RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 STK24Q9Y6E0 443 aa9.03□□□□□ -0.96
CD44-237ENST00000534082 TLL2Q9Y6L7 1015 aa9.03□□□□□ -0.96
CD44-237ENST00000534082 WASHC2AQ641Q2 1341 aa9.03□□□□□ -0.96
CD44-237ENST00000534082 ARFGEF2Q9Y6D5 1785 aa9.02□□□□□ -0.97
CD44-237ENST00000534082 BRPF1P55201 1214 aaPredicted RBP9.02□□□□□ -0.97
CD44-237ENST00000534082 LCE2DQ5TA82 110 aaPredicted RBP9.02□□□□□ -0.97
CD44-237ENST00000534082 BICDL1Q6ZP65 573 aa9.02□□□□□ -0.97
CD44-237ENST00000534082 DNAJC10Q8IXB1 793 aa9.02□□□□□ -0.97
CD44-237ENST00000534082 BRIP1Q9BX63 1249 aa9.02□□□□□ -0.97
CD44-237ENST00000534082 BOLA1Q9Y3E2 137 aa9.02□□□□□ -0.97
CD44-237ENST00000534082 SLX4Q8IY92 1834 aa9.02□□□□□ -0.97
CD44-237ENST00000534082 CACNA1SQ13698 1873 aa9.02□□□□□ -0.97
CD44-237ENST00000534082 RGL2O15211 777 aa9.01□□□□□ -0.97
CD44-237ENST00000534082 CCDC93Q567U6 631 aa9.01□□□□□ -0.97
CD44-237ENST00000534082 PRR5LQ6MZQ0 368 aa9.01□□□□□ -0.97
CD44-237ENST00000534082 ZNF530Q6P9A1 599 aaPredicted RBP9.01□□□□□ -0.97
CD44-237ENST00000534082 CCDC24Q8N4L8 307 aa9.01□□□□□ -0.97
CD44-237ENST00000534082 CNKSR1Q969H4 720 aa9.01□□□□□ -0.97
CD44-237ENST00000534082 GCC1Q96CN9 775 aa9.01□□□□□ -0.97
CD44-237ENST00000534082 ZNF277Q9NRM2 450 aaPredicted RBP9.01□□□□□ -0.97
CD44-237ENST00000534082 ZBTB1Q9Y2K1 713 aa9.01□□□□□ -0.97
CD44-237ENST00000534082 SCN7AQ01118 1682 aa9□□□□□ -0.97
CD44-237ENST00000534082 TRAF5O00463 557 aa9□□□□□ -0.97
CD44-237ENST00000534082 CYP19A1P11511 503 aaPredicted RBP9□□□□□ -0.97
CD44-237ENST00000534082 CST9Q5W186 159 aa9□□□□□ -0.97
CD44-237ENST00000534082 STYK1Q6J9G0 422 aa9□□□□□ -0.97
CD44-237ENST00000534082 NFATC2IPQ8NCF5 419 aa9□□□□□ -0.97
CD44-237ENST00000534082 TESK2Q96S53 571 aa9□□□□□ -0.97
CD44-237ENST00000534082 ST20-MTHFSA0A0A6YYL1 179 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 STK25O00506 426 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 SRGNP10124 158 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 MTHFSP49914 203 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 FKBP4Q02790 459 aaKnown RBP eCLIP8.99□□□□□ -0.97
CD44-237ENST00000534082 EIF4A2Q14240 407 aaKnown RBP8.99□□□□□ -0.97
CD44-237ENST00000534082 TBC1D9BQ66K14 1250 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 CIAPIN1Q6FI81 312 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 GPC2Q8N158 579 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 SIN3AQ96ST3 1273 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 TRPM7Q96QT4 1865 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 BCORQ6W2J9 1755 aa8.99□□□□□ -0.97
CD44-237ENST00000534082 FZD9O00144 591 aa8.98□□□□□ -0.97
CD44-237ENST00000534082 PLEKHO1Q53GL0 409 aaPredicted RBP8.98□□□□□ -0.97
CD44-237ENST00000534082 HABP4Q5JVS0 413 aaKnown RBP8.98□□□□□ -0.97
CD44-237ENST00000534082 C1orf141Q5JVX7 400 aa8.98□□□□□ -0.97
CD44-237ENST00000534082 SAPCD2Q86UD0 394 aa8.98□□□□□ -0.97
CD44-237ENST00000534082 NBPF15Q8N660 670 aa8.98□□□□□ -0.97
CD44-237ENST00000534082 MASTLQ96GX5 879 aa8.98□□□□□ -0.97
CD44-237ENST00000534082 SNPHO15079 494 aa8.97□□□□□ -0.97
CD44-237ENST00000534082 ST18O60284 1047 aa8.97□□□□□ -0.97
CD44-237ENST00000534082 LMOD1P29536 600 aaPredicted RBP8.97□□□□□ -0.97
CD44-237ENST00000534082 IARSP41252 1262 aaKnown RBP8.97□□□□□ -0.97
CD44-237ENST00000534082 CNBD1Q8NA66 436 aa8.97□□□□□ -0.97
CD44-237ENST00000534082 C7orf43Q8WVR3 580 aa8.97□□□□□ -0.97
CD44-237ENST00000534082 HHIPL1Q96JK4 782 aa8.97□□□□□ -0.97
CD44-237ENST00000534082 PLSCR2Q9NRY7 297 aa8.97□□□□□ -0.97
CD44-237ENST00000534082 GJA3Q9Y6H8 435 aa8.97□□□□□ -0.97
CD44-237ENST00000534082 MKI67P46013 3256 aaKnown RBP8.96□□□□□ -0.97
CD44-237ENST00000534082 NPHP1O15259 732 aa8.96□□□□□ -0.98
CD44-237ENST00000534082 CELF2O95319 508 aaKnown RBP8.96□□□□□ -0.98
CD44-237ENST00000534082 CANXP27824 592 aaKnown RBP8.96□□□□□ -0.98
CD44-237ENST00000534082 SCNN1DP51172 638 aa8.96□□□□□ -0.98
CD44-237ENST00000534082 ST5P78524 1137 aa8.96□□□□□ -0.98
CD44-237ENST00000534082 NEUROD1Q13562 356 aa8.96□□□□□ -0.98
CD44-237ENST00000534082 AMOTQ4VCS5 1084 aa8.96□□□□□ -0.98
CD44-237ENST00000534082 MRC1P22897 1456 aa8.96□□□□□ -0.98
CD44-237ENST00000534082 COL4A5P29400 1685 aa8.95□□□□□ -0.98
CD44-237ENST00000534082 SCN11AQ9UI33 1791 aa8.95□□□□□ -0.98
CD44-237ENST00000534082 EPS15P42566 896 aa8.95□□□□□ -0.98
CD44-237ENST00000534082 NOGQ13253 232 aa8.95□□□□□ -0.98
CD44-237ENST00000534082 OLFM4Q6UX06 510 aa8.95□□□□□ -0.98
CD44-237ENST00000534082 USP50Q70EL3 339 aaPredicted RBP8.95□□□□□ -0.98
CD44-237ENST00000534082 POLKQ9UBT6 870 aa8.95□□□□□ -0.98
CD44-237ENST00000534082 A0A087WZG4 1122 aa8.94□□□□□ -0.98
CD44-237ENST00000534082 SLC24A1O60721 1099 aa8.94□□□□□ -0.98
CD44-237ENST00000534082 EIF5P55010 431 aaKnown RBP8.94□□□□□ -0.98
CD44-237ENST00000534082 EIF6P56537 245 aaKnown RBP8.94□□□□□ -0.98
CD44-237ENST00000534082 RTKN2Q8IZC4 609 aa8.94□□□□□ -0.98
CD44-237ENST00000534082 ZIC5Q96T25 663 aa8.94□□□□□ -0.98
CD44-237ENST00000534082 SAGE1Q9NXZ1 904 aa8.94□□□□□ -0.98
CD44-237ENST00000534082 NPR1P16066 1061 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 SLC39A6Q13433 755 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 CTU1Q7Z7A3 348 aaKnown RBP8.93□□□□□ -0.98
CD44-237ENST00000534082 AEBP1Q8IUX7 1158 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 SYNE4Q8N205 404 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 JDP2Q8WYK2 163 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 MS4A4AQ96JQ5 239 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 SETDB2Q96T68 719 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 CARD14Q9BXL6 1004 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 GLIS2Q9BZE0 524 aaPredicted RBP8.93□□□□□ -0.98
CD44-237ENST00000534082 ZNF408Q9H9D4 720 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 SLC52A2Q9HAB3 445 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 HPS5Q9UPZ3 1129 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 SNED1Q8TER0 1413 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 SZT2Q5T011 3432 aa8.93□□□□□ -0.98
CD44-237ENST00000534082 FXR1P51114 621 aaKnown RBP eCLIP8.92□□□□□ -0.98
CD44-237ENST00000534082 AKAP4Q5JQC9 854 aa8.92□□□□□ -0.98
CD44-237ENST00000534082 MICALL2Q8IY33 904 aa8.92□□□□□ -0.98
CD44-237ENST00000534082 VSIG10Q8N0Z9 540 aa8.92□□□□□ -0.98
CD44-237ENST00000534082 TBC1D2BQ9UPU7 963 aa8.92□□□□□ -0.98
CD44-237ENST00000534082 ZNF330Q9Y3S2 320 aaPredicted RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms