RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 C10orf71Q711Q0 1435 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 ATP10DQ9P241 1426 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 YBX3P16989 372 aaKnown RBP eCLIP5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 KCNA3P22001 575 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 NEXNQ0ZGT2 675 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 HSP90AB3PQ58FF7 597 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 BEND3Q5T5X7 828 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 C20orf194Q5TEA3 1177 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 UBE3BQ7Z3V4 1068 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 PPP1R42Q7Z4L9 355 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 CWC25Q9NXE8 425 aaPredicted RBP5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 RCAN3Q9UKA8 241 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 BCS1LQ9Y276 419 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 BCORQ6W2J9 1755 aa5.85□□□□□ -1.47
CHMP4A-202ENST00000524955 PXDNLA1KZ92 1463 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 SH3TC1Q8TE82 1336 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 H0YIN7 160 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 IRS4O14654 1257 aaPredicted RBP5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 CT47B1P0C2W7 299 aaPredicted RBP5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 RLBP1P12271 317 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 TRIM27P14373 513 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 GCKRQ14397 625 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 GPR162Q16538 588 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 PARP10Q53GL7 1025 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 LINS1Q8NG48 757 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 PANK1Q8TE04 598 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 BRIP1Q9BX63 1249 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 CHMP4AQ9BY43 222 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 SRCIN1Q9C0H9 1055 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 NYXQ9GZU5 481 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 CD2APQ9Y5K6 639 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 LRP5O75197 1615 aa5.84□□□□□ -1.47
CHMP4A-202ENST00000524955 SRCAPQ6ZRS2 3230 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 PTPRCP08575 1304 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 C21orf2O43822 256 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 PCCAP05165 728 aaPredicted RBP5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 NBPF7P0C2Y1 421 aaPredicted RBP5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 SRGNP10124 158 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 PDE6BP35913 854 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 EPHA10Q5JZY3 1008 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 ATF7IPQ6VMQ6 1270 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 TMEM57Q8N5G2 664 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 ZBTB38Q8NAP3 1195 aaPredicted RBP5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 CCDC191Q8NCU4 936 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 RPGRQ92834 1020 aaKnown RBP5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 SUCLG2Q96I99 432 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 SEC31BQ9NQW1 1179 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 C9orf78Q9NZ63 289 aaPredicted RBP5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 CHMP3Q9Y3E7 222 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 ARFGEF2Q9Y6D5 1785 aa5.83□□□□□ -1.48
CHMP4A-202ENST00000524955 TNRC6CQ9HCJ0 1690 aaKnown RBP5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 KIF16BQ96L93 1317 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 H7C1W4 665 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 GRM8O00222 908 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 CASP7P55210 303 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 TGFB2P61812 414 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 IRX6P78412 446 aaPredicted RBP5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 RASSF7Q02833 373 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 TRIM28Q13263 835 aaKnown RBP5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 ZKSCAN2Q63HK3 967 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 ITPRIPQ8IWB1 547 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 DZIP1LQ8IYY4 767 aaKnown RBP5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 CELF1Q92879 486 aaKnown RBP5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 NLRP3Q96P20 1036 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 MEIS3Q99687 375 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 API5Q9BZZ5 524 aaKnown RBP5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 C1orf115Q9H7X2 142 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 PIM2Q9P1W9 311 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 COG6Q9Y2V7 657 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 COL4A1P02462 1669 aa5.82□□□□□ -1.48
CHMP4A-202ENST00000524955 ABCC4O15439 1325 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 N4BP2Q86UW6 1770 aaPredicted RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 WTIPA6NIX2 430 aaPredicted RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 RGL2O15211 777 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 IPO8O15397 1037 aaKnown RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 PDE8AO60658 829 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 NPR1P16066 1061 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 BRPF1P55201 1214 aaPredicted RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 CTSWP56202 376 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 FOXO4P98177 505 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 FAM161AQ3B820 660 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 CRY2Q49AN0 593 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 DALRD3Q5D0E6 543 aaKnown RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 SLC10A5Q5PT55 438 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 PRPF40BQ6NWY9 871 aaKnown RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 LMBR1LQ6UX01 489 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 ARHGAP27Q6ZUM4 889 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 FTSJ3Q8IY81 847 aaKnown RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 TTLL6Q8N841 843 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 KLHDC4Q8TBB5 520 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 MASTLQ96GX5 879 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 KAZALD1Q96I82 304 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 ZNF594Q96JF6 807 aaPredicted RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 GPR101Q96P66 508 aaPredicted RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 USP44Q9H0E7 712 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 GREM2Q9H772 168 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 SUPT16HQ9Y5B9 1047 aaKnown RBP5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 COL24A1Q17RW2 1714 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 NUP98P52948 1817 aa5.81□□□□□ -1.48
CHMP4A-202ENST00000524955 AFDNP55196 1824 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms