RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 TRMT112Q9UI30 125 aaKnown RBP20.97■□□□□ 0.95
LSM1-205ENST00000523511 HSP90B1P14625 803 aaKnown RBP20.96■□□□□ 0.95
LSM1-205ENST00000523511 C1QTNF8P60827 252 aa20.96■□□□□ 0.95
LSM1-205ENST00000523511 CRY2Q49AN0 593 aa20.96■□□□□ 0.95
LSM1-205ENST00000523511 CCDC93Q567U6 631 aa20.96■□□□□ 0.95
LSM1-205ENST00000523511 CC2D2BQ6DHV5 1058 aa20.96■□□□□ 0.95
LSM1-205ENST00000523511 NLRP10Q86W26 655 aa20.96■□□□□ 0.95
LSM1-205ENST00000523511 TSR2Q969E8 191 aaKnown RBP20.96■□□□□ 0.95
LSM1-205ENST00000523511 TAOK3Q9H2K8 898 aa20.96■□□□□ 0.95
LSM1-205ENST00000523511 MYH16Q9H6N6 1097 aa20.96■□□□□ 0.95
LSM1-205ENST00000523511 TWISTNBQ3B726 338 aaPredicted RBP20.95■□□□□ 0.94
LSM1-205ENST00000523511 DPY19L2Q6NUT2 758 aa20.95■□□□□ 0.94
LSM1-205ENST00000523511 SH3TC1Q8TE82 1336 aa20.95■□□□□ 0.94
LSM1-205ENST00000523511 SENP3-EIF4A1A0A087X0R7 540 aa20.94■□□□□ 0.94
LSM1-205ENST00000523511 HOXA10P31260 410 aaPredicted RBP20.94■□□□□ 0.94
LSM1-205ENST00000523511 RASSF7Q02833 373 aa20.94■□□□□ 0.94
LSM1-205ENST00000523511 CRAMP1Q96RY5 1269 aa20.94■□□□□ 0.94
LSM1-205ENST00000523511 LTBP3Q9NS15 1303 aa20.94■□□□□ 0.94
LSM1-205ENST00000523511 TRIM28Q13263 835 aaKnown RBP20.93■□□□□ 0.94
LSM1-205ENST00000523511 RIC1Q4ADV7 1423 aa20.93■□□□□ 0.94
LSM1-205ENST00000523511 NFKBIEO00221 500 aa20.92■□□□□ 0.94
LSM1-205ENST00000523511 C16orf71Q8IYS4 520 aaPredicted RBP20.92■□□□□ 0.94
LSM1-205ENST00000523511 ARFGEF1Q9Y6D6 1849 aa20.92■□□□□ 0.94
LSM1-205ENST00000523511 BRCA1P38398 1863 aaKnown RBP20.92■□□□□ 0.94
LSM1-205ENST00000523511 C7orf43Q8WVR3 580 aa20.91■□□□□ 0.94
LSM1-205ENST00000523511 ISCA1Q9BUE6 129 aa20.91■□□□□ 0.94
LSM1-205ENST00000523511 PHAXQ9H814 394 aaKnown RBP20.91■□□□□ 0.94
LSM1-205ENST00000523511 TSPYL6Q8N831 410 aa20.9■□□□□ 0.94
LSM1-205ENST00000523511 ABCC12Q96J65 1359 aa20.89■□□□□ 0.93
LSM1-205ENST00000523511 ATP5J2-PTCD1G3V325 749 aa20.89■□□□□ 0.93
LSM1-205ENST00000523511 CCER2I3L3R5 266 aa20.89■□□□□ 0.93
LSM1-205ENST00000523511 BBOX1O75936 387 aa20.89■□□□□ 0.93
LSM1-205ENST00000523511 SLC4A2P04920 1241 aa20.89■□□□□ 0.93
LSM1-205ENST00000523511 FKBP4Q02790 459 aaKnown RBP eCLIP20.89■□□□□ 0.93
LSM1-205ENST00000523511 NEXNQ0ZGT2 675 aa20.89■□□□□ 0.93
LSM1-205ENST00000523511 DDX46Q7L014 1031 aaKnown RBP20.89■□□□□ 0.93
LSM1-205ENST00000523511 FANCIQ9NVI1 1328 aa20.88■□□□□ 0.93
LSM1-205ENST00000523511 GLTPD2A6NH11 291 aa20.88■□□□□ 0.93
LSM1-205ENST00000523511 CCDC191Q8NCU4 936 aa20.88■□□□□ 0.93
LSM1-205ENST00000523511 HCLS1P14317 486 aaPredicted RBP20.87■□□□□ 0.93
LSM1-205ENST00000523511 KSR2Q6VAB6 950 aa20.87■□□□□ 0.93
LSM1-205ENST00000523511 MYD88Q99836 296 aa20.87■□□□□ 0.93
LSM1-205ENST00000523511 DLEC1Q9Y238 1755 aa20.87■□□□□ 0.93
LSM1-205ENST00000523511 ANKRD31Q8N7Z5 1873 aa20.86■□□□□ 0.93
LSM1-205ENST00000523511 NUP98P52948 1817 aa20.86■□□□□ 0.93
LSM1-205ENST00000523511 PPEF1O14829 653 aaPredicted RBP20.86■□□□□ 0.93
LSM1-205ENST00000523511 TOMM70O94826 608 aa20.86■□□□□ 0.93
LSM1-205ENST00000523511 TMC4Q7Z404 712 aa20.86■□□□□ 0.93
LSM1-205ENST00000523511 ZBTB38Q8NAP3 1195 aaPredicted RBP20.86■□□□□ 0.93
LSM1-205ENST00000523511 FAM89AQ96GI7 184 aa20.86■□□□□ 0.93
LSM1-205ENST00000523511 METTL22Q9BUU2 404 aaPredicted RBP20.86■□□□□ 0.93
LSM1-205ENST00000523511 EXOSC9Q06265 439 aaKnown RBP20.85■□□□□ 0.93
LSM1-205ENST00000523511 SYNE4Q8N205 404 aa20.85■□□□□ 0.93
LSM1-205ENST00000523511 PSMD1Q99460 953 aa20.85■□□□□ 0.93
LSM1-205ENST00000523511 CWC25Q9NXE8 425 aaPredicted RBP20.85■□□□□ 0.93
LSM1-205ENST00000523511 PI4KAP2A4QPH2 592 aa20.84■□□□□ 0.93
LSM1-205ENST00000523511 KIF3CO14782 793 aa20.84■□□□□ 0.93
LSM1-205ENST00000523511 VAMP4O75379 141 aa20.84■□□□□ 0.93
LSM1-205ENST00000523511 VEGFAP15692 232 aaPredicted RBP20.84■□□□□ 0.93
LSM1-205ENST00000523511 PI4KAP1Q8N8J0 262 aa20.84■□□□□ 0.93
LSM1-205ENST00000523511 JDP2Q8WYK2 163 aa20.84■□□□□ 0.93
LSM1-205ENST00000523511 RRAGCQ9HB90 399 aa20.84■□□□□ 0.93
LSM1-205ENST00000523511 MAP3K2Q9Y2U5 619 aa20.84■□□□□ 0.93
LSM1-205ENST00000523511 IRS4O14654 1257 aaPredicted RBP20.83■□□□□ 0.93
LSM1-205ENST00000523511 SUPT20HQ8NEM7 779 aa20.83■□□□□ 0.93
LSM1-205ENST00000523511 VPS33BQ9H267 617 aa20.83■□□□□ 0.93
LSM1-205ENST00000523511 NMRK2Q9NPI5 230 aa20.83■□□□□ 0.93
LSM1-205ENST00000523511 ATP6V0A2Q9Y487 856 aa20.83■□□□□ 0.93
LSM1-205ENST00000523511 TCERG1O14776 1098 aaKnown RBP20.82■□□□□ 0.92
LSM1-205ENST00000523511 SF3B3Q15393 1217 aaKnown RBP20.82■□□□□ 0.92
LSM1-205ENST00000523511 SP8Q8IXZ3 490 aa20.82■□□□□ 0.92
LSM1-205ENST00000523511 PCCAP05165 728 aaPredicted RBP20.81■□□□□ 0.92
LSM1-205ENST00000523511 IARSP41252 1262 aaKnown RBP20.81■□□□□ 0.92
LSM1-205ENST00000523511 PRELPP51888 382 aa20.81■□□□□ 0.92
LSM1-205ENST00000523511 FKBP5Q13451 457 aaPredicted RBP20.81■□□□□ 0.92
LSM1-205ENST00000523511 GRAPQ13588 217 aa20.81■□□□□ 0.92
LSM1-205ENST00000523511 C3orf67Q6ZVT6 689 aa20.81■□□□□ 0.92
LSM1-205ENST00000523511 GRAPLQ8TC17 118 aaPredicted RBP20.81■□□□□ 0.92
LSM1-205ENST00000523511 ZNF277Q9NRM2 450 aaPredicted RBP20.81■□□□□ 0.92
LSM1-205ENST00000523511 ABCC4O15439 1325 aa20.8■□□□□ 0.92
LSM1-205ENST00000523511 E9PSI1 815 aa20.8■□□□□ 0.92
LSM1-205ENST00000523511 FLIIQ13045 1269 aa20.8■□□□□ 0.92
LSM1-205ENST00000523511 RTL5Q5HYW3 569 aaPredicted RBP20.8■□□□□ 0.92
LSM1-205ENST00000523511 COL11A2P13942 1736 aaPredicted RBP20.8■□□□□ 0.92
LSM1-205ENST00000523511 OLFM4Q6UX06 510 aa20.79■□□□□ 0.92
LSM1-205ENST00000523511 RBM46Q8TBY0 533 aaKnown RBP20.79■□□□□ 0.92
LSM1-205ENST00000523511 PDE8AO60658 829 aa20.78■□□□□ 0.92
LSM1-205ENST00000523511 CCDC152Q4G0S7 254 aa20.78■□□□□ 0.92
LSM1-205ENST00000523511 DPP8Q6V1X1 898 aaPredicted RBP20.78■□□□□ 0.92
LSM1-205ENST00000523511 MPNDQ8N594 471 aa20.78■□□□□ 0.92
LSM1-205ENST00000523511 SLX4Q8IY92 1834 aa20.78■□□□□ 0.92
LSM1-205ENST00000523511 IQCA1LA6NCM1 817 aa20.77■□□□□ 0.92
LSM1-205ENST00000523511 EIF6P56537 245 aaKnown RBP20.77■□□□□ 0.92
LSM1-205ENST00000523511 FSTL1Q12841 308 aa20.77■□□□□ 0.92
LSM1-205ENST00000523511 LARGE2Q8N3Y3 721 aa20.77■□□□□ 0.92
LSM1-205ENST00000523511 ZNF428Q96B54 188 aa20.77■□□□□ 0.92
LSM1-205ENST00000523511 DIEXFQ68CQ4 756 aaKnown RBP20.76■□□□□ 0.91
LSM1-205ENST00000523511 DNAAF4Q8WXU2 420 aa20.76■□□□□ 0.91
LSM1-205ENST00000523511 SPINK5Q9NQ38 1064 aaPredicted RBP20.76■□□□□ 0.91
LSM1-205ENST00000523511 ZNF521Q96K83 1311 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms