RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 LEKR1Q6ZMV7 388 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 CCDC186Q7Z3E2 898 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 CEP131Q9UPN4 1083 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 KLF18A0A0U1RQI7 1052 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 FAM193AP78312 1265 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 ODF2Q5BJF6 829 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 LINS1Q8NG48 757 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 CWC15Q9P013 229 aaKnown RBP14.73□□□□□ -0.05
USP53-209ENST00000514665 SHANK2Q9UPX8 1470 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 ERLIN1O75477 346 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 RBM25P49756 843 aaKnown RBP14.72□□□□□ -0.05
USP53-209ENST00000514665 STX1AQ16623 288 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 CTCFLQ8NI51 663 aaPredicted RBP14.72□□□□□ -0.05
USP53-209ENST00000514665 PDCL3Q9H2J4 239 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 PRM3Q9NNZ6 103 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 RIMS2Q9UQ26 1411 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 ALDH1L1O75891 902 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 UVSSAQ2YD98 709 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 ANO6Q4KMQ2 910 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 TMEM67Q5HYA8 995 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 DISP1Q96F81 1524 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 HSP90AA4PQ58FG1 418 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 TMCO3Q6UWJ1 677 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 CHST3Q7LGC8 479 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 UHRF1BP1LA0JNW5 1464 aa14.72□□□□□ -0.05
USP53-209ENST00000514665 KIF2AO00139 706 aaPredicted RBP14.71□□□□□ -0.05
USP53-209ENST00000514665 IQCA1Q86XH1 822 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 ZSCAN29Q8IWY8 852 aaPredicted RBP14.71□□□□□ -0.05
USP53-209ENST00000514665 MKNK2Q9HBH9 465 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 SOS1Q07889 1333 aaPredicted RBP14.71□□□□□ -0.05
USP53-209ENST00000514665 CAVIN4Q5BKX8 364 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 Q6ZUG5 572 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 ZKSCAN5Q9Y2L8 839 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 ZMYM4Q5VZL5 1548 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 ADAMTS12P58397 1594 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 KIF4BQ2VIQ3 1234 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 KIAA1328Q86T90 577 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 CCDC102AQ96A19 550 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 FLT4P35916 1363 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 MSH6P52701 1360 aa14.71□□□□□ -0.05
USP53-209ENST00000514665 EIF2AK4Q9P2K8 1649 aaKnown RBP14.71□□□□□ -0.06
USP53-209ENST00000514665 ADAMTS2O95450 1211 aa14.71□□□□□ -0.06
USP53-209ENST00000514665 IL13P35225 146 aa14.71□□□□□ -0.06
USP53-209ENST00000514665 NFATC2IPQ8NCF5 419 aa14.71□□□□□ -0.06
USP53-209ENST00000514665 DNAJC25Q9H1X3 360 aa14.71□□□□□ -0.06
USP53-209ENST00000514665 ZNF518AQ6AHZ1 1483 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 SLC5A1P13866 664 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 RBM5P52756 815 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP53-209ENST00000514665 SSRP1Q08945 709 aaKnown RBP14.7□□□□□ -0.06
USP53-209ENST00000514665 NOLC1Q14978 699 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP53-209ENST00000514665 FAM200AQ8TCP9 573 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 BMP2KQ9NSY1 1161 aaPredicted RBP14.7□□□□□ -0.06
USP53-209ENST00000514665 ZSCAN12O43309 604 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 METAP2P50579 478 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP53-209ENST00000514665 NCOA7Q8NI08 942 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 SLC26A6Q9BXS9 759 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 TSPYL1Q9H0U9 437 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 CENPHQ9H3R5 247 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 SPDYE4A6NLX3 237 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 SYT1P21579 422 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 AKAP4Q5JQC9 854 aa14.7□□□□□ -0.06
USP53-209ENST00000514665 ZSCAN16Q9H4T2 348 aaPredicted RBP14.7□□□□□ -0.06
USP53-209ENST00000514665 IQSEC3Q9UPP2 1182 aaPredicted RBP14.7□□□□□ -0.06
USP53-209ENST00000514665 MAGI3Q5TCQ9 1506 aa14.69□□□□□ -0.06
USP53-209ENST00000514665 CABLES1Q8TDN4 633 aa14.69□□□□□ -0.06
USP53-209ENST00000514665 MCMDC2Q4G0Z9 681 aa14.69□□□□□ -0.06
USP53-209ENST00000514665 LUC7LQ9NQ29 371 aaKnown RBP14.69□□□□□ -0.06
USP53-209ENST00000514665 HSP90AB3PQ58FF7 597 aa14.68□□□□□ -0.06
USP53-209ENST00000514665 EIF3JO75822 258 aaKnown RBP14.68□□□□□ -0.06
USP53-209ENST00000514665 SLC4A8Q2Y0W8 1093 aa14.68□□□□□ -0.06
USP53-209ENST00000514665 CREB3L3Q68CJ9 461 aa14.68□□□□□ -0.06
USP53-209ENST00000514665 FAM173BQ6P4H8 233 aa14.68□□□□□ -0.06
USP53-209ENST00000514665 RRAGDQ9NQL2 400 aaPredicted RBP14.68□□□□□ -0.06
USP53-209ENST00000514665 YTHDC2Q9H6S0 1430 aaKnown RBP14.68□□□□□ -0.06
USP53-209ENST00000514665 PIP4K2BP78356 416 aa14.68□□□□□ -0.06
USP53-209ENST00000514665 CHL1O00533 1208 aa14.68□□□□□ -0.06
USP53-209ENST00000514665 MARCKSP29966 332 aaPredicted RBP14.68□□□□□ -0.06
USP53-209ENST00000514665 BLMP54132 1417 aaPredicted RBP14.68□□□□□ -0.06
USP53-209ENST00000514665 ADGRL2O95490 1459 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 WDR7Q9Y4E6 1490 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 PNMA6EA0A0J9YXQ4 647 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 PPP4R3BQ5MIZ7 849 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 CCDC102BQ68D86 513 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 DZIP1Q86YF9 867 aaKnown RBP14.67□□□□□ -0.06
USP53-209ENST00000514665 RNF41Q9H4P4 317 aaPredicted RBP14.67□□□□□ -0.06
USP53-209ENST00000514665 ZSWIM4Q9H7M6 989 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 ABCC1P33527 1531 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 PTPRTO14522 1441 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 NLRP5P59047 1200 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 RBSNQ9H1K0 784 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 ZNF652Q9Y2D9 606 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 GSDMDP57764 484 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 ATP2B3Q16720 1220 aa14.67□□□□□ -0.06
USP53-209ENST00000514665 POLR3GO15318 223 aaPredicted RBP14.66□□□□□ -0.06
USP53-209ENST00000514665 NEMFO60524 1076 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 SYCP1Q15431 976 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 ENOX2Q16206 610 aaKnown RBP14.66□□□□□ -0.06
USP53-209ENST00000514665 KLHDC4Q8TBB5 520 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 INTS4Q96HW7 963 aaKnown RBP14.66□□□□□ -0.06
USP53-209ENST00000514665 KIF5CO60282 957 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms