RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CHL1O00533 1208 aa17.12■□□□□ 0.33
RTN3-207ENST00000536011 RBM17Q96I25 401 aaKnown RBP17.12■□□□□ 0.33
RTN3-207ENST00000536011 PRKRIP1Q9H875 184 aaPredicted RBP17.12■□□□□ 0.33
RTN3-207ENST00000536011 NTSR2O95665 410 aa17.11■□□□□ 0.33
RTN3-207ENST00000536011 HOXB7P09629 217 aa17.11■□□□□ 0.33
RTN3-207ENST00000536011 HOXA10P31260 410 aaPredicted RBP17.11■□□□□ 0.33
RTN3-207ENST00000536011 PDIA6Q15084 440 aa17.11■□□□□ 0.33
RTN3-207ENST00000536011 SUSD4Q5VX71 490 aa17.11■□□□□ 0.33
RTN3-207ENST00000536011 DNAJC5GQ8N7S2 189 aa17.11■□□□□ 0.33
RTN3-207ENST00000536011 TMX4Q9H1E5 349 aaPredicted RBP17.11■□□□□ 0.33
RTN3-207ENST00000536011 ADAMTS8Q9UP79 889 aa17.11■□□□□ 0.33
RTN3-207ENST00000536011 LAS1LQ9Y4W2 734 aaKnown RBP17.11■□□□□ 0.33
RTN3-207ENST00000536011 CALD1Q05682 793 aaKnown RBP17.1■□□□□ 0.33
RTN3-207ENST00000536011 LRP10Q7Z4F1 713 aa17.1■□□□□ 0.33
RTN3-207ENST00000536011 PSMD1Q99460 953 aa17.1■□□□□ 0.33
RTN3-207ENST00000536011 UTP14AQ9BVJ6 771 aaKnown RBP17.1■□□□□ 0.33
RTN3-207ENST00000536011 DDX21Q9NR30 783 aaKnown RBP eCLIP17.1■□□□□ 0.33
RTN3-207ENST00000536011 ZNF277Q9NRM2 450 aaPredicted RBP17.1■□□□□ 0.33
RTN3-207ENST00000536011 TRIM35Q9UPQ4 493 aa17.1■□□□□ 0.33
RTN3-207ENST00000536011 DDNO94850 711 aaPredicted RBP17.09■□□□□ 0.33
RTN3-207ENST00000536011 IARSP41252 1262 aaKnown RBP17.09■□□□□ 0.33
RTN3-207ENST00000536011 KLRG1Q96E93 195 aa17.09■□□□□ 0.33
RTN3-207ENST00000536011 L3MBTL3Q96JM7 780 aaPredicted RBP17.09■□□□□ 0.33
RTN3-207ENST00000536011 NLRP3Q96P20 1036 aa17.09■□□□□ 0.33
RTN3-207ENST00000536011 CRAMP1Q96RY5 1269 aa17.09■□□□□ 0.33
RTN3-207ENST00000536011 ANKRD36CQ5JPF3 1778 aa17.08■□□□□ 0.33
RTN3-207ENST00000536011 POTECB2RU33 542 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 PROSER3Q2NL68 480 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 HDGFL1Q5TGJ6 251 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 COPS6Q7L5N1 327 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 XAGE3Q8WTP9 111 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 JDP2Q8WYK2 163 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 NECTIN2Q92692 538 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 CFAP44Q96MT7 982 aa17.08■□□□□ 0.32
RTN3-207ENST00000536011 SCN4AP35499 1836 aa17.07■□□□□ 0.32
RTN3-207ENST00000536011 PPEF1O14829 653 aaPredicted RBP17.07■□□□□ 0.32
RTN3-207ENST00000536011 ANXA1P04083 346 aa17.07■□□□□ 0.32
RTN3-207ENST00000536011 AIMP1Q12904 312 aaKnown RBP17.07■□□□□ 0.32
RTN3-207ENST00000536011 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
RTN3-207ENST00000536011 SYNE4Q8N205 404 aa17.07■□□□□ 0.32
RTN3-207ENST00000536011 CHADLQ6NUI6 762 aa17.06■□□□□ 0.32
RTN3-207ENST00000536011 DBF4Q9UBU7 674 aaPredicted RBP17.06■□□□□ 0.32
RTN3-207ENST00000536011 SNED1Q8TER0 1413 aa17.05■□□□□ 0.32
RTN3-207ENST00000536011 HTRA3P83110 453 aa17.05■□□□□ 0.32
RTN3-207ENST00000536011 TCIRG1Q13488 830 aa17.05■□□□□ 0.32
RTN3-207ENST00000536011 SLC10A5Q5PT55 438 aa17.05■□□□□ 0.32
RTN3-207ENST00000536011 NLRP10Q86W26 655 aa17.05■□□□□ 0.32
RTN3-207ENST00000536011 CHPF2Q9P2E5 772 aa17.05■□□□□ 0.32
RTN3-207ENST00000536011 PCNTO95613 3336 aa17.05■□□□□ 0.32
RTN3-207ENST00000536011 SH3TC1Q8TE82 1336 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 ZNF541Q9H0D2 1346 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 FZD9O00144 591 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 LDHDQ86WU2 507 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 GPC2Q8N158 579 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 JMYQ8N9B5 988 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 CHMP4AQ9BY43 222 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 HYPKQ9NX55 129 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 TRMT112Q9UI30 125 aaKnown RBP17.04■□□□□ 0.32
RTN3-207ENST00000536011 HACL1Q9UJ83 578 aa17.04■□□□□ 0.32
RTN3-207ENST00000536011 EIF6P56537 245 aaKnown RBP17.03■□□□□ 0.32
RTN3-207ENST00000536011 GNAI1P63096 354 aa17.03■□□□□ 0.32
RTN3-207ENST00000536011 KRT24Q2M2I5 525 aa17.03■□□□□ 0.32
RTN3-207ENST00000536011 PLBD2Q8NHP8 589 aa17.03■□□□□ 0.32
RTN3-207ENST00000536011 TAF1DQ9H5J8 278 aaPredicted RBP17.03■□□□□ 0.32
RTN3-207ENST00000536011 IFT57Q9NWB7 429 aa17.03■□□□□ 0.32
RTN3-207ENST00000536011 APAF1O14727 1248 aa17.02■□□□□ 0.32
RTN3-207ENST00000536011 C3orf67Q6ZVT6 689 aa17.02■□□□□ 0.32
RTN3-207ENST00000536011 PNMA8AQ86V59 439 aaPredicted RBP17.02■□□□□ 0.32
RTN3-207ENST00000536011 LARGE2Q8N3Y3 721 aa17.02■□□□□ 0.32
RTN3-207ENST00000536011 SUPT20HQ8NEM7 779 aa17.02■□□□□ 0.32
RTN3-207ENST00000536011 VPS33BQ9H267 617 aa17.02■□□□□ 0.32
RTN3-207ENST00000536011 MBIPQ9NS73 344 aa17.02■□□□□ 0.32
RTN3-207ENST00000536011 ATP6V0A2Q9Y487 856 aa17.02■□□□□ 0.32
RTN3-207ENST00000536011 ABCC4O15439 1325 aa17.01■□□□□ 0.31
RTN3-207ENST00000536011 BBOX1O75936 387 aa17.01■□□□□ 0.31
RTN3-207ENST00000536011 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
RTN3-207ENST00000536011 IFFO2Q5TF58 517 aa17.01■□□□□ 0.31
RTN3-207ENST00000536011 DUSP27Q5VZP5 1158 aa17.01■□□□□ 0.31
RTN3-207ENST00000536011 ANKRD13DQ6ZTN6 518 aa17.01■□□□□ 0.31
RTN3-207ENST00000536011 DDX46Q7L014 1031 aaKnown RBP17.01■□□□□ 0.31
RTN3-207ENST00000536011 TCERG1O14776 1098 aaKnown RBP17■□□□□ 0.31
RTN3-207ENST00000536011 LMOD1P29536 600 aaPredicted RBP17■□□□□ 0.31
RTN3-207ENST00000536011 EPHX2P34913 555 aa17■□□□□ 0.31
RTN3-207ENST00000536011 EAPPQ56P03 285 aaPredicted RBP17■□□□□ 0.31
RTN3-207ENST00000536011 TMC4Q7Z404 712 aa17■□□□□ 0.31
RTN3-207ENST00000536011 NIM1KQ8IY84 436 aa17■□□□□ 0.31
RTN3-207ENST00000536011 CREBZFQ9NS37 354 aa17■□□□□ 0.31
RTN3-207ENST00000536011 ZNF853P0CG23 659 aa16.99■□□□□ 0.31
RTN3-207ENST00000536011 HCLS1P14317 486 aaPredicted RBP16.99■□□□□ 0.31
RTN3-207ENST00000536011 GOLGA2Q08379 1002 aa16.99■□□□□ 0.31
RTN3-207ENST00000536011 LAMB2P55268 1798 aa16.98■□□□□ 0.31
RTN3-207ENST00000536011 PPIP5K2O43314 1243 aa16.98■□□□□ 0.31
RTN3-207ENST00000536011 POTEIP0CG38 1075 aa16.98■□□□□ 0.31
RTN3-207ENST00000536011 POTEJP0CG39 1038 aa16.98■□□□□ 0.31
RTN3-207ENST00000536011 HSP90B1P14625 803 aaKnown RBP16.98■□□□□ 0.31
RTN3-207ENST00000536011 GRAPQ13588 217 aa16.98■□□□□ 0.31
RTN3-207ENST00000536011 DPP8Q6V1X1 898 aaPredicted RBP16.98■□□□□ 0.31
RTN3-207ENST00000536011 SP8Q8IXZ3 490 aa16.98■□□□□ 0.31
RTN3-207ENST00000536011 GRAPLQ8TC17 118 aaPredicted RBP16.98■□□□□ 0.31
RTN3-207ENST00000536011 CLEC11AQ9Y240 323 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms