RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 ERFEQ4G0M1 354 aa10.61□□□□□ -0.71
CCL28-204ENST00000514421 DALRD3Q5D0E6 543 aaKnown RBP10.61□□□□□ -0.71
CCL28-204ENST00000514421 PI4KAP1Q8N8J0 262 aa10.61□□□□□ -0.71
CCL28-204ENST00000514421 METTL22Q9BUU2 404 aaPredicted RBP10.61□□□□□ -0.71
CCL28-204ENST00000514421 ZNF219Q9P2Y4 722 aaPredicted RBP10.61□□□□□ -0.71
CCL28-204ENST00000514421 UBN2Q6ZU65 1347 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 ATP10DQ9P241 1426 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 ATP5J2-PTCD1G3V325 749 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 NTSR2O95665 410 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 YBX3P16989 372 aaKnown RBP eCLIP10.6□□□□□ -0.71
CCL28-204ENST00000514421 NUTM1Q86Y26 1132 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 TTLL6Q8N841 843 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 ZNF622Q969S3 477 aaKnown RBP eCLIP10.6□□□□□ -0.71
CCL28-204ENST00000514421 MASTLQ96GX5 879 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 MYD88Q99836 296 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 TRMT112Q9UI30 125 aaKnown RBP10.6□□□□□ -0.71
CCL28-204ENST00000514421 RCAN3Q9UKA8 241 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 WWC3Q9ULE0 1092 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 BCS1LQ9Y276 419 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 MAP3K2Q9Y2U5 619 aa10.6□□□□□ -0.71
CCL28-204ENST00000514421 C4AP0C0L4 1744 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 SRGNP10124 158 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 NEXNQ0ZGT2 675 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 FKBP5Q13451 457 aaPredicted RBP10.59□□□□□ -0.71
CCL28-204ENST00000514421 ALDH1L2Q3SY69 923 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 CCDC191Q8NCU4 936 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 CNKSR1Q969H4 720 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 NLRP3Q96P20 1036 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 PPP4R2Q9NY27 417 aa10.59□□□□□ -0.71
CCL28-204ENST00000514421 PXDNLA1KZ92 1463 aa10.58□□□□□ -0.72
CCL28-204ENST00000514421 IBTKQ9P2D0 1353 aaPredicted RBP10.58□□□□□ -0.72
CCL28-204ENST00000514421 NPR1P16066 1061 aa10.58□□□□□ -0.72
CCL28-204ENST00000514421 ALDH1B1P30837 517 aa10.58□□□□□ -0.72
CCL28-204ENST00000514421 STYK1Q6J9G0 422 aa10.58□□□□□ -0.72
CCL28-204ENST00000514421 MRPL50Q8N5N7 158 aaKnown RBP10.58□□□□□ -0.72
CCL28-204ENST00000514421 SSH1Q8WYL5 1049 aa10.58□□□□□ -0.72
CCL28-204ENST00000514421 SH3TC1Q8TE82 1336 aa10.58□□□□□ -0.72
CCL28-204ENST00000514421 LAMB4A4D0S4 1761 aa10.57□□□□□ -0.72
CCL28-204ENST00000514421 HSP90B1P14625 803 aaKnown RBP10.57□□□□□ -0.72
CCL28-204ENST00000514421 RRP1P56182 461 aaKnown RBP10.57□□□□□ -0.72
CCL28-204ENST00000514421 ARHGAP27Q6ZUM4 889 aa10.57□□□□□ -0.72
CCL28-204ENST00000514421 SYNE4Q8N205 404 aa10.57□□□□□ -0.72
CCL28-204ENST00000514421 ZBTB38Q8NAP3 1195 aaPredicted RBP10.57□□□□□ -0.72
CCL28-204ENST00000514421 DNAAF4Q8WXU2 420 aa10.57□□□□□ -0.72
CCL28-204ENST00000514421 FAM89AQ96GI7 184 aa10.57□□□□□ -0.72
CCL28-204ENST00000514421 CWC25Q9NXE8 425 aaPredicted RBP10.57□□□□□ -0.72
CCL28-204ENST00000514421 IGKV5-2P06315 115 aa10.56□□□□□ -0.72
CCL28-204ENST00000514421 HCLS1P14317 486 aaPredicted RBP10.56□□□□□ -0.72
CCL28-204ENST00000514421 HOXA10P31260 410 aaPredicted RBP10.56□□□□□ -0.72
CCL28-204ENST00000514421 CRY2Q49AN0 593 aa10.56□□□□□ -0.72
CCL28-204ENST00000514421 RBM17Q96I25 401 aaKnown RBP10.56□□□□□ -0.72
CCL28-204ENST00000514421 ADCY9O60503 1353 aa10.55□□□□□ -0.72
CCL28-204ENST00000514421 IRS4O14654 1257 aaPredicted RBP10.55□□□□□ -0.72
CCL28-204ENST00000514421 PCCAP05165 728 aaPredicted RBP10.55□□□□□ -0.72
CCL28-204ENST00000514421 LINS1Q8NG48 757 aa10.55□□□□□ -0.72
CCL28-204ENST00000514421 RPGRQ92834 1020 aaKnown RBP10.55□□□□□ -0.72
CCL28-204ENST00000514421 CRAMP1Q96RY5 1269 aa10.55□□□□□ -0.72
CCL28-204ENST00000514421 NEURL1BA8MQ27 555 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 F6X3S4 739 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 H7C1W4 665 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 C21orf2O43822 256 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 RARSP54136 660 aaKnown RBP10.54□□□□□ -0.72
CCL28-204ENST00000514421 BRPF1P55201 1214 aaPredicted RBP10.54□□□□□ -0.72
CCL28-204ENST00000514421 GCKRQ14397 625 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 SF3B3Q15393 1217 aaKnown RBP10.54□□□□□ -0.72
CCL28-204ENST00000514421 RTL5Q5HYW3 569 aaPredicted RBP10.54□□□□□ -0.72
CCL28-204ENST00000514421 BEND3Q5T5X7 828 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 C3orf67Q6ZVT6 689 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 SMC4Q9NTJ3 1288 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 PTPRCP08575 1304 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 NUP98P52948 1817 aa10.54□□□□□ -0.72
CCL28-204ENST00000514421 ABCC12Q96J65 1359 aa10.53□□□□□ -0.72
CCL28-204ENST00000514421 BBOX1O75936 387 aa10.53□□□□□ -0.72
CCL28-204ENST00000514421 CWF19L2Q2TBE0 894 aaKnown RBP10.53□□□□□ -0.72
CCL28-204ENST00000514421 SOGA3Q5TF21 947 aa10.53□□□□□ -0.72
CCL28-204ENST00000514421 PRPF40BQ6NWY9 871 aaKnown RBP10.53□□□□□ -0.72
CCL28-204ENST00000514421 DDX46Q7L014 1031 aaKnown RBP10.53□□□□□ -0.72
CCL28-204ENST00000514421 C7orf43Q8WVR3 580 aa10.53□□□□□ -0.72
CCL28-204ENST00000514421 JARID2Q92833 1246 aaPredicted RBP10.53□□□□□ -0.72
CCL28-204ENST00000514421 BCL2L13Q9BXK5 485 aa10.53□□□□□ -0.72
CCL28-204ENST00000514421 SCN7AQ01118 1682 aa10.53□□□□□ -0.72
CCL28-204ENST00000514421 NRXN2Q9P2S2 1712 aa10.53□□□□□ -0.72
CCL28-204ENST00000514421 RIC1Q4ADV7 1423 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 AFDNP55196 1824 aaKnown RBP10.52□□□□□ -0.73
CCL28-204ENST00000514421 PDE8AO60658 829 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 ALDH1L1O75891 902 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 YY1P25490 414 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 CC2D2BQ6DHV5 1058 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 SLC4A10Q6U841 1118 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 SRCIN1Q9C0H9 1055 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 NOB1Q9ULX3 412 aaKnown RBP10.52□□□□□ -0.73
CCL28-204ENST00000514421 BCORQ6W2J9 1755 aa10.52□□□□□ -0.73
CCL28-204ENST00000514421 KIF13BQ9NQT8 1826 aa10.51□□□□□ -0.73
CCL28-204ENST00000514421 IPO8O15397 1037 aaKnown RBP10.51□□□□□ -0.73
CCL28-204ENST00000514421 IRX6P78412 446 aaPredicted RBP10.51□□□□□ -0.73
CCL28-204ENST00000514421 GRIPAP1Q4V328 841 aa10.51□□□□□ -0.73
CCL28-204ENST00000514421 RTKN2Q8IZC4 609 aa10.51□□□□□ -0.73
CCL28-204ENST00000514421 ARHGAP45Q92619 1136 aa10.51□□□□□ -0.73
CCL28-204ENST00000514421 API5Q9BZZ5 524 aaKnown RBP10.51□□□□□ -0.73
CCL28-204ENST00000514421 TMX4Q9H1E5 349 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms