RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DLEC1Q9Y238 1755 aa16.69■□□□□ 0.26
VPS28-216ENST00000533806 ADCY9O60503 1353 aa16.68■□□□□ 0.26
VPS28-216ENST00000533806 YY1P25490 414 aa16.68■□□□□ 0.26
VPS28-216ENST00000533806 GTF2E1P29083 439 aaPredicted RBP16.68■□□□□ 0.26
VPS28-216ENST00000533806 KSR2Q6VAB6 950 aa16.68■□□□□ 0.26
VPS28-216ENST00000533806 RIC3Q7Z5B4 369 aa16.68■□□□□ 0.26
VPS28-216ENST00000533806 MASTLQ96GX5 879 aa16.68■□□□□ 0.26
VPS28-216ENST00000533806 COL11A2P13942 1736 aaPredicted RBP16.67■□□□□ 0.26
VPS28-216ENST00000533806 PI4KAP2A4QPH2 592 aa16.67■□□□□ 0.26
VPS28-216ENST00000533806 NPR1P16066 1061 aa16.67■□□□□ 0.26
VPS28-216ENST00000533806 HOXA10P31260 410 aaPredicted RBP16.67■□□□□ 0.26
VPS28-216ENST00000533806 C3orf67Q6ZVT6 689 aa16.67■□□□□ 0.26
VPS28-216ENST00000533806 SYNE4Q8N205 404 aa16.67■□□□□ 0.26
VPS28-216ENST00000533806 PI4KAP1Q8N8J0 262 aa16.67■□□□□ 0.26
VPS28-216ENST00000533806 C7orf43Q8WVR3 580 aa16.67■□□□□ 0.26
VPS28-216ENST00000533806 METTL22Q9BUU2 404 aaPredicted RBP16.67■□□□□ 0.26
VPS28-216ENST00000533806 ATP5J2-PTCD1G3V325 749 aa16.66■□□□□ 0.26
VPS28-216ENST00000533806 DDX58O95786 925 aaKnown RBP16.66■□□□□ 0.26
VPS28-216ENST00000533806 FLIIQ13045 1269 aa16.66■□□□□ 0.26
VPS28-216ENST00000533806 CNKSR1Q969H4 720 aa16.66■□□□□ 0.26
VPS28-216ENST00000533806 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.262e-11■■■■■ 40.7
VPS28-216ENST00000533806 TRMT112Q9UI30 125 aaKnown RBP16.65■□□□□ 0.26
VPS28-216ENST00000533806 MAP3K2Q9Y2U5 619 aa16.65■□□□□ 0.26
VPS28-216ENST00000533806 ARFGEF1Q9Y6D6 1849 aa16.65■□□□□ 0.26
VPS28-216ENST00000533806 TNRC6CQ9HCJ0 1690 aaKnown RBP16.65■□□□□ 0.26
VPS28-216ENST00000533806 SH3TC1Q8TE82 1336 aa16.65■□□□□ 0.26
VPS28-216ENST00000533806 ANKRD36CQ5JPF3 1778 aa16.64■□□□□ 0.25
VPS28-216ENST00000533806 IGKV5-2P06315 115 aa16.64■□□□□ 0.25
VPS28-216ENST00000533806 PRPF40BQ6NWY9 871 aaKnown RBP16.64■□□□□ 0.25
VPS28-216ENST00000533806 ARHGAP27Q6ZUM4 889 aa16.64■□□□□ 0.25
VPS28-216ENST00000533806 CCDC191Q8NCU4 936 aa16.64■□□□□ 0.25
VPS28-216ENST00000533806 MYD88Q99836 296 aa16.64■□□□□ 0.25
VPS28-216ENST00000533806 ARFGEF2Q9Y6D5 1785 aa16.64■□□□□ 0.25
VPS28-216ENST00000533806 FAM89AQ96GI7 184 aa16.63■□□□□ 0.25
VPS28-216ENST00000533806 NLRP3Q96P20 1036 aa16.63■□□□□ 0.25
VPS28-216ENST00000533806 C21orf2O43822 256 aa16.62■□□□□ 0.25
VPS28-216ENST00000533806 HCLS1P14317 486 aaPredicted RBP16.62■□□□□ 0.25
VPS28-216ENST00000533806 PRELPP51888 382 aa16.62■□□□□ 0.25
VPS28-216ENST00000533806 ZBTB38Q8NAP3 1195 aaPredicted RBP16.62■□□□□ 0.25
VPS28-216ENST00000533806 ZNF428Q96B54 188 aa16.62■□□□□ 0.25
VPS28-216ENST00000533806 CRAMP1Q96RY5 1269 aa16.62■□□□□ 0.25
VPS28-216ENST00000533806 CHD4Q14839 1912 aa16.61■□□□□ 0.25
VPS28-216ENST00000533806 NFKBIEO00221 500 aa16.61■□□□□ 0.25
VPS28-216ENST00000533806 ALDH1B1P30837 517 aa16.61■□□□□ 0.25
VPS28-216ENST00000533806 PCCAP05165 728 aaPredicted RBP16.6■□□□□ 0.25
VPS28-216ENST00000533806 FKBP5Q13451 457 aaPredicted RBP16.6■□□□□ 0.25
VPS28-216ENST00000533806 MRPL50Q8N5N7 158 aaKnown RBP16.6■□□□□ 0.25
VPS28-216ENST00000533806 DNAAF4Q8WXU2 420 aa16.6■□□□□ 0.25
VPS28-216ENST00000533806 CWC25Q9NXE8 425 aaPredicted RBP16.6■□□□□ 0.25
VPS28-216ENST00000533806 SLX4Q8IY92 1834 aa16.6■□□□□ 0.25
VPS28-216ENST00000533806 SNED1Q8TER0 1413 aa16.6■□□□□ 0.25
VPS28-216ENST00000533806 NEURL1BA8MQ27 555 aa16.59■□□□□ 0.25
VPS28-216ENST00000533806 CT47B1P0C2W7 299 aaPredicted RBP16.59■□□□□ 0.25
VPS28-216ENST00000533806 SF3B3Q15393 1217 aaKnown RBP16.59■□□□□ 0.25
VPS28-216ENST00000533806 ZNF784Q8NCA9 323 aaPredicted RBP16.59■□□□□ 0.25
VPS28-216ENST00000533806 SSH1Q8WYL5 1049 aa16.59■□□□□ 0.25
VPS28-216ENST00000533806 IRS4O14654 1257 aaPredicted RBP16.58■□□□□ 0.24
VPS28-216ENST00000533806 HNRNPUQ00839 825 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS28-216ENST00000533806 RASSF7Q02833 373 aa16.58■□□□□ 0.24
VPS28-216ENST00000533806 CWF19L2Q2TBE0 894 aaKnown RBP16.58■□□□□ 0.24
VPS28-216ENST00000533806 LINS1Q8NG48 757 aa16.58■□□□□ 0.24
VPS28-216ENST00000533806 RPGRQ92834 1020 aaKnown RBP16.58■□□□□ 0.24
VPS28-216ENST00000533806 RBM17Q96I25 401 aaKnown RBP16.58■□□□□ 0.24
VPS28-216ENST00000533806 LTBP3Q9NS15 1303 aa16.58■□□□□ 0.24
VPS28-216ENST00000533806 H7C1W4 665 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 NEXNQ0ZGT2 675 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 ALDH1L2Q3SY69 923 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 RTL5Q5HYW3 569 aaPredicted RBP16.57■□□□□ 0.24
VPS28-216ENST00000533806 BEND3Q5T5X7 828 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 SOGA3Q5TF21 947 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 C9orf131Q5VYM1 1079 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 OLFM4Q6UX06 510 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 ZNF219Q9P2Y4 722 aaPredicted RBP16.57■□□□□ 0.24
VPS28-216ENST00000533806 CACNA1FO60840 1977 aa16.57■□□□□ 0.24
VPS28-216ENST00000533806 ABCC4O15439 1325 aa16.56■□□□□ 0.24
VPS28-216ENST00000533806 CDHR2Q9BYE9 1310 aa16.56■□□□□ 0.24
VPS28-216ENST00000533806 F6X3S4 739 aa16.56■□□□□ 0.24
VPS28-216ENST00000533806 GCKRQ14397 625 aa16.56■□□□□ 0.24
VPS28-216ENST00000533806 LMNB1P20700 586 aa16.55■□□□□ 0.24
VPS28-216ENST00000533806 BRPF1P55201 1214 aaPredicted RBP16.55■□□□□ 0.24
VPS28-216ENST00000533806 CASP7P55210 303 aa16.55■□□□□ 0.24
VPS28-216ENST00000533806 CCDC93Q567U6 631 aa16.55■□□□□ 0.24
VPS28-216ENST00000533806 SLC51AQ86UW1 340 aa16.55■□□□□ 0.24
VPS28-216ENST00000533806 JARID2Q92833 1246 aaPredicted RBP16.55■□□□□ 0.24
VPS28-216ENST00000533806 DDX60Q8IY21 1712 aaKnown RBP16.55■□□□□ 0.24
VPS28-216ENST00000533806 ZBED9Q6R2W3 1325 aa16.54■□□□□ 0.24
VPS28-216ENST00000533806 BBOX1O75936 387 aa16.54■□□□□ 0.24
VPS28-216ENST00000533806 CC2D2BQ6DHV5 1058 aa16.54■□□□□ 0.24
VPS28-216ENST00000533806 PTPRCP08575 1304 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 FER1L6Q2WGJ9 1857 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 PDE8AO60658 829 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 HSP90B1P14625 803 aaKnown RBP16.53■□□□□ 0.24
VPS28-216ENST00000533806 GRAPQ13588 217 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 RTKN2Q8IZC4 609 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 GRAPLQ8TC17 118 aaPredicted RBP16.53■□□□□ 0.24
VPS28-216ENST00000533806 TAOK3Q9H2K8 898 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 RNF181Q9P0P0 153 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 ATP6V0A2Q9Y487 856 aa16.53■□□□□ 0.24
VPS28-216ENST00000533806 LAMB2P55268 1798 aa16.52■□□□□ 0.24
VPS28-216ENST00000533806 PPEF1O14829 653 aaPredicted RBP16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms