RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 KCNQ4P56696 695 aa10.22□□□□□ -0.77
SKP1-213ENST00000524288 LINC00114Q6XXX2 140 aa10.22□□□□□ -0.77
SKP1-213ENST00000524288 CHSY3Q70JA7 882 aa10.22□□□□□ -0.77
SKP1-213ENST00000524288 ALDH16A1Q8IZ83 802 aa10.22□□□□□ -0.77
SKP1-213ENST00000524288 SIN3BO75182 1162 aa10.21□□□□□ -0.77
SKP1-213ENST00000524288 IGFBP4P22692 258 aa10.21□□□□□ -0.77
SKP1-213ENST00000524288 PCBP4P57723 403 aaKnown RBP10.21□□□□□ -0.77
SKP1-213ENST00000524288 NEUROD1Q13562 356 aa10.21□□□□□ -0.77
SKP1-213ENST00000524288 ELOAQ14241 798 aaKnown RBP10.21□□□□□ -0.77
SKP1-213ENST00000524288 PLA2G4EQ3MJ16 856 aa10.21□□□□□ -0.77
SKP1-213ENST00000524288 HINFPQ9BQA5 517 aa10.21□□□□□ -0.77
SKP1-213ENST00000524288 ELOA3CA0A087WX78 387 aaPredicted RBP10.2□□□□□ -0.78
SKP1-213ENST00000524288 ELOA3DA6NLF2 546 aaPredicted RBP10.2□□□□□ -0.78
SKP1-213ENST00000524288 ELOA3BQ3SY89 546 aa10.2□□□□□ -0.78
SKP1-213ENST00000524288 NPM2Q86SE8 214 aaKnown RBP10.2□□□□□ -0.78
SKP1-213ENST00000524288 SYT9Q86SS6 491 aa10.2□□□□□ -0.78
SKP1-213ENST00000524288 ELOA3Q8NG57 546 aa10.2□□□□□ -0.78
SKP1-213ENST00000524288 SUSD3Q96L08 255 aa10.2□□□□□ -0.78
SKP1-213ENST00000524288 CEP63Q96MT8 703 aa10.2□□□□□ -0.78
SKP1-213ENST00000524288 BRD7Q9NPI1 651 aa10.2□□□□□ -0.78
SKP1-213ENST00000524288 NOP53Q9NZM5 478 aaKnown RBP10.2□□□□□ -0.78
SKP1-213ENST00000524288 TYRO3Q06418 890 aa10.19□□□□□ -0.78
SKP1-213ENST00000524288 HSH2DQ96JZ2 352 aa10.19□□□□□ -0.78
SKP1-213ENST00000524288 MDFIQ99750 246 aa10.19□□□□□ -0.78
SKP1-213ENST00000524288 ADARB2-AS1A8MUL3 147 aa10.18□□□□□ -0.78
SKP1-213ENST00000524288 MSTNO14793 375 aa10.18□□□□□ -0.78
SKP1-213ENST00000524288 ALAS2P22557 587 aa10.18□□□□□ -0.78
SKP1-213ENST00000524288 MFAP1P55081 439 aaKnown RBP10.18□□□□□ -0.78
SKP1-213ENST00000524288 SFSWAPQ12872 951 aaKnown RBP10.18□□□□□ -0.78
SKP1-213ENST00000524288 RTN1Q16799 776 aa10.18□□□□□ -0.78
SKP1-213ENST00000524288 IER5Q5VY09 327 aa10.18□□□□□ -0.78
SKP1-213ENST00000524288 CHMP7Q8WUX9 453 aaPredicted RBP10.18□□□□□ -0.78
SKP1-213ENST00000524288 TNFRSF25Q93038 417 aa10.18□□□□□ -0.78
SKP1-213ENST00000524288 PATL2C9JE40 543 aaKnown RBP10.17□□□□□ -0.78
SKP1-213ENST00000524288 COL8A1P27658 744 aa10.17□□□□□ -0.78
SKP1-213ENST00000524288 SPEM2Q0P670 501 aa10.17□□□□□ -0.78
SKP1-213ENST00000524288 ZNF280CQ8ND82 737 aa10.17□□□□□ -0.78
SKP1-213ENST00000524288 FAM200AQ8TCP9 573 aa10.17□□□□□ -0.78
SKP1-213ENST00000524288 EFCC1Q9HA90 598 aa10.17□□□□□ -0.78
SKP1-213ENST00000524288 SLAIN2Q9P270 581 aa10.17□□□□□ -0.78
SKP1-213ENST00000524288 KCNH4Q9UQ05 1017 aa10.17□□□□□ -0.78
SKP1-213ENST00000524288 FOXO3O43524 673 aa10.15□□□□□ -0.78
SKP1-213ENST00000524288 BTLAQ7Z6A9 289 aa10.15□□□□□ -0.78
SKP1-213ENST00000524288 SLC30A3Q99726 388 aa10.15□□□□□ -0.78
SKP1-213ENST00000524288 LGR5O75473 907 aa10.14□□□□□ -0.79
SKP1-213ENST00000524288 ITGB2P05107 769 aa10.14□□□□□ -0.79
SKP1-213ENST00000524288 GRIN2CQ14957 1233 aa10.14□□□□□ -0.79
SKP1-213ENST00000524288 NGLY1Q96IV0 654 aa10.14□□□□□ -0.79
SKP1-213ENST00000524288 SPOCK3Q9BQ16 436 aa10.14□□□□□ -0.79
SKP1-213ENST00000524288 MTMR7Q9Y216 660 aa10.14□□□□□ -0.79
SKP1-213ENST00000524288 KRBA1A5PL33 1030 aa10.13□□□□□ -0.79
SKP1-213ENST00000524288 TGFBR3LH3BV60 316 aa10.13□□□□□ -0.79
SKP1-213ENST00000524288 WEE1P30291 646 aa10.13□□□□□ -0.79
SKP1-213ENST00000524288 FAM69CQ0P6D2 419 aa10.13□□□□□ -0.79
SKP1-213ENST00000524288 PHLDB3Q6NSJ2 640 aa10.13□□□□□ -0.79
SKP1-213ENST00000524288 SUV39H2Q9H5I1 410 aa10.13□□□□□ -0.79
SKP1-213ENST00000524288 PROCP04070 461 aa10.12□□□□□ -0.79
SKP1-213ENST00000524288 SCNN1AP37088 669 aa10.12□□□□□ -0.79
SKP1-213ENST00000524288 RANGAP1P46060 587 aaPredicted RBP10.12□□□□□ -0.79
SKP1-213ENST00000524288 B4GALNT3Q6L9W6 998 aa10.11□□□□□ -0.79
SKP1-213ENST00000524288 FOXD4L4Q8WXT5 416 aaPredicted RBP10.11□□□□□ -0.79
SKP1-213ENST00000524288 PRDM6Q9NQX0 595 aa10.11□□□□□ -0.79
SKP1-213ENST00000524288 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.11□□□□□ -0.798e-6■■■■□ 26.6
SKP1-213ENST00000524288 SPDYE3A6NKU9 549 aa10.1□□□□□ -0.79
SKP1-213ENST00000524288 EPB42P16452 691 aa10.1□□□□□ -0.79
SKP1-213ENST00000524288 SUZ12Q15022 739 aaKnown RBP10.1□□□□□ -0.79
SKP1-213ENST00000524288 RGS22Q8NE09 1264 aa10.1□□□□□ -0.79
SKP1-213ENST00000524288 PRMT3O60678 531 aa10.09□□□□□ -0.79
SKP1-213ENST00000524288 ATP2B4P23634 1241 aa10.09□□□□□ -0.79
SKP1-213ENST00000524288 SSFA2P28290 1259 aa10.09□□□□□ -0.79
SKP1-213ENST00000524288 ADH7P40394 386 aa10.09□□□□□ -0.79
SKP1-213ENST00000524288 SWI5Q1ZZU3 235 aa10.09□□□□□ -0.79
SKP1-213ENST00000524288 CLP1Q92989 425 aaKnown RBP10.09□□□□□ -0.79
SKP1-213ENST00000524288 VTI1AQ96AJ9 217 aa10.09□□□□□ -0.79
SKP1-213ENST00000524288 MYO19Q96H55 970 aa10.09□□□□□ -0.79
SKP1-213ENST00000524288 TRIM11Q96F44 468 aa10.08□□□□□ -0.8
SKP1-213ENST00000524288 C11orf16Q9NQ32 467 aa10.08□□□□□ -0.8
SKP1-213ENST00000524288 DMGDHQ9UI17 866 aaKnown RBP10.08□□□□□ -0.8
SKP1-213ENST00000524288 SND1Q7KZF4 910 aaKnown RBP eCLIP10.07□□□□□ -0.8
SKP1-213ENST00000524288 BHMTQ93088 406 aa10.07□□□□□ -0.8
SKP1-213ENST00000524288 PRIMPOLQ96LW4 560 aa10.07□□□□□ -0.8
SKP1-213ENST00000524288 BCS1LQ9Y276 419 aa10.07□□□□□ -0.8
SKP1-213ENST00000524288 M0R082 166 aa10.06□□□□□ -0.8
SKP1-213ENST00000524288 SPATA31C1P0DKV0 1188 aa10.06□□□□□ -0.8
SKP1-213ENST00000524288 RAB44Q7Z6P3 723 aaPredicted RBP10.06□□□□□ -0.8
SKP1-213ENST00000524288 TXNDC2Q86VQ3 553 aa10.06□□□□□ -0.8
SKP1-213ENST00000524288 ZNF417Q8TAU3 575 aa10.06□□□□□ -0.8
SKP1-213ENST00000524288 ZNF587Q96SQ5 575 aaPredicted RBP10.06□□□□□ -0.8
SKP1-213ENST00000524288 PLVAPQ9BX97 442 aa10.06□□□□□ -0.8
SKP1-213ENST00000524288 QTRT2Q9H974 415 aaKnown RBP10.06□□□□□ -0.8
SKP1-213ENST00000524288 SERPINB4P48594 390 aa10.05□□□□□ -0.8
SKP1-213ENST00000524288 CCINQ13939 588 aa10.05□□□□□ -0.8
SKP1-213ENST00000524288 CCDC27Q2M243 656 aa10.05□□□□□ -0.8
SKP1-213ENST00000524288 CCER1Q8TC90 406 aaPredicted RBP10.05□□□□□ -0.8
SKP1-213ENST00000524288 GSX2Q9BZM3 304 aa10.05□□□□□ -0.8
SKP1-213ENST00000524288 GNEQ9Y223 722 aaKnown RBP10.05□□□□□ -0.8
SKP1-213ENST00000524288 STARD13Q9Y3M8 1113 aa10.05□□□□□ -0.8
SKP1-213ENST00000524288 DGKZQ13574 1117 aa10.04□□□□□ -0.8
SKP1-213ENST00000524288 C11orf91Q3C1V1 193 aa10.04□□□□□ -0.8
SKP1-213ENST00000524288 MICALL1Q8N3F8 863 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms