RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 TAOK3Q9H2K8 898 aa38.51■■■■□ 3.76
SYNPO-203ENST00000518872 HYPKQ9NX55 129 aa38.51■■■■□ 3.76
SYNPO-203ENST00000518872 ZNF219Q9P2Y4 722 aaPredicted RBP38.51■■■■□ 3.76
SYNPO-203ENST00000518872 TCIRG1Q13488 830 aa38.5■■■■□ 3.75
SYNPO-203ENST00000518872 PLBD2Q8NHP8 589 aa38.49■■■■□ 3.75
SYNPO-203ENST00000518872 UTP14AQ9BVJ6 771 aaKnown RBP38.49■■■■□ 3.75
SYNPO-203ENST00000518872 HOXA10P31260 410 aaPredicted RBP38.48■■■■□ 3.75
SYNPO-203ENST00000518872 CCDC93Q567U6 631 aa38.48■■■■□ 3.75
SYNPO-203ENST00000518872 SLC10A5Q5PT55 438 aa38.48■■■■□ 3.75
SYNPO-203ENST00000518872 WWC1Q8IX03 1113 aa38.48■■■■□ 3.75
SYNPO-203ENST00000518872 NMRK2Q9NPI5 230 aa38.48■■■■□ 3.75
SYNPO-203ENST00000518872 CHMP4AQ9BY43 222 aa38.47■■■■□ 3.75
SYNPO-203ENST00000518872 NLRP10Q86W26 655 aa38.46■■■■□ 3.75
SYNPO-203ENST00000518872 IL16Q14005 1332 aa38.45■■■■□ 3.75
SYNPO-203ENST00000518872 ANKRD13DQ6ZTN6 518 aa38.45■■■■□ 3.75
SYNPO-203ENST00000518872 C8orf58Q8NAV2 365 aa38.43■■■■□ 3.74
SYNPO-203ENST00000518872 SENP3-EIF4A1A0A087X0R7 540 aa38.42■■■■□ 3.74
SYNPO-203ENST00000518872 GLTPD2A6NH11 291 aa38.42■■■■□ 3.74
SYNPO-203ENST00000518872 TOMM70O94826 608 aa38.42■■■■□ 3.74
SYNPO-203ENST00000518872 SNED1Q8TER0 1413 aa38.42■■■■□ 3.74
SYNPO-203ENST00000518872 RPGRQ92834 1020 aaKnown RBP38.42■■■■□ 3.74
SYNPO-203ENST00000518872 CRAMP1Q96RY5 1269 aa38.42■■■■□ 3.74
SYNPO-203ENST00000518872 NLRP3Q96P20 1036 aa38.41■■■■□ 3.74
SYNPO-203ENST00000518872 LAMB2P55268 1798 aa38.41■■■■□ 3.74
SYNPO-203ENST00000518872 RTKN2Q8IZC4 609 aa38.4■■■■□ 3.74
SYNPO-203ENST00000518872 ELL2O00472 640 aaPredicted RBP38.39■■■■□ 3.74
SYNPO-203ENST00000518872 CC2D2BQ6DHV5 1058 aa38.39■■■■□ 3.74
SYNPO-203ENST00000518872 ISCA1Q9BUE6 129 aa38.39■■■■□ 3.74
SYNPO-203ENST00000518872 FKBP4Q02790 459 aaKnown RBP eCLIP38.38■■■■□ 3.73
SYNPO-203ENST00000518872 RBM17Q96I25 401 aaKnown RBP38.38■■■■□ 3.73
SYNPO-203ENST00000518872 C3orf67Q6ZVT6 689 aa38.37■■■■□ 3.73
SYNPO-203ENST00000518872 SH3TC1Q8TE82 1336 aa38.37■■■■□ 3.73
SYNPO-203ENST00000518872 TRIM28Q13263 835 aaKnown RBP38.36■■■■□ 3.73
SYNPO-203ENST00000518872 CCDC30Q5VVM6 783 aa38.36■■■■□ 3.73
SYNPO-203ENST00000518872 WDR90Q96KV7 1748 aa38.35■■■■□ 3.73
SYNPO-203ENST00000518872 TSR2Q969E8 191 aaKnown RBP38.35■■■■□ 3.73
SYNPO-203ENST00000518872 TRMT112Q9UI30 125 aaKnown RBP38.35■■■■□ 3.73
SYNPO-203ENST00000518872 GRIPAP1Q4V328 841 aa38.34■■■■□ 3.73
SYNPO-203ENST00000518872 TSPYL6Q8N831 410 aa38.34■■■■□ 3.73
SYNPO-203ENST00000518872 RRAGCQ9HB90 399 aa38.34■■■■□ 3.73
SYNPO-203ENST00000518872 DPY19L2Q6NUT2 758 aa38.33■■■■□ 3.73
SYNPO-203ENST00000518872 OLFM4Q6UX06 510 aa38.33■■■■□ 3.73
SYNPO-203ENST00000518872 RBM46Q8TBY0 533 aaKnown RBP38.33■■■■□ 3.73
SYNPO-203ENST00000518872 PSMD1Q99460 953 aa38.33■■■■□ 3.73
SYNPO-203ENST00000518872 DDX60Q8IY21 1712 aaKnown RBP38.32■■■■□ 3.73
SYNPO-203ENST00000518872 GOLGA2Q08379 1002 aa38.32■■■■□ 3.72
SYNPO-203ENST00000518872 WDR63Q8IWG1 891 aa38.32■■■■□ 3.72
SYNPO-203ENST00000518872 PHAXQ9H814 394 aaKnown RBP38.32■■■■□ 3.72
SYNPO-203ENST00000518872 HSPA6P17066 643 aa38.31■■■■□ 3.72
SYNPO-203ENST00000518872 CACNA1FO60840 1977 aa38.3■■■■□ 3.72
SYNPO-203ENST00000518872 C16orf71Q8IYS4 520 aaPredicted RBP38.29■■■■□ 3.72
SYNPO-203ENST00000518872 VEGFAP15692 232 aaPredicted RBP38.28■■■■□ 3.72
SYNPO-203ENST00000518872 RIC3Q7Z5B4 369 aa38.28■■■■□ 3.72
SYNPO-203ENST00000518872 SYNE4Q8N205 404 aa38.28■■■■□ 3.72
SYNPO-203ENST00000518872 PPEF1O14829 653 aaPredicted RBP38.27■■■■□ 3.72
SYNPO-203ENST00000518872 HCLS1P14317 486 aaPredicted RBP38.27■■■■□ 3.72
SYNPO-203ENST00000518872 ATP5J2-PTCD1G3V325 749 aa38.26■■■■□ 3.72
SYNPO-203ENST00000518872 ZNF277Q9NRM2 450 aaPredicted RBP38.26■■■■□ 3.72
SYNPO-203ENST00000518872 ABCC4O15439 1325 aa38.25■■■■□ 3.71
SYNPO-203ENST00000518872 TWISTNBQ3B726 338 aaPredicted RBP38.25■■■■□ 3.71
SYNPO-203ENST00000518872 FANCIQ9NVI1 1328 aa38.24■■■■□ 3.71
SYNPO-203ENST00000518872 DDX58O95786 925 aaKnown RBP38.24■■■■□ 3.71
SYNPO-203ENST00000518872 FAM9BQ8IZU0 186 aa38.24■■■■□ 3.71
SYNPO-203ENST00000518872 IARSP41252 1262 aaKnown RBP38.23■■■■□ 3.71
SYNPO-203ENST00000518872 FSTL1Q12841 308 aa38.23■■■■□ 3.71
SYNPO-203ENST00000518872 CEP350Q5VT06 3117 aa38.22■■■■□ 3.71
SYNPO-203ENST00000518872 POTECB2RU33 542 aa38.22■■■■□ 3.71
SYNPO-203ENST00000518872 BBOX1O75936 387 aa38.22■■■■□ 3.71
SYNPO-203ENST00000518872 STK31Q9BXU1 1019 aa38.22■■■■□ 3.71
SYNPO-203ENST00000518872 ATP6V0A2Q9Y487 856 aa38.22■■■■□ 3.71
SYNPO-203ENST00000518872 SF3B3Q15393 1217 aaKnown RBP38.2■■■■□ 3.71
SYNPO-203ENST00000518872 FAM89AQ96GI7 184 aa38.2■■■■□ 3.71
SYNPO-203ENST00000518872 DDX46Q7L014 1031 aaKnown RBP38.19■■■■□ 3.7
SYNPO-203ENST00000518872 CCDC191Q8NCU4 936 aa38.19■■■■□ 3.7
SYNPO-203ENST00000518872 METTL22Q9BUU2 404 aaPredicted RBP38.19■■■■□ 3.7
SYNPO-203ENST00000518872 SCN4AP35499 1836 aa38.19■■■■□ 3.7
SYNPO-203ENST00000518872 TAF1P21675 1872 aa38.18■■■■□ 3.7
SYNPO-203ENST00000518872 ZBTB38Q8NAP3 1195 aaPredicted RBP38.18■■■■□ 3.7
SYNPO-203ENST00000518872 SALL2Q9Y467 1007 aaPredicted RBP38.18■■■■□ 3.7
SYNPO-203ENST00000518872 FZD9O00144 591 aa38.17■■■■□ 3.7
SYNPO-203ENST00000518872 GRAPQ13588 217 aa38.17■■■■□ 3.7
SYNPO-203ENST00000518872 GRAPLQ8TC17 118 aaPredicted RBP38.17■■■■□ 3.7
SYNPO-203ENST00000518872 MYD88Q99836 296 aa38.17■■■■□ 3.7
SYNPO-203ENST00000518872 TMX4Q9H1E5 349 aaPredicted RBP38.17■■■■□ 3.7
SYNPO-203ENST00000518872 LRRC37AA6NMS7 1700 aa38.16■■■■□ 3.7
SYNPO-203ENST00000518872 DDNO94850 711 aaPredicted RBP38.16■■■■□ 3.7
SYNPO-203ENST00000518872 KSR2Q6VAB6 950 aa38.16■■■■□ 3.7
SYNPO-203ENST00000518872 TMC4Q7Z404 712 aa38.16■■■■□ 3.7
SYNPO-203ENST00000518872 SP8Q8IXZ3 490 aa38.16■■■■□ 3.7
SYNPO-203ENST00000518872 L3MBTL3Q96JM7 780 aaPredicted RBP38.16■■■■□ 3.7
SYNPO-203ENST00000518872 HSP90B1P14625 803 aaKnown RBP38.15■■■■□ 3.7
SYNPO-203ENST00000518872 SMC1BQ8NDV3 1235 aa38.15■■■■□ 3.7
SYNPO-203ENST00000518872 VPS33BQ9H267 617 aa38.15■■■■□ 3.7
SYNPO-203ENST00000518872 IRS4O14654 1257 aaPredicted RBP38.14■■■■□ 3.7
SYNPO-203ENST00000518872 APLP1P51693 650 aa38.13■■■■□ 3.69
SYNPO-203ENST00000518872 SLC51AQ86UW1 340 aa38.13■■■■□ 3.69
SYNPO-203ENST00000518872 JDP2Q8WYK2 163 aa38.13■■■■□ 3.69
SYNPO-203ENST00000518872 ZNF428Q96B54 188 aa38.13■■■■□ 3.69
SYNPO-203ENST00000518872 RTFDC1Q9BY42 306 aaPredicted RBP38.13■■■■□ 3.69
SYNPO-203ENST00000518872 MAP3K2Q9Y2U5 619 aa38.13■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms