 FER1L6Q2WGJ9 1857 aa16.84■□□□□ 0.29
PRKDC-206ENST00000536429 NEURL1BA8MQ27 555 aa16.84■□□□□ 0.29
PRKDC-206ENST00000536429 KIF3CO14782 793 aa16.84■□□□□ 0.29
PRKDC-206ENST00000536429 PCCAP05165 728 aaPredicted RBP16.84■□□□□ 0.29
PRKDC-206ENST00000536429 SF3B3Q15393 1217 aaKnown RBP16.84■□□□□ 0.29
PRKDC-206ENST00000536429 TRMT2AQ8IZ69 625 aaKnown RBP16.84■□□□□ 0.29
PRKDC-206ENST00000536429 DNAAF4Q8WXU2 420 aa16.84■□□□□ 0.29
PRKDC-206ENST00000536429 COL4A1P02462 1669 aa16.84■□□□□ 0.29
PRKDC-206ENST00000536429 GRAPQ13588 217 aa16.83■□□□□ 0.28
PRKDC-206ENST00000536429 DDX46Q7L014 1031 aaKnown RBP16.83■□□□□ 0.28
PRKDC-206ENST00000536429 DDX60Q8IY21 1712 aaKnown RBP16.83■□□□□ 0.28
PRKDC-206ENST00000536429 RTKN2Q8IZC4 609 aa16.83■□□□□ 0.28
PRKDC-206ENST00000536429 GRAPLQ8TC17 118 aaPredicted RBP16.83■□□□□ 0.28
PRKDC-206ENST00000536429 CELF1Q92879 486 aaKnown RBP16.83■□□□□ 0.28
PRKDC-206ENST00000536429 NEXNQ0ZGT2 675 aa16.82■□□□□ 0.28
PRKDC-206ENST00000536429 CCDC85AQ96PX6 553 aaPredicted RBP16.82■□□□□ 0.28
PRKDC-206ENST00000536429 ATP6V0A2Q9Y487 856 aa16.82■□□□□ 0.28
PRKDC-206ENST00000536429 LAMB2P55268 1798 aa16.82■□□□□ 0.28
PRKDC-206ENST00000536429 ZC3H4Q9UPT8 1303 aaKnown RBP16.81■□□□□ 0.28
PRKDC-206ENST00000536429 C1QTNF8P60827 252 aa16.81■□□□□ 0.28
PRKDC-206ENST00000536429 MRPL50Q8N5N7 158 aaKnown RBP16.81■□□□□ 0.28
PRKDC-206ENST00000536429 PSMD1Q99460 953 aa16.81■□□□□ 0.28
PRKDC-206ENST00000536429 SEC31BQ9NQW1 1179 aa16.81■□□□□ 0.28
PRKDC-206ENST00000536429 BBOX1O75936 387 aa16.8■□□□□ 0.28
PRKDC-206ENST00000536429 GCKRQ14397 625 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms