RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 CDCA8Q53HL2 280 aa11.35□□□□□ -0.59
CD44-232ENST00000531118 CNBD1Q8NA66 436 aa11.35□□□□□ -0.59
CD44-232ENST00000531118 TMEM106CQ9BVX2 250 aa11.35□□□□□ -0.59
CD44-232ENST00000531118 TRPC6Q9Y210 931 aa11.35□□□□□ -0.59
CD44-232ENST00000531118 COL4A5P29400 1685 aa11.35□□□□□ -0.59
CD44-232ENST00000531118 SRGNP10124 158 aa11.34□□□□□ -0.59
CD44-232ENST00000531118 CANXP27824 592 aaKnown RBP11.34□□□□□ -0.59
CD44-232ENST00000531118 FKBP4Q02790 459 aaKnown RBP eCLIP11.34□□□□□ -0.59
CD44-232ENST00000531118 SLC39A6Q13433 755 aa11.34□□□□□ -0.59
CD44-232ENST00000531118 PRPF38BQ5VTL8 546 aaKnown RBP11.34□□□□□ -0.59
CD44-232ENST00000531118 MASTLQ96GX5 879 aa11.34□□□□□ -0.59
CD44-232ENST00000531118 GPR101Q96P66 508 aaPredicted RBP11.34□□□□□ -0.59
CD44-232ENST00000531118 ZNF277Q9NRM2 450 aaPredicted RBP11.34□□□□□ -0.59
CD44-232ENST00000531118 SNED1Q8TER0 1413 aa11.34□□□□□ -0.59
CD44-232ENST00000531118 A0A087WZG4 1122 aa11.33□□□□□ -0.6
CD44-232ENST00000531118 CA12O43570 354 aa11.33□□□□□ -0.6
CD44-232ENST00000531118 AOC2O75106 756 aa11.33□□□□□ -0.6
CD44-232ENST00000531118 TNNT2P45379 298 aaPredicted RBP11.33□□□□□ -0.6
CD44-232ENST00000531118 EIF5P55010 431 aaKnown RBP11.33□□□□□ -0.6
CD44-232ENST00000531118 ST5P78524 1137 aa11.33□□□□□ -0.6
CD44-232ENST00000531118 FMR1Q06787 632 aaKnown RBP eCLIP11.33□□□□□ -0.6
CD44-232ENST00000531118 DGKZQ13574 1117 aa11.33□□□□□ -0.6
CD44-232ENST00000531118 BMP2KQ9NSY1 1161 aaPredicted RBP11.33□□□□□ -0.6
CD44-232ENST00000531118 STK24Q9Y6E0 443 aa11.33□□□□□ -0.6
CD44-232ENST00000531118 TLL2Q9Y6L7 1015 aa11.33□□□□□ -0.6
CD44-232ENST00000531118 TTLL13PA6NNM8 815 aa11.32□□□□□ -0.6
CD44-232ENST00000531118 AKAP4Q5JQC9 854 aa11.32□□□□□ -0.6
CD44-232ENST00000531118 VSIG10Q8N0Z9 540 aa11.32□□□□□ -0.6
CD44-232ENST00000531118 C7orf43Q8WVR3 580 aa11.32□□□□□ -0.6
CD44-232ENST00000531118 DCBLD2Q96PD2 775 aa11.32□□□□□ -0.6
CD44-232ENST00000531118 FZD9O00144 591 aa11.31□□□□□ -0.6
CD44-232ENST00000531118 NPHP1O15259 732 aa11.31□□□□□ -0.6
CD44-232ENST00000531118 SOX10P56693 466 aa11.31□□□□□ -0.6
CD44-232ENST00000531118 GPC2Q8N158 579 aa11.31□□□□□ -0.6
CD44-232ENST00000531118 TRAF5O00463 557 aa11.3□□□□□ -0.6
CD44-232ENST00000531118 MAP2K2P36507 400 aa11.3□□□□□ -0.6
CD44-232ENST00000531118 IARSP41252 1262 aaKnown RBP11.3□□□□□ -0.6
CD44-232ENST00000531118 BRPF1P55201 1214 aaPredicted RBP11.3□□□□□ -0.6
CD44-232ENST00000531118 ASTLQ6HA08 431 aaPredicted RBP11.3□□□□□ -0.6
CD44-232ENST00000531118 OLFM4Q6UX06 510 aa11.3□□□□□ -0.6
CD44-232ENST00000531118 RNMTO43148 476 aaKnown RBP11.29□□□□□ -0.6
CD44-232ENST00000531118 CAMTA2O94983 1202 aa11.29□□□□□ -0.6
CD44-232ENST00000531118 LMOD1P29536 600 aaPredicted RBP11.29□□□□□ -0.6
CD44-232ENST00000531118 CST9Q5W186 159 aa11.29□□□□□ -0.6
CD44-232ENST00000531118 SULT6B1Q6IMI4 303 aa11.29□□□□□ -0.6
CD44-232ENST00000531118 LGR6Q9HBX8 967 aa11.29□□□□□ -0.6
CD44-232ENST00000531118 ZNF330Q9Y3S2 320 aaPredicted RBP11.29□□□□□ -0.6
CD44-232ENST00000531118 AKAP11Q9UKA4 1901 aa11.29□□□□□ -0.6
CD44-232ENST00000531118 ATMINO43313 823 aaPredicted RBP11.28□□□□□ -0.6
CD44-232ENST00000531118 SCNN1DP51172 638 aa11.28□□□□□ -0.6
CD44-232ENST00000531118 BBXQ8WY36 941 aaPredicted RBP11.28□□□□□ -0.6
CD44-232ENST00000531118 SETDB2Q96T68 719 aa11.28□□□□□ -0.6
CD44-232ENST00000531118 TBC1D2BQ9UPU7 963 aa11.28□□□□□ -0.6
CD44-232ENST00000531118 HEG1Q9ULI3 1381 aa11.28□□□□□ -0.6
CD44-232ENST00000531118 STARD3NLO95772 234 aa11.27□□□□□ -0.61
CD44-232ENST00000531118 NPR1P16066 1061 aa11.27□□□□□ -0.61
CD44-232ENST00000531118 GOLGA2Q08379 1002 aa11.27□□□□□ -0.61
CD44-232ENST00000531118 SAPCD2Q86UD0 394 aa11.27□□□□□ -0.61
CD44-232ENST00000531118 RTKN2Q8IZC4 609 aa11.27□□□□□ -0.61
CD44-232ENST00000531118 GJA3Q9Y6H8 435 aa11.27□□□□□ -0.61
CD44-232ENST00000531118 IL6STP40189 918 aaPredicted RBP11.26□□□□□ -0.61
CD44-232ENST00000531118 EPS15P42566 896 aa11.26□□□□□ -0.61
CD44-232ENST00000531118 CIAPIN1Q6FI81 312 aa11.26□□□□□ -0.61
CD44-232ENST00000531118 TTC5Q8N0Z6 440 aa11.26□□□□□ -0.61
CD44-232ENST00000531118 HHIPL1Q96JK4 782 aa11.26□□□□□ -0.61
CD44-232ENST00000531118 CELF2O95319 508 aaKnown RBP11.25□□□□□ -0.61
CD44-232ENST00000531118 EIF6P56537 245 aaKnown RBP11.25□□□□□ -0.61
CD44-232ENST00000531118 USP50Q70EL3 339 aaPredicted RBP11.25□□□□□ -0.61
CD44-232ENST00000531118 NBPF5PQ86XG9 351 aaPredicted RBP11.25□□□□□ -0.61
CD44-232ENST00000531118 SYNE4Q8N205 404 aa11.25□□□□□ -0.61
CD44-232ENST00000531118 JDP2Q8WYK2 163 aa11.25□□□□□ -0.61
CD44-232ENST00000531118 PSMD1Q99460 953 aa11.25□□□□□ -0.61
CD44-232ENST00000531118 LAMB4A4D0S4 1761 aa11.25□□□□□ -0.61
CD44-232ENST00000531118 KLRG2A4D1S0 409 aaPredicted RBP11.24□□□□□ -0.61
CD44-232ENST00000531118 ATN1P54259 1190 aaPredicted RBP11.24□□□□□ -0.61
CD44-232ENST00000531118 ZNF496Q96IT1 587 aaPredicted RBP11.24□□□□□ -0.61
CD44-232ENST00000531118 TRIM35Q9UPQ4 493 aa11.24□□□□□ -0.61
CD44-232ENST00000531118 IL13P35225 146 aa11.23□□□□□ -0.61
CD44-232ENST00000531118 DZIP3Q86Y13 1208 aaKnown RBP11.23□□□□□ -0.61
CD44-232ENST00000531118 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.23□□□□□ -0.61
CD44-232ENST00000531118 ABCC12Q96J65 1359 aa11.23□□□□□ -0.61
CD44-232ENST00000531118 RIC1Q4ADV7 1423 aa11.23□□□□□ -0.61
CD44-232ENST00000531118 MKRN3Q13064 507 aaKnown RBP11.22□□□□□ -0.61
CD44-232ENST00000531118 NOGQ13253 232 aa11.22□□□□□ -0.61
CD44-232ENST00000531118 ZIC5Q96T25 663 aa11.22□□□□□ -0.61
CD44-232ENST00000531118 GLIS2Q9BZE0 524 aaPredicted RBP11.22□□□□□ -0.61
CD44-232ENST00000531118 NUP98P52948 1817 aa11.21□□□□□ -0.61
CD44-232ENST00000531118 A1BGP04217 495 aa11.21□□□□□ -0.61
CD44-232ENST00000531118 MTHFSDQ2M296 383 aaKnown RBP11.21□□□□□ -0.61
CD44-232ENST00000531118 IER5LQ5T953 404 aa11.21□□□□□ -0.61
CD44-232ENST00000531118 NPM2Q86SE8 214 aaKnown RBP11.21□□□□□ -0.61
CD44-232ENST00000531118 ZNF408Q9H9D4 720 aa11.21□□□□□ -0.61
CD44-232ENST00000531118 ADARB2Q9NS39 739 aaKnown RBP11.21□□□□□ -0.61
CD44-232ENST00000531118 SAGE1Q9NXZ1 904 aa11.21□□□□□ -0.61
CD44-232ENST00000531118 ZNF790Q6PG37 636 aa11.2□□□□□ -0.62
CD44-232ENST00000531118 SLC51AQ86UW1 340 aa11.2□□□□□ -0.62
CD44-232ENST00000531118 LARGE2Q8N3Y3 721 aa11.2□□□□□ -0.62
CD44-232ENST00000531118 EFCAB3Q8N7B9 438 aa11.2□□□□□ -0.62
CD44-232ENST00000531118 TEX13AQ9BXU3 409 aaPredicted RBP11.2□□□□□ -0.62
CD44-232ENST00000531118 RYDENQ9NUL5 291 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms