RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 TSKSQ9UJT2 592 aa8.71□□□□□ -1.02
CD44-221ENST00000526000 MAP3K15Q6ZN16 1313 aa8.71□□□□□ -1.02
CD44-221ENST00000526000 WDR33Q9C0J8 1336 aaKnown RBP8.71□□□□□ -1.02
CD44-221ENST00000526000 ABCC12Q96J65 1359 aa8.71□□□□□ -1.02
CD44-221ENST00000526000 NPC1L1Q9UHC9 1359 aa8.71□□□□□ -1.02
CD44-221ENST00000526000 HTATSF1O43719 755 aaKnown RBP8.7□□□□□ -1.02
CD44-221ENST00000526000 LMOD1P29536 600 aaPredicted RBP8.7□□□□□ -1.02
CD44-221ENST00000526000 AOC3Q16853 763 aa8.7□□□□□ -1.02
CD44-221ENST00000526000 CYP4F22Q6NT55 531 aa8.7□□□□□ -1.02
CD44-221ENST00000526000 GPC2Q8N158 579 aa8.7□□□□□ -1.02
CD44-221ENST00000526000 NYXQ9GZU5 481 aa8.7□□□□□ -1.02
CD44-221ENST00000526000 PRDM10Q9NQV6 1147 aa8.7□□□□□ -1.02
CD44-221ENST00000526000 DDX21Q9NR30 783 aaKnown RBP eCLIP8.7□□□□□ -1.02
CD44-221ENST00000526000 UBN2Q6ZU65 1347 aa8.7□□□□□ -1.02
CD44-221ENST00000526000 ERVV-1B6SEH8 477 aa8.69□□□□□ -1.02
CD44-221ENST00000526000 PPEF1O14829 653 aaPredicted RBP8.69□□□□□ -1.02
CD44-221ENST00000526000 PPIP5K2O43314 1243 aa8.69□□□□□ -1.02
CD44-221ENST00000526000 AOC2O75106 756 aa8.69□□□□□ -1.02
CD44-221ENST00000526000 HSPA8P11142 646 aaKnown RBP8.69□□□□□ -1.02
CD44-221ENST00000526000 HCLS1P14317 486 aaPredicted RBP8.69□□□□□ -1.02
CD44-221ENST00000526000 DLK2Q6UY11 383 aa8.69□□□□□ -1.02
CD44-221ENST00000526000 NIM1KQ8IY84 436 aa8.69□□□□□ -1.02
CD44-221ENST00000526000 PNISRQ8TF01 805 aaKnown RBP8.69□□□□□ -1.02
CD44-221ENST00000526000 COL11A2P13942 1736 aaPredicted RBP8.68□□□□□ -1.02
CD44-221ENST00000526000 RASSF10A6NK89 507 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 CCDC85CA6NKD9 419 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 RAD17O75943 681 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 SCNN1DP51172 638 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 NEUROD2Q15784 382 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 NFE2L2Q16236 605 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 PROSER3Q2NL68 480 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 CRY2Q49AN0 593 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 CST9Q5W186 159 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 ZNF34Q8IZ26 560 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 CAPNS2Q96L46 248 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 NLRP3Q96P20 1036 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 GPR101Q96P66 508 aaPredicted RBP8.68□□□□□ -1.02
CD44-221ENST00000526000 PSMD1Q99460 953 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 UTP14AQ9BVJ6 771 aaKnown RBP8.68□□□□□ -1.02
CD44-221ENST00000526000 TMX4Q9H1E5 349 aaPredicted RBP8.68□□□□□ -1.02
CD44-221ENST00000526000 ZNF408Q9H9D4 720 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 TSPYL4Q9UJ04 414 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 LAS1LQ9Y4W2 734 aaKnown RBP8.68□□□□□ -1.02
CD44-221ENST00000526000 TIAM2Q8IVF5 1701 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 UBR2Q8IWV8 1755 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 FER1L6Q2WGJ9 1857 aa8.68□□□□□ -1.02
CD44-221ENST00000526000 SHTN1A0MZ66 631 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 NTSR2O95665 410 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 HOXA10P31260 410 aaPredicted RBP8.67□□□□□ -1.02
CD44-221ENST00000526000 RIPK4P57078 832 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 MAP2K1Q02750 393 aaPredicted RBP8.67□□□□□ -1.02
CD44-221ENST00000526000 CXCL9Q07325 125 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 VIRMAQ69YN4 1812 aaKnown RBP8.67□□□□□ -1.02
CD44-221ENST00000526000 CC2D2BQ6DHV5 1058 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 GIGYF2Q6Y7W6 1299 aaKnown RBP8.67□□□□□ -1.02
CD44-221ENST00000526000 COPS6Q7L5N1 327 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 PPP1R42Q7Z4L9 355 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 ABHD8Q96I13 439 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 CFAP44Q96MT7 982 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 CRAMP1Q96RY5 1269 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 PLEKHF1Q96S99 279 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 BCL2L13Q9BXK5 485 aa8.67□□□□□ -1.02
CD44-221ENST00000526000 GLIS2Q9BZE0 524 aaPredicted RBP8.67□□□□□ -1.02
CD44-221ENST00000526000 DLEC1Q9Y238 1755 aa8.66□□□□□ -1.02
CD44-221ENST00000526000 CELF2O95319 508 aaKnown RBP8.66□□□□□ -1.02
CD44-221ENST00000526000 GMPSP49915 693 aaPredicted RBP8.66□□□□□ -1.02
CD44-221ENST00000526000 PDIA6Q15084 440 aa8.66□□□□□ -1.02
CD44-221ENST00000526000 KRT24Q2M2I5 525 aa8.66□□□□□ -1.02
CD44-221ENST00000526000 RTL5Q5HYW3 569 aaPredicted RBP8.66□□□□□ -1.02
CD44-221ENST00000526000 RBM26Q5T8P6 1007 aaKnown RBP8.66□□□□□ -1.02
CD44-221ENST00000526000 MPNDQ8N594 471 aa8.66□□□□□ -1.02
CD44-221ENST00000526000 XAGE3Q8WTP9 111 aa8.66□□□□□ -1.02
CD44-221ENST00000526000 BEGAINQ9BUH8 593 aa8.66□□□□□ -1.02
CD44-221ENST00000526000 CACNA1SQ13698 1873 aa8.66□□□□□ -1.02
CD44-221ENST00000526000 MAPK8IP3Q9UPT6 1336 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 RIMBP2O15034 1052 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 HIRAP54198 1017 aaPredicted RBP8.65□□□□□ -1.02
CD44-221ENST00000526000 FAM161AQ3B820 660 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 CIAPIN1Q6FI81 312 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 DPP8Q6V1X1 898 aaPredicted RBP8.65□□□□□ -1.02
CD44-221ENST00000526000 USP50Q70EL3 339 aaPredicted RBP8.65□□□□□ -1.02
CD44-221ENST00000526000 USP48Q86UV5 1035 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 CCDC146Q8IYE0 955 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 ZIC5Q96T25 663 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 TRMT112Q9UI30 125 aaKnown RBP8.65□□□□□ -1.02
CD44-221ENST00000526000 ZNRF3Q9ULT6 936 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 ZBTB12Q9Y330 459 aaPredicted RBP8.65□□□□□ -1.02
CD44-221ENST00000526000 ATP6V0A2Q9Y487 856 aa8.65□□□□□ -1.02
CD44-221ENST00000526000 COL4A5P29400 1685 aa8.65□□□□□ -1.03
CD44-221ENST00000526000 SCN7AQ01118 1682 aa8.65□□□□□ -1.03
CD44-221ENST00000526000 ABCC4O15439 1325 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 ATP5J2-PTCD1G3V325 749 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 RGL2O15211 777 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 ECE1P42892 770 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 PARP10Q53GL7 1025 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 SLC10A5Q5PT55 438 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 DDX46Q7L014 1031 aaKnown RBP8.64□□□□□ -1.03
CD44-221ENST00000526000 SP8Q8IXZ3 490 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 TRPM4Q8TD43 1214 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 KCNQ5Q9NR82 932 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms