RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 PSMG3-AS1Q96PY0 264 aa10.35□□□□□ -0.75
SYNE1-232ENST00000535081 UBE2OQ9C0C9 1292 aaKnown RBP10.35□□□□□ -0.75
SYNE1-232ENST00000535081 BTLAQ7Z6A9 289 aa10.34□□□□□ -0.75
SYNE1-232ENST00000535081 RBM19Q9Y4C8 960 aaKnown RBP10.34□□□□□ -0.75
SYNE1-232ENST00000535081 C9orf172C9J069 976 aa10.33□□□□□ -0.76
SYNE1-232ENST00000535081 HIF1AQ16665 826 aa10.33□□□□□ -0.76
SYNE1-232ENST00000535081 SLC6A14Q9UN76 642 aa10.33□□□□□ -0.76
SYNE1-232ENST00000535081 DKK1O94907 266 aa10.32□□□□□ -0.76
SYNE1-232ENST00000535081 STAG2Q8N3U4 1231 aa10.32□□□□□ -0.76
SYNE1-232ENST00000535081 JPH1Q9HDC5 661 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-232ENST00000535081 A0A0A0MRY4 1105 aa10.31□□□□□ -0.76
SYNE1-232ENST00000535081 ELNP15502 786 aa10.31□□□□□ -0.76
SYNE1-232ENST00000535081 FLIIQ13045 1269 aa10.31□□□□□ -0.76
SYNE1-232ENST00000535081 ADGRE1Q14246 886 aa10.31□□□□□ -0.76
SYNE1-232ENST00000535081 C2orf49Q9BVC5 232 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-232ENST00000535081 IGFLR1Q9H665 355 aa10.31□□□□□ -0.76
SYNE1-232ENST00000535081 EFCC1Q9HA90 598 aa10.31□□□□□ -0.76
SYNE1-232ENST00000535081 ATAD2Q6PL18 1390 aa10.3□□□□□ -0.76
SYNE1-232ENST00000535081 SELPP16109 830 aa10.3□□□□□ -0.76
SYNE1-232ENST00000535081 MBTPS1Q14703 1052 aa10.3□□□□□ -0.76
SYNE1-232ENST00000535081 PRSS36Q5K4E3 855 aa10.3□□□□□ -0.76
SYNE1-232ENST00000535081 NGLY1Q96IV0 654 aa10.3□□□□□ -0.76
SYNE1-232ENST00000535081 RAC1P63000 192 aa10.29□□□□□ -0.76
SYNE1-232ENST00000535081 GAS2L2Q8NHY3 880 aa10.29□□□□□ -0.76
SYNE1-232ENST00000535081 NUDT8Q8WV74 236 aa10.29□□□□□ -0.76
SYNE1-232ENST00000535081 SCG3Q8WXD2 468 aaKnown RBP10.29□□□□□ -0.76
SYNE1-232ENST00000535081 IER5Q5VY09 327 aa10.28□□□□□ -0.76
SYNE1-232ENST00000535081 CHMP7Q8WUX9 453 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-232ENST00000535081 DNAJB12Q9NXW2 375 aaKnown RBP10.28□□□□□ -0.76
SYNE1-232ENST00000535081 NAGPAQ9UK23 515 aa10.28□□□□□ -0.76
SYNE1-232ENST00000535081 RASA1P20936 1047 aa10.27□□□□□ -0.77
SYNE1-232ENST00000535081 SEC13P55735 322 aa10.27□□□□□ -0.77
SYNE1-232ENST00000535081 PSAPL1Q6NUJ1 521 aa10.27□□□□□ -0.77
SYNE1-232ENST00000535081 TXNRD3Q86VQ6 643 aa10.27□□□□□ -0.77
SYNE1-232ENST00000535081 PNMA5Q96PV4 448 aa10.27□□□□□ -0.77
SYNE1-232ENST00000535081 H2AFB1P0C5Y9 115 aa10.26□□□□□ -0.77
SYNE1-232ENST00000535081 H2AFB2P0C5Z0 115 aa10.26□□□□□ -0.77
SYNE1-232ENST00000535081 NRG1Q02297 640 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-232ENST00000535081 RTN1Q16799 776 aa10.26□□□□□ -0.77
SYNE1-232ENST00000535081 ARTNQ5T4W7 220 aa10.26□□□□□ -0.77
SYNE1-232ENST00000535081 SHISA2Q6UWI4 295 aa10.26□□□□□ -0.77
SYNE1-232ENST00000535081 LENG1Q96BZ8 264 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-232ENST00000535081 GSX2Q9BZM3 304 aa10.26□□□□□ -0.77
SYNE1-232ENST00000535081 ZFP64Q9NPA5 681 aa10.26□□□□□ -0.77
SYNE1-232ENST00000535081 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-232ENST00000535081 TGFBR3LH3BV60 316 aa10.25□□□□□ -0.77
SYNE1-232ENST00000535081 NFKB1P19838 968 aa10.25□□□□□ -0.77
SYNE1-232ENST00000535081 AFF1P51825 1210 aaKnown RBP10.25□□□□□ -0.77
SYNE1-232ENST00000535081 CCINQ13939 588 aa10.25□□□□□ -0.77
SYNE1-232ENST00000535081 FMR1NBQ8N0W7 255 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-232ENST00000535081 MAFBQ9Y5Q3 323 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-232ENST00000535081 RGS9O75916 674 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-232ENST00000535081 DMRTC2Q8IXT2 367 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-232ENST00000535081 GLMNQ92990 594 aa10.22□□□□□ -0.77
SYNE1-232ENST00000535081 KRTAP9-2Q9BYQ4 174 aa10.22□□□□□ -0.77
SYNE1-232ENST00000535081 TFIP11Q9UBB9 837 aaKnown RBP10.22□□□□□ -0.77
SYNE1-232ENST00000535081 DMGDHQ9UI17 866 aaKnown RBP10.22□□□□□ -0.77
SYNE1-232ENST00000535081 USP21Q9UK80 565 aa10.22□□□□□ -0.77
SYNE1-232ENST00000535081 BCS1LQ9Y276 419 aa10.22□□□□□ -0.77
SYNE1-232ENST00000535081 EPB42P16452 691 aa10.21□□□□□ -0.77
SYNE1-232ENST00000535081 HINFPQ9BQA5 517 aa10.21□□□□□ -0.77
SYNE1-232ENST00000535081 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-232ENST00000535081 LARP1Q6PKG0 1096 aaKnown RBP10.2□□□□□ -0.78
SYNE1-232ENST00000535081 ILDR2Q71H61 639 aa10.2□□□□□ -0.78
SYNE1-232ENST00000535081 FAM35AQ86V20 835 aa10.2□□□□□ -0.78
SYNE1-232ENST00000535081 TP53INP1Q96A56 240 aa10.2□□□□□ -0.78
SYNE1-232ENST00000535081 GRNP28799 593 aaKnown RBP10.19□□□□□ -0.78
SYNE1-232ENST00000535081 PCSK7Q16549 785 aa10.19□□□□□ -0.78
SYNE1-232ENST00000535081 LGR5O75473 907 aa10.18□□□□□ -0.78
SYNE1-232ENST00000535081 CPB1P15086 417 aa10.18□□□□□ -0.78
SYNE1-232ENST00000535081 IGFBP4P22692 258 aa10.18□□□□□ -0.78
SYNE1-232ENST00000535081 LRP8Q14114 963 aa10.18□□□□□ -0.78
SYNE1-232ENST00000535081 CRTC2Q53ET0 693 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-232ENST00000535081 MSL1Q68DK7 614 aa10.18□□□□□ -0.78
SYNE1-232ENST00000535081 NBPF11Q86T75 865 aa10.18□□□□□ -0.78
SYNE1-232ENST00000535081 SSBP4Q9BWG4 385 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-232ENST00000535081 MAP3K6O95382 1288 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 INPP5BP32019 993 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 IDH3AP50213 366 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 DPYDQ12882 1025 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 PTK7Q13308 1070 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 DTWD1Q8N5C7 304 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 LPIN3Q9BQK8 851 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 FRRS1LQ9P0K9 344 aa10.17□□□□□ -0.78
SYNE1-232ENST00000535081 PRKCSHP14314 528 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-232ENST00000535081 GRIK5Q16478 980 aa10.16□□□□□ -0.78
SYNE1-232ENST00000535081 KRT25Q7Z3Z0 450 aa10.16□□□□□ -0.78
SYNE1-232ENST00000535081 KLK14Q9P0G3 267 aa10.16□□□□□ -0.78
SYNE1-232ENST00000535081 KRTAP9-6A0A140TA67 174 aa10.15□□□□□ -0.78
SYNE1-232ENST00000535081 DHX32Q7L7V1 743 aaKnown RBP10.15□□□□□ -0.78
SYNE1-232ENST00000535081 PROSER2Q86WR7 435 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-232ENST00000535081 CLUAP1Q96AJ1 413 aa10.15□□□□□ -0.78
SYNE1-232ENST00000535081 ZFATQ9P243 1243 aa10.15□□□□□ -0.78
SYNE1-232ENST00000535081 USP17L15C9J2P7 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L10C9JJH3 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L13C9JLJ4 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L12C9JPN9 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L11C9JVI0 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L21D6R901 530 aa10.14□□□□□ -0.79
SYNE1-232ENST00000535081 USP17L18D6R9N7 530 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms