RNA–Protein interactions for RNA: ENST00000525441.5

NR1H3-228, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 2

Gene NR1H3, Length 610 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-228ENST00000525441 CRY2Q49AN0 593 aa22.58■■□□□ 1.21
NR1H3-228ENST00000525441 TSPYL6Q8N831 410 aa22.58■■□□□ 1.21
NR1H3-228ENST00000525441 RPGRQ92834 1020 aaKnown RBP22.58■■□□□ 1.21
NR1H3-228ENST00000525441 TWISTNBQ3B726 338 aaPredicted RBP22.57■■□□□ 1.2
NR1H3-228ENST00000525441 STK31Q9BXU1 1019 aa22.57■■□□□ 1.2
NR1H3-228ENST00000525441 ANKRD36CQ5JPF3 1778 aa22.56■■□□□ 1.2
NR1H3-228ENST00000525441 NFKBIEO00221 500 aa22.56■■□□□ 1.2
NR1H3-228ENST00000525441 SLC10A5Q5PT55 438 aa22.56■■□□□ 1.2
NR1H3-228ENST00000525441 RIC3Q7Z5B4 369 aa22.56■■□□□ 1.2
NR1H3-228ENST00000525441 NLRP3Q96P20 1036 aa22.56■■□□□ 1.2
NR1H3-228ENST00000525441 TRMT112Q9UI30 125 aaKnown RBP22.56■■□□□ 1.2
NR1H3-228ENST00000525441 SLX4Q8IY92 1834 aa22.56■■□□□ 1.2
NR1H3-228ENST00000525441 FANCIQ9NVI1 1328 aa22.56■■□□□ 1.2
NR1H3-228ENST00000525441 ZC3H4Q9UPT8 1303 aaKnown RBP22.56■■□□□ 1.2
NR1H3-228ENST00000525441 ARFGEF2Q9Y6D5 1785 aa22.55■■□□□ 1.2
NR1H3-228ENST00000525441 DDX58O95786 925 aaKnown RBP22.55■■□□□ 1.2
NR1H3-228ENST00000525441 CCDC93Q567U6 631 aa22.55■■□□□ 1.2
NR1H3-228ENST00000525441 RBM17Q96I25 401 aaKnown RBP22.55■■□□□ 1.2
NR1H3-228ENST00000525441 TAOK3Q9H2K8 898 aa22.55■■□□□ 1.2
NR1H3-228ENST00000525441 PHAXQ9H814 394 aaKnown RBP22.55■■□□□ 1.2
NR1H3-228ENST00000525441 TNRC6CQ9HCJ0 1690 aaKnown RBP22.55■■□□□ 1.2
NR1H3-228ENST00000525441 SH3TC1Q8TE82 1336 aa22.55■■□□□ 1.2
NR1H3-228ENST00000525441 LTBP3Q9NS15 1303 aa22.55■■□□□ 1.2
NR1H3-228ENST00000525441 HOXA10P31260 410 aaPredicted RBP22.54■■□□□ 1.2
NR1H3-228ENST00000525441 ISCA1Q9BUE6 129 aa22.54■■□□□ 1.2
NR1H3-228ENST00000525441 C7orf43Q8WVR3 580 aa22.53■■□□□ 1.2
NR1H3-228ENST00000525441 MYH16Q9H6N6 1097 aa22.53■■□□□ 1.2
NR1H3-228ENST00000525441 SBF1O95248 1867 aa22.53■■□□□ 1.2
NR1H3-228ENST00000525441 ATP5J2-PTCD1G3V325 749 aa22.52■■□□□ 1.2
NR1H3-228ENST00000525441 CCER2I3L3R5 266 aa22.52■■□□□ 1.2
NR1H3-228ENST00000525441 TRIM28Q13263 835 aaKnown RBP22.52■■□□□ 1.2
NR1H3-228ENST00000525441 CRAMP1Q96RY5 1269 aa22.52■■□□□ 1.2
NR1H3-228ENST00000525441 KDM2BQ8NHM5 1336 aa22.52■■□□□ 1.2
NR1H3-228ENST00000525441 CACNA1SQ13698 1873 aa22.51■■□□□ 1.19
NR1H3-228ENST00000525441 C1QTNF8P60827 252 aa22.51■■□□□ 1.19
NR1H3-228ENST00000525441 RTKN2Q8IZC4 609 aa22.51■■□□□ 1.19
NR1H3-228ENST00000525441 FER1L6Q2WGJ9 1857 aa22.5■■□□□ 1.19
NR1H3-228ENST00000525441 PRELPP51888 382 aa22.5■■□□□ 1.19
NR1H3-228ENST00000525441 CC2D2BQ6DHV5 1058 aa22.5■■□□□ 1.19
NR1H3-228ENST00000525441 HCLS1P14317 486 aaPredicted RBP22.49■■□□□ 1.19
NR1H3-228ENST00000525441 C3orf67Q6ZVT6 689 aa22.49■■□□□ 1.19
NR1H3-228ENST00000525441 TCERG1O14776 1098 aaKnown RBP22.48■■□□□ 1.19
NR1H3-228ENST00000525441 FKBP4Q02790 459 aaKnown RBP eCLIP22.48■■□□□ 1.19
NR1H3-228ENST00000525441 EXOSC9Q06265 439 aaKnown RBP22.48■■□□□ 1.19
NR1H3-228ENST00000525441 GRIPAP1Q4V328 841 aa22.48■■□□□ 1.19
NR1H3-228ENST00000525441 MYD88Q99836 296 aa22.48■■□□□ 1.19
NR1H3-228ENST00000525441 SLC4A2P04920 1241 aa22.47■■□□□ 1.19
NR1H3-228ENST00000525441 HSP90B1P14625 803 aaKnown RBP22.47■■□□□ 1.19
NR1H3-228ENST00000525441 KSR2Q6VAB6 950 aa22.47■■□□□ 1.19
NR1H3-228ENST00000525441 SYNE4Q8N205 404 aa22.47■■□□□ 1.19
NR1H3-228ENST00000525441 METTL22Q9BUU2 404 aaPredicted RBP22.47■■□□□ 1.19
NR1H3-228ENST00000525441 TMX4Q9H1E5 349 aaPredicted RBP22.47■■□□□ 1.19
NR1H3-228ENST00000525441 PPEF1O14829 653 aaPredicted RBP22.46■■□□□ 1.19
NR1H3-228ENST00000525441 VAMP4O75379 141 aa22.46■■□□□ 1.19
NR1H3-228ENST00000525441 CCDC191Q8NCU4 936 aa22.46■■□□□ 1.19
NR1H3-228ENST00000525441 FAM89AQ96GI7 184 aa22.46■■□□□ 1.19
NR1H3-228ENST00000525441 SPINK5Q9NQ38 1064 aaPredicted RBP22.46■■□□□ 1.19
NR1H3-228ENST00000525441 MAP3K2Q9Y2U5 619 aa22.46■■□□□ 1.19
NR1H3-228ENST00000525441 KIF3CO14782 793 aa22.45■■□□□ 1.18
NR1H3-228ENST00000525441 OLFM4Q6UX06 510 aa22.45■■□□□ 1.18
NR1H3-228ENST00000525441 DDX46Q7L014 1031 aaKnown RBP22.45■■□□□ 1.18
NR1H3-228ENST00000525441 ZNF428Q96B54 188 aa22.45■■□□□ 1.18
NR1H3-228ENST00000525441 NMRK2Q9NPI5 230 aa22.45■■□□□ 1.18
NR1H3-228ENST00000525441 ZNF521Q96K83 1311 aa22.45■■□□□ 1.18
NR1H3-228ENST00000525441 PI4KAP2A4QPH2 592 aa22.44■■□□□ 1.18
NR1H3-228ENST00000525441 GLTPD2A6NH11 291 aa22.44■■□□□ 1.18
NR1H3-228ENST00000525441 NEXNQ0ZGT2 675 aa22.44■■□□□ 1.18
NR1H3-228ENST00000525441 CCDC88AQ3V6T2 1871 aa22.44■■□□□ 1.18
NR1H3-228ENST00000525441 DPY19L2Q6NUT2 758 aa22.44■■□□□ 1.18
NR1H3-228ENST00000525441 PI4KAP1Q8N8J0 262 aa22.44■■□□□ 1.18
NR1H3-228ENST00000525441 ZBTB38Q8NAP3 1195 aaPredicted RBP22.44■■□□□ 1.18
NR1H3-228ENST00000525441 CWC25Q9NXE8 425 aaPredicted RBP22.44■■□□□ 1.18
NR1H3-228ENST00000525441 ABCC4O15439 1325 aa22.43■■□□□ 1.18
NR1H3-228ENST00000525441 IRS4O14654 1257 aaPredicted RBP22.43■■□□□ 1.18
NR1H3-228ENST00000525441 BBOX1O75936 387 aa22.43■■□□□ 1.18
NR1H3-228ENST00000525441 PSMD1Q99460 953 aa22.43■■□□□ 1.18
NR1H3-228ENST00000525441 FLIIQ13045 1269 aa22.42■■□□□ 1.18
NR1H3-228ENST00000525441 RTL5Q5HYW3 569 aaPredicted RBP22.42■■□□□ 1.18
NR1H3-228ENST00000525441 ZNF277Q9NRM2 450 aaPredicted RBP22.42■■□□□ 1.18
NR1H3-228ENST00000525441 TIAM2Q8IVF5 1701 aa22.42■■□□□ 1.18
NR1H3-228ENST00000525441 PCCAP05165 728 aaPredicted RBP22.41■■□□□ 1.18
NR1H3-228ENST00000525441 SF3B3Q15393 1217 aaKnown RBP22.41■■□□□ 1.18
NR1H3-228ENST00000525441 G2E3Q7L622 706 aa22.41■■□□□ 1.18
NR1H3-228ENST00000525441 C16orf71Q8IYS4 520 aaPredicted RBP22.41■■□□□ 1.18
NR1H3-228ENST00000525441 ATP6V0A2Q9Y487 856 aa22.41■■□□□ 1.18
NR1H3-228ENST00000525441 DICER1Q9UPY3 1922 aaKnown RBP22.41■■□□□ 1.18
NR1H3-228ENST00000525441 FKBP5Q13451 457 aaPredicted RBP22.4■■□□□ 1.18
NR1H3-228ENST00000525441 GRAPQ13588 217 aa22.4■■□□□ 1.18
NR1H3-228ENST00000525441 TMC4Q7Z404 712 aa22.4■■□□□ 1.18
NR1H3-228ENST00000525441 GRAPLQ8TC17 118 aaPredicted RBP22.4■■□□□ 1.18
NR1H3-228ENST00000525441 E9PSI1 815 aa22.39■■□□□ 1.17
NR1H3-228ENST00000525441 TOMM70O94826 608 aa22.39■■□□□ 1.17
NR1H3-228ENST00000525441 IARSP41252 1262 aaKnown RBP22.39■■□□□ 1.17
NR1H3-228ENST00000525441 DIEXFQ68CQ4 756 aaKnown RBP22.39■■□□□ 1.17
NR1H3-228ENST00000525441 RRAGCQ9HB90 399 aa22.39■■□□□ 1.17
NR1H3-228ENST00000525441 LAMB2P55268 1798 aa22.39■■□□□ 1.17
NR1H3-228ENST00000525441 CACNA1FO60840 1977 aa22.39■■□□□ 1.17
NR1H3-228ENST00000525441 SNED1Q8TER0 1413 aa22.39■■□□□ 1.17
NR1H3-228ENST00000525441 SP8Q8IXZ3 490 aa22.38■■□□□ 1.17
NR1H3-228ENST00000525441 DDX60Q8IY21 1712 aaKnown RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms