RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 SPATA32Q96LK8 384 aa15.93■□□□□ 0.14
HDAC4-214ENST00000535493 CCDC9Q9Y3X0 531 aaKnown RBP15.93■□□□□ 0.14
HDAC4-214ENST00000535493 ITSN1Q15811 1721 aa15.93■□□□□ 0.14
HDAC4-214ENST00000535493 CCDC171Q6TFL3 1326 aa15.92■□□□□ 0.14
HDAC4-214ENST00000535493 AIMP1Q12904 312 aaKnown RBP15.92■□□□□ 0.14
HDAC4-214ENST00000535493 MPRIPQ6WCQ1 1025 aa15.92■□□□□ 0.14
HDAC4-214ENST00000535493 ERCC4Q92889 916 aaPredicted RBP15.92■□□□□ 0.14
HDAC4-214ENST00000535493 LRRC2Q9BYS8 371 aa15.92■□□□□ 0.14
HDAC4-214ENST00000535493 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.92■□□□□ 0.14
HDAC4-214ENST00000535493 V9GYY5 206 aaPredicted RBP15.92■□□□□ 0.14
HDAC4-214ENST00000535493 MAP3K5Q99683 1374 aa15.92■□□□□ 0.14
HDAC4-214ENST00000535493 SETD1BQ9UPS6 1966 aaKnown RBP15.92■□□□□ 0.14
HDAC4-214ENST00000535493 GOLGA6L6A8MZA4 724 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 CCDC144BQ3MJ40 725 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 CCDC144CPQ8IYA2 1237 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 ABTB2Q8N961 1025 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 BICD2Q8TD16 824 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 RUFY2Q8WXA3 655 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 MAP3K2Q9Y2U5 619 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 XRN1Q8IZH2 1706 aaKnown RBP15.91■□□□□ 0.14
HDAC4-214ENST00000535493 AKAP12Q02952 1782 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 SLC27A2O14975 620 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 CEBPAP49715 358 aaPredicted RBP15.91■□□□□ 0.14
HDAC4-214ENST00000535493 EIF4A1P60842 406 aaKnown RBP15.91■□□□□ 0.14
HDAC4-214ENST00000535493 ZNF589Q86UQ0 364 aaPredicted RBP15.91■□□□□ 0.14
HDAC4-214ENST00000535493 EAF2Q96CJ1 260 aaPredicted RBP15.91■□□□□ 0.14
HDAC4-214ENST00000535493 FTOQ9C0B1 505 aaKnown RBP eCLIP15.91■□□□□ 0.14
HDAC4-214ENST00000535493 AMOTL2Q9Y2J4 779 aa15.91■□□□□ 0.14
HDAC4-214ENST00000535493 NCBP1Q09161 790 aaKnown RBP15.9■□□□□ 0.14
HDAC4-214ENST00000535493 SH2B1Q9NRF2 756 aaPredicted RBP15.9■□□□□ 0.14
HDAC4-214ENST00000535493 TNNT1P13805 278 aa15.9■□□□□ 0.14
HDAC4-214ENST00000535493 CACTINQ8WUQ7 758 aaKnown RBP15.9■□□□□ 0.14
HDAC4-214ENST00000535493 RGPD1P0DJD0 1748 aa15.9■□□□□ 0.14
HDAC4-214ENST00000535493 A0A0U1RQG5 324 aaPredicted RBP15.89■□□□□ 0.13
HDAC4-214ENST00000535493 ZNF165P49910 485 aa15.89■□□□□ 0.13
HDAC4-214ENST00000535493 PGBD1Q96JS3 809 aa15.89■□□□□ 0.13
HDAC4-214ENST00000535493 ZSCAN31Q96LW9 406 aaPredicted RBP15.89■□□□□ 0.13
HDAC4-214ENST00000535493 USP27XA6NNY8 438 aa15.89■□□□□ 0.13
HDAC4-214ENST00000535493 ZSCAN25Q6NSZ9 544 aa15.89■□□□□ 0.13
HDAC4-214ENST00000535493 LEO1Q8WVC0 666 aaPredicted RBP15.89■□□□□ 0.13
HDAC4-214ENST00000535493 FSD1Q9BTV5 496 aa15.89■□□□□ 0.13
HDAC4-214ENST00000535493 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.89■□□□□ 0.13
HDAC4-214ENST00000535493 EPB41L2O43491 1005 aaKnown RBP15.88■□□□□ 0.13
HDAC4-214ENST00000535493 SASH1O94885 1247 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 HDGFP51858 240 aaKnown RBP15.88■□□□□ 0.13
HDAC4-214ENST00000535493 TOB2Q14106 344 aaPredicted RBP15.88■□□□□ 0.13
HDAC4-214ENST00000535493 BLOC1S2Q6QNY1 142 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 LRRC59Q96AG4 307 aaKnown RBP15.88■□□□□ 0.13
HDAC4-214ENST00000535493 NPHP1O15259 732 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 TPD52L1Q16890 204 aaPredicted RBP15.88■□□□□ 0.13
HDAC4-214ENST00000535493 ANKRD7Q92527 254 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 MAP4K1Q92918 833 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 SYTL4Q96C24 671 aaPredicted RBP15.88■□□□□ 0.13
HDAC4-214ENST00000535493 SIRT1Q96EB6 747 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 CLIP2Q9UDT6 1046 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 ADCY9O60503 1353 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 HTATSF1O43719 755 aaKnown RBP15.88■□□□□ 0.13
HDAC4-214ENST00000535493 ZNF75DP51815 510 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 NBPF6Q5VWK0 638 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 NBPF4Q96M43 638 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 TTC41PQ6P2S7 1318 aa15.88■□□□□ 0.13
HDAC4-214ENST00000535493 BTBD11A6QL63 1104 aa15.87■□□□□ 0.13
HDAC4-214ENST00000535493 CCDC129Q6ZRS4 1044 aa15.87■□□□□ 0.13
HDAC4-214ENST00000535493 EVI5LQ96CN4 794 aa15.87■□□□□ 0.13
HDAC4-214ENST00000535493 TRMT1Q9NXH9 659 aaKnown RBP15.87■□□□□ 0.13
HDAC4-214ENST00000535493 CTIFO43310 598 aaKnown RBP15.87■□□□□ 0.13
HDAC4-214ENST00000535493 TECPR2O15040 1411 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 TEFQ10587 303 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 SLFNL1Q499Z3 407 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 HSP90AB4PQ58FF6 505 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 FILIP1Q7Z7B0 1213 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 SEC62Q99442 399 aaKnown RBP15.86■□□□□ 0.13
HDAC4-214ENST00000535493 TM6SF1Q9BZW5 370 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 BICC1Q9H694 974 aaKnown RBP15.86■□□□□ 0.13
HDAC4-214ENST00000535493 TSPOAP1O95153 1857 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 SUCLG2Q96I99 432 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 USP16Q9Y5T5 823 aa15.86■□□□□ 0.13
HDAC4-214ENST00000535493 FAM208AQ9UK61 1670 aaKnown RBP15.85■□□□□ 0.13
HDAC4-214ENST00000535493 C11orf57Q6ZUT1 292 aaPredicted RBP15.85■□□□□ 0.13
HDAC4-214ENST00000535493 BRF1Q92994 677 aa15.85■□□□□ 0.13
HDAC4-214ENST00000535493 GPATCH3Q96I76 525 aa15.85■□□□□ 0.13
HDAC4-214ENST00000535493 KAZALD1Q96I82 304 aa15.85■□□□□ 0.13
HDAC4-214ENST00000535493 ADAMTS13Q76LX8 1427 aa15.85■□□□□ 0.13
HDAC4-214ENST00000535493 TMEM2Q9UHN6 1383 aa15.85■□□□□ 0.13
HDAC4-214ENST00000535493 HSP90B1P14625 803 aaKnown RBP15.85■□□□□ 0.13
HDAC4-214ENST00000535493 SPATA31D1Q6ZQQ2 1576 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 TTC21AQ8NDW8 1320 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 RPS6KB1P23443 525 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 PIP4K2AP48426 406 aaPredicted RBP15.84■□□□□ 0.13
HDAC4-214ENST00000535493 UTP14CQ5TAP6 766 aaKnown RBP15.84■□□□□ 0.13
HDAC4-214ENST00000535493 PLA2G4DQ86XP0 818 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 PPP6R1Q9UPN7 881 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 PTPRUQ92729 1446 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 GUCY1B3Q02153 619 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 SCAND2PQ9GZW5 306 aaPredicted RBP15.84■□□□□ 0.13
HDAC4-214ENST00000535493 CLSTN2Q9H4D0 955 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 TAOK2Q9UL54 1235 aa15.84■□□□□ 0.13
HDAC4-214ENST00000535493 NAP1L2Q9ULW6 460 aaPredicted RBP15.84■□□□□ 0.13
HDAC4-214ENST00000535493 TPM3P06753 285 aa15.83■□□□□ 0.13
HDAC4-214ENST00000535493 G3BP1Q13283 466 aaKnown RBP eCLIP15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms