RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 MAP3K19Q56UN5 1328 aa11.68□□□□□ -0.54
SSBP3-212ENST00000528930 MAP1SQ66K74 1059 aaPredicted RBP11.68□□□□□ -0.54
SSBP3-212ENST00000528930 PAXIP1Q6ZW49 1069 aaPredicted RBP11.68□□□□□ -0.54
SSBP3-212ENST00000528930 TTLL6Q8N841 843 aa11.68□□□□□ -0.54
SSBP3-212ENST00000528930 GGNBP2Q9H3C7 697 aa11.68□□□□□ -0.54
SSBP3-212ENST00000528930 BCORQ6W2J9 1755 aa11.68□□□□□ -0.54
SSBP3-212ENST00000528930 CNTNAP4Q9C0A0 1308 aa11.67□□□□□ -0.54
SSBP3-212ENST00000528930 POLRMTO00411 1230 aaKnown RBP11.67□□□□□ -0.54
SSBP3-212ENST00000528930 RFC4P35249 363 aa11.67□□□□□ -0.54
SSBP3-212ENST00000528930 ATP6V1AP38606 617 aa11.67□□□□□ -0.54
SSBP3-212ENST00000528930 GRM1Q13255 1194 aa11.67□□□□□ -0.54
SSBP3-212ENST00000528930 EAPPQ56P03 285 aaPredicted RBP11.67□□□□□ -0.54
SSBP3-212ENST00000528930 TLL2Q9Y6L7 1015 aa11.67□□□□□ -0.54
SSBP3-212ENST00000528930 SLX4Q8IY92 1834 aa11.66□□□□□ -0.54
SSBP3-212ENST00000528930 KIF20BQ96Q89 1820 aa11.66□□□□□ -0.54
SSBP3-212ENST00000528930 RC3H1Q5TC82 1133 aaKnown RBP11.66□□□□□ -0.54
SSBP3-212ENST00000528930 LTV1Q96GA3 475 aaPredicted RBP11.66□□□□□ -0.54
SSBP3-212ENST00000528930 POLR3GLQ9BT43 218 aa11.66□□□□□ -0.54
SSBP3-212ENST00000528930 RGL2O15211 777 aa11.65□□□□□ -0.54
SSBP3-212ENST00000528930 CYP27B1O15528 508 aa11.65□□□□□ -0.54
SSBP3-212ENST00000528930 RPS6KA4O75676 772 aa11.65□□□□□ -0.54
SSBP3-212ENST00000528930 PPP1R37O75864 691 aa11.65□□□□□ -0.54
SSBP3-212ENST00000528930 TMC2Q8TDI7 906 aa11.65□□□□□ -0.54
SSBP3-212ENST00000528930 TJP1Q07157 1748 aa11.65□□□□□ -0.54
SSBP3-212ENST00000528930 USP42Q9H9J4 1324 aaKnown RBP11.64□□□□□ -0.55
SSBP3-212ENST00000528930 HOXC9P31274 260 aa11.64□□□□□ -0.55
SSBP3-212ENST00000528930 EPHX2P34913 555 aa11.64□□□□□ -0.55
SSBP3-212ENST00000528930 CST9Q5W186 159 aa11.64□□□□□ -0.55
SSBP3-212ENST00000528930 PNMA8AQ86V59 439 aaPredicted RBP11.64□□□□□ -0.55
SSBP3-212ENST00000528930 HACL1Q9UJ83 578 aa11.64□□□□□ -0.55
SSBP3-212ENST00000528930 MKI67P46013 3256 aaKnown RBP11.64□□□□□ -0.55
SSBP3-212ENST00000528930 TM4SF1P30408 202 aa11.63□□□□□ -0.55
SSBP3-212ENST00000528930 PBX2P40425 430 aa11.63□□□□□ -0.55
SSBP3-212ENST00000528930 RRS1Q15050 365 aaKnown RBP11.63□□□□□ -0.55
SSBP3-212ENST00000528930 CIAPIN1Q6FI81 312 aa11.63□□□□□ -0.55
SSBP3-212ENST00000528930 HHIPL1Q96JK4 782 aa11.63□□□□□ -0.55
SSBP3-212ENST00000528930 PANK3Q9H999 370 aa11.63□□□□□ -0.55
SSBP3-212ENST00000528930 ASAP1Q9ULH1 1129 aa11.63□□□□□ -0.55
SSBP3-212ENST00000528930 HPS5Q9UPZ3 1129 aa11.63□□□□□ -0.55
SSBP3-212ENST00000528930 PAPPA2Q9BXP8 1791 aa11.62□□□□□ -0.55
SSBP3-212ENST00000528930 COL6A3P12111 3177 aa11.62□□□□□ -0.55
SSBP3-212ENST00000528930 FMR1Q06787 632 aaKnown RBP eCLIP11.62□□□□□ -0.55
SSBP3-212ENST00000528930 NKX1-1Q15270 411 aaPredicted RBP11.62□□□□□ -0.55
SSBP3-212ENST00000528930 A0A0C4DFX4 3053 aa11.62□□□□□ -0.55
SSBP3-212ENST00000528930 AMPHP49418 695 aa11.61□□□□□ -0.55
SSBP3-212ENST00000528930 RAPGEF4Q8WZA2 1011 aa11.61□□□□□ -0.55
SSBP3-212ENST00000528930 SLC4A9Q96Q91 983 aa11.61□□□□□ -0.55
SSBP3-212ENST00000528930 TAOK3Q9H2K8 898 aa11.61□□□□□ -0.55
SSBP3-212ENST00000528930 SAGE1Q9NXZ1 904 aa11.61□□□□□ -0.55
SSBP3-212ENST00000528930 SRP68Q9UHB9 627 aaKnown RBP11.61□□□□□ -0.55
SSBP3-212ENST00000528930 RTL1A6NKG5 1358 aa11.61□□□□□ -0.55
SSBP3-212ENST00000528930 KIF7Q2M1P5 1343 aa11.6□□□□□ -0.55
SSBP3-212ENST00000528930 ZNF541Q9H0D2 1346 aa11.6□□□□□ -0.55
SSBP3-212ENST00000528930 CARMIL3Q8ND23 1372 aa11.6□□□□□ -0.55
SSBP3-212ENST00000528930 NBPF6Q5VWK0 638 aa11.6□□□□□ -0.55
SSBP3-212ENST00000528930 CTU1Q7Z7A3 348 aaKnown RBP11.6□□□□□ -0.55
SSBP3-212ENST00000528930 SAPCD2Q86UD0 394 aa11.6□□□□□ -0.55
SSBP3-212ENST00000528930 NBPF4Q96M43 638 aa11.6□□□□□ -0.55
SSBP3-212ENST00000528930 TATP17735 454 aaPredicted RBP11.59□□□□□ -0.55
SSBP3-212ENST00000528930 HSP90AB2PQ58FF8 381 aa11.59□□□□□ -0.55
SSBP3-212ENST00000528930 ATG3Q9NT62 314 aa11.59□□□□□ -0.55
SSBP3-212ENST00000528930 EMILIN1Q9Y6C2 1016 aa11.59□□□□□ -0.55
SSBP3-212ENST00000528930 CEP290O15078 2479 aa11.59□□□□□ -0.55
SSBP3-212ENST00000528930 KIF24Q5T7B8 1368 aa11.58□□□□□ -0.56
SSBP3-212ENST00000528930 C2CD5Q86YS7 1000 aa11.58□□□□□ -0.56
SSBP3-212ENST00000528930 USHBP1Q8N6Y0 703 aa11.58□□□□□ -0.56
SSBP3-212ENST00000528930 TMOD3Q9NYL9 352 aa11.58□□□□□ -0.56
SSBP3-212ENST00000528930 RNF123Q5XPI4 1314 aa11.58□□□□□ -0.56
SSBP3-212ENST00000528930 ANKRD26Q9UPS8 1709 aa11.57□□□□□ -0.56
SSBP3-212ENST00000528930 FLT4P35916 1363 aa11.57□□□□□ -0.56
SSBP3-212ENST00000528930 C21orf2O43822 256 aa11.57□□□□□ -0.56
SSBP3-212ENST00000528930 PLA2G2EQ9NZK7 142 aa11.57□□□□□ -0.56
SSBP3-212ENST00000528930 NCAPD2Q15021 1401 aa11.57□□□□□ -0.56
SSBP3-212ENST00000528930 H0YIN7 160 aa11.56□□□□□ -0.56
SSBP3-212ENST00000528930 PER1O15534 1290 aaPredicted RBP11.56□□□□□ -0.56
SSBP3-212ENST00000528930 NOGQ13253 232 aa11.56□□□□□ -0.56
SSBP3-212ENST00000528930 ADGRD1Q6QNK2 874 aa11.56□□□□□ -0.56
SSBP3-212ENST00000528930 ZIC5Q96T25 663 aa11.56□□□□□ -0.56
SSBP3-212ENST00000528930 POLKQ9UBT6 870 aa11.56□□□□□ -0.56
SSBP3-212ENST00000528930 WASHC2AQ641Q2 1341 aa11.56□□□□□ -0.56
SSBP3-212ENST00000528930 TRAF5O00463 557 aa11.55□□□□□ -0.56
SSBP3-212ENST00000528930 ARHGAP33O14559 1287 aa11.55□□□□□ -0.56
SSBP3-212ENST00000528930 PKN2Q16513 984 aaKnown RBP11.55□□□□□ -0.56
SSBP3-212ENST00000528930 KIAA0100Q14667 2235 aaKnown RBP11.55□□□□□ -0.56
SSBP3-212ENST00000528930 LAMB4A4D0S4 1761 aa11.54□□□□□ -0.56
SSBP3-212ENST00000528930 PSEN2P49810 448 aa11.54□□□□□ -0.56
SSBP3-212ENST00000528930 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
SSBP3-212ENST00000528930 DMRTA1Q5VZB9 504 aa11.54□□□□□ -0.56
SSBP3-212ENST00000528930 PPM1GO15355 546 aaPredicted RBP11.53□□□□□ -0.56
SSBP3-212ENST00000528930 TNNT2P45379 298 aaPredicted RBP11.53□□□□□ -0.56
SSBP3-212ENST00000528930 NFIXQ14938 502 aa11.53□□□□□ -0.56
SSBP3-212ENST00000528930 AKAP4Q5JQC9 854 aa11.53□□□□□ -0.56
SSBP3-212ENST00000528930 KNSTRNQ9Y448 316 aa11.53□□□□□ -0.56
SSBP3-212ENST00000528930 HCSTQ9UBK5 93 aa11.52□□□□□ -0.57
SSBP3-212ENST00000528930 SERPINB2P05120 415 aa11.51□□□□□ -0.57
SSBP3-212ENST00000528930 CRKLP46109 303 aaKnown RBP11.51□□□□□ -0.57
SSBP3-212ENST00000528930 SOGA3Q5TF21 947 aa11.51□□□□□ -0.57
SSBP3-212ENST00000528930 MORC1Q86VD1 984 aa11.51□□□□□ -0.57
SSBP3-212ENST00000528930 GPC2Q8N158 579 aa11.51□□□□□ -0.57
SSBP3-212ENST00000528930 PDZRN3Q9UPQ7 1066 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms