RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 FAM177BA6PVY3 158 aa14.01□□□□□ -0.17
CPSF1-203ENST00000527916 SNRPA1P09661 255 aaKnown RBP14.01□□□□□ -0.17
CPSF1-203ENST00000527916 EPS15P42566 896 aa14.01□□□□□ -0.17
CPSF1-203ENST00000527916 PIP4K2AP48426 406 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-203ENST00000527916 CST9Q5W186 159 aa14.01□□□□□ -0.17
CPSF1-203ENST00000527916 LARGE2Q8N3Y3 721 aa14.01□□□□□ -0.17
CPSF1-203ENST00000527916 MCOLN1Q9GZU1 580 aa14.01□□□□□ -0.17
CPSF1-203ENST00000527916 TSKSQ9UJT2 592 aa14.01□□□□□ -0.17
CPSF1-203ENST00000527916 SIPA1L3O60292 1781 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-203ENST00000527916 TRAF5O00463 557 aa14□□□□□ -0.17
CPSF1-203ENST00000527916 SCNN1DP51172 638 aa14□□□□□ -0.17
CPSF1-203ENST00000527916 NYXQ9GZU5 481 aa14□□□□□ -0.17
CPSF1-203ENST00000527916 RSPH6AQ9H0K4 717 aa14□□□□□ -0.17
CPSF1-203ENST00000527916 CASP8AP2Q9UKL3 1982 aa14□□□□□ -0.17
CPSF1-203ENST00000527916 CEMIPQ8WUJ3 1361 aa13.99□□□□□ -0.17
CPSF1-203ENST00000527916 KCNQ3O43525 872 aa13.99□□□□□ -0.17
CPSF1-203ENST00000527916 AOC2O75106 756 aa13.99□□□□□ -0.17
CPSF1-203ENST00000527916 BRPF1P55201 1214 aaPredicted RBP13.99□□□□□ -0.17
CPSF1-203ENST00000527916 FMR1Q06787 632 aaKnown RBP eCLIP13.99□□□□□ -0.179e-7■■■□□ 16.1
CPSF1-203ENST00000527916 CRY2Q49AN0 593 aa13.99□□□□□ -0.17
CPSF1-203ENST00000527916 RPGRQ92834 1020 aaKnown RBP13.99□□□□□ -0.17
CPSF1-203ENST00000527916 PRKAR2BP31323 418 aa13.98□□□□□ -0.17
CPSF1-203ENST00000527916 SAPCD2Q86UD0 394 aa13.98□□□□□ -0.17
CPSF1-203ENST00000527916 NIM1KQ8IY84 436 aa13.98□□□□□ -0.17
CPSF1-203ENST00000527916 HHIPL1Q96JK4 782 aa13.98□□□□□ -0.17
CPSF1-203ENST00000527916 PHACTR3Q96KR7 559 aa13.98□□□□□ -0.17
CPSF1-203ENST00000527916 TMX4Q9H1E5 349 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-203ENST00000527916 ADARB2Q9NS39 739 aaKnown RBP13.98□□□□□ -0.17
CPSF1-203ENST00000527916 CELF2O95319 508 aaKnown RBP13.97□□□□□ -0.17
CPSF1-203ENST00000527916 U2AF1L5P0DN76 240 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-203ENST00000527916 U2AF1Q01081 240 aaKnown RBP eCLIP13.97□□□□□ -0.17
CPSF1-203ENST00000527916 DGKZQ13574 1117 aa13.97□□□□□ -0.17
CPSF1-203ENST00000527916 SNED1Q8TER0 1413 aa13.97□□□□□ -0.17
CPSF1-203ENST00000527916 LTBP1Q14766 1721 aa13.96□□□□□ -0.17
CPSF1-203ENST00000527916 PRAMEF22A3QJZ6 481 aa13.96□□□□□ -0.17
CPSF1-203ENST00000527916 HOXA10P31260 410 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-203ENST00000527916 RTF1Q92541 710 aaKnown RBP13.96□□□□□ -0.17
CPSF1-203ENST00000527916 GPRC5DQ9NZD1 345 aa13.96□□□□□ -0.17
CPSF1-203ENST00000527916 NBPF26B4DH59 902 aa13.95□□□□□ -0.18
CPSF1-203ENST00000527916 HTATSF1O43719 755 aaKnown RBP13.95□□□□□ -0.18
CPSF1-203ENST00000527916 HLFQ16534 295 aa13.95□□□□□ -0.18
CPSF1-203ENST00000527916 NBPF10Q6P3W6 841 aaKnown RBP13.95□□□□□ -0.18
CPSF1-203ENST00000527916 NBPF15Q8N660 670 aa13.95□□□□□ -0.18
CPSF1-203ENST00000527916 RBM17Q96I25 401 aaKnown RBP13.95□□□□□ -0.18
CPSF1-203ENST00000527916 VPS33BQ9H267 617 aa13.95□□□□□ -0.18
CPSF1-203ENST00000527916 PPIP5K2O43314 1243 aa13.94□□□□□ -0.18
CPSF1-203ENST00000527916 NOGQ13253 232 aa13.94□□□□□ -0.18
CPSF1-203ENST00000527916 NUTM1Q86Y26 1132 aa13.94□□□□□ -0.18
CPSF1-203ENST00000527916 CRAMP1Q96RY5 1269 aa13.94□□□□□ -0.18
CPSF1-203ENST00000527916 COL4A5P29400 1685 aa13.94□□□□□ -0.18
CPSF1-203ENST00000527916 ERVV-1B6SEH8 477 aa13.93□□□□□ -0.18
CPSF1-203ENST00000527916 PPEF1O14829 653 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-203ENST00000527916 CIAPIN1Q6FI81 312 aa13.93□□□□□ -0.18
CPSF1-203ENST00000527916 ZC3H15Q8WU90 426 aaKnown RBP13.93□□□□□ -0.18
CPSF1-203ENST00000527916 GLIS2Q9BZE0 524 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-203ENST00000527916 ZNF408Q9H9D4 720 aa13.93□□□□□ -0.18
CPSF1-203ENST00000527916 ABCC12Q96J65 1359 aa13.93□□□□□ -0.18
CPSF1-203ENST00000527916 TCERG1O14776 1098 aaKnown RBP13.92□□□□□ -0.18
CPSF1-203ENST00000527916 KIF6Q6ZMV9 814 aa13.92□□□□□ -0.18
CPSF1-203ENST00000527916 SUPT20HQ8NEM7 779 aa13.92□□□□□ -0.18
CPSF1-203ENST00000527916 ZNRF3Q9ULT6 936 aa13.92□□□□□ -0.18
CPSF1-203ENST00000527916 CDHR2Q9BYE9 1310 aa13.91□□□□□ -0.18
CPSF1-203ENST00000527916 RIC1Q4ADV7 1423 aa13.91□□□□□ -0.18
CPSF1-203ENST00000527916 GMPSP49915 693 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-203ENST00000527916 CXCL9Q07325 125 aa13.91□□□□□ -0.18
CPSF1-203ENST00000527916 RALBP1Q15311 655 aa13.91□□□□□ -0.18
CPSF1-203ENST00000527916 AOC3Q16853 763 aa13.91□□□□□ -0.18
CPSF1-203ENST00000527916 CDC37L1Q7L3B6 337 aa13.91□□□□□ -0.18
CPSF1-203ENST00000527916 PNNQ9H307 717 aaKnown RBP13.91□□□□□ -0.18
CPSF1-203ENST00000527916 PGAP2Q9UHJ9 254 aa13.91□□□□□ -0.18
CPSF1-203ENST00000527916 IBTKQ9P2D0 1353 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-203ENST00000527916 NEFMP07197 916 aa13.9□□□□□ -0.18
CPSF1-203ENST00000527916 TNIP1Q15025 636 aa13.9□□□□□ -0.18
CPSF1-203ENST00000527916 MCM10Q7L590 875 aa13.9□□□□□ -0.18
CPSF1-203ENST00000527916 NGEFQ8N5V2 710 aa13.9□□□□□ -0.18
CPSF1-203ENST00000527916 BCL2L13Q9BXK5 485 aa13.9□□□□□ -0.18
CPSF1-203ENST00000527916 MAP3K15Q6ZN16 1313 aa13.9□□□□□ -0.19
CPSF1-203ENST00000527916 HUNKP57058 714 aa13.89□□□□□ -0.19
CPSF1-203ENST00000527916 NLRP3Q96P20 1036 aa13.89□□□□□ -0.19
CPSF1-203ENST00000527916 PLEKHF1Q96S99 279 aa13.89□□□□□ -0.19
CPSF1-203ENST00000527916 ATP6V0A2Q9Y487 856 aa13.89□□□□□ -0.19
CPSF1-203ENST00000527916 DLG5Q8TDM6 1919 aa13.89□□□□□ -0.19
CPSF1-203ENST00000527916 NUP98P52948 1817 aa13.88□□□□□ -0.19
CPSF1-203ENST00000527916 H7C1D1 291 aa13.88□□□□□ -0.19
CPSF1-203ENST00000527916 GPTP24298 496 aa13.88□□□□□ -0.19
CPSF1-203ENST00000527916 TAF7Q15545 349 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-203ENST00000527916 PPP1R42Q7Z4L9 355 aa13.88□□□□□ -0.19
CPSF1-203ENST00000527916 SAGE1Q9NXZ1 904 aa13.88□□□□□ -0.19
CPSF1-203ENST00000527916 PRPF38BQ5VTL8 546 aaKnown RBP13.87□□□□□ -0.19
CPSF1-203ENST00000527916 DPP8Q6V1X1 898 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-203ENST00000527916 CCDC102AQ96A19 550 aa13.87□□□□□ -0.19
CPSF1-203ENST00000527916 RTFDC1Q9BY42 306 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-203ENST00000527916 SOX10P56693 466 aa13.86□□□□□ -0.19
CPSF1-203ENST00000527916 DDX10Q13206 875 aaKnown RBP13.86□□□□□ -0.19
CPSF1-203ENST00000527916 PARP10Q53GL7 1025 aa13.86□□□□□ -0.19
CPSF1-203ENST00000527916 SUSD4Q5VX71 490 aa13.86□□□□□ -0.19
CPSF1-203ENST00000527916 ZBTB3Q9H5J0 574 aa13.86□□□□□ -0.19
CPSF1-203ENST00000527916 CNOT7Q9UIV1 285 aaKnown RBP13.86□□□□□ -0.19
CPSF1-203ENST00000527916 RRP7AQ9Y3A4 280 aaKnown RBP13.86□□□□□ -0.19
CPSF1-203ENST00000527916 UBN2Q6ZU65 1347 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms