RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 TCIRG1Q13488 830 aa17.07■□□□□ 0.32
PDLIM3-210ENST00000514308 CCDC93Q567U6 631 aa17.07■□□□□ 0.32
PDLIM3-210ENST00000514308 ANKRD13DQ6ZTN6 518 aa17.07■□□□□ 0.32
PDLIM3-210ENST00000514308 PLBD2Q8NHP8 589 aa17.07■□□□□ 0.32
PDLIM3-210ENST00000514308 LTBP3Q9NS15 1303 aa17.06■□□□□ 0.32
PDLIM3-210ENST00000514308 NUP98P52948 1817 aa17.06■□□□□ 0.32
PDLIM3-210ENST00000514308 SENP3-EIF4A1A0A087X0R7 540 aa17.06■□□□□ 0.32
PDLIM3-210ENST00000514308 KIF3CO14782 793 aa17.06■□□□□ 0.32
PDLIM3-210ENST00000514308 PRELPP51888 382 aa17.05■□□□□ 0.32
PDLIM3-210ENST00000514308 NLRP10Q86W26 655 aa17.05■□□□□ 0.32
PDLIM3-210ENST00000514308 C8orf58Q8NAV2 365 aa17.05■□□□□ 0.32
PDLIM3-210ENST00000514308 C7orf43Q8WVR3 580 aa17.05■□□□□ 0.32
PDLIM3-210ENST00000514308 NLRP3Q96P20 1036 aa17.05■□□□□ 0.32
PDLIM3-210ENST00000514308 NMRK2Q9NPI5 230 aa17.05■□□□□ 0.32
PDLIM3-210ENST00000514308 IL16Q14005 1332 aa17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 HOXA10P31260 410 aaPredicted RBP17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 SLC10A5Q5PT55 438 aa17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 CCDC30Q5VVM6 783 aa17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 RTKN2Q8IZC4 609 aa17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 TSR2Q969E8 191 aaKnown RBP17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 RBM17Q96I25 401 aaKnown RBP17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 TRMT112Q9UI30 125 aaKnown RBP17.04■□□□□ 0.32
PDLIM3-210ENST00000514308 TOMM70O94826 608 aa17.03■□□□□ 0.32
PDLIM3-210ENST00000514308 GOLGA2Q08379 1002 aa17.03■□□□□ 0.32
PDLIM3-210ENST00000514308 FAM9BQ8IZU0 186 aa17.03■□□□□ 0.32
PDLIM3-210ENST00000514308 SLX4Q8IY92 1834 aa17.03■□□□□ 0.32
PDLIM3-210ENST00000514308 SH3TC1Q8TE82 1336 aa17.02■□□□□ 0.32
PDLIM3-210ENST00000514308 CC2D2BQ6DHV5 1058 aa17.02■□□□□ 0.32
PDLIM3-210ENST00000514308 DPY19L2Q6NUT2 758 aa17.02■□□□□ 0.32
PDLIM3-210ENST00000514308 RIC3Q7Z5B4 369 aa17.02■□□□□ 0.32
PDLIM3-210ENST00000514308 C16orf71Q8IYS4 520 aaPredicted RBP17.02■□□□□ 0.32
PDLIM3-210ENST00000514308 CRAMP1Q96RY5 1269 aa17.02■□□□□ 0.32
PDLIM3-210ENST00000514308 TNRC6CQ9HCJ0 1690 aaKnown RBP17.01■□□□□ 0.31
PDLIM3-210ENST00000514308 GLTPD2A6NH11 291 aa17.01■□□□□ 0.31
PDLIM3-210ENST00000514308 FKBP4Q02790 459 aaKnown RBP eCLIP17.01■□□□□ 0.31
PDLIM3-210ENST00000514308 SALL2Q9Y467 1007 aaPredicted RBP17.01■□□□□ 0.31
PDLIM3-210ENST00000514308 GTF3C3Q9Y5Q9 886 aa17.01■□□□□ 0.31
PDLIM3-210ENST00000514308 SBF1O95248 1867 aa17.01■□□□□ 0.31
PDLIM3-210ENST00000514308 DDX58O95786 925 aaKnown RBP17■□□□□ 0.31
PDLIM3-210ENST00000514308 GRIPAP1Q4V328 841 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 OLFM4Q6UX06 510 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 C3orf67Q6ZVT6 689 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 WDR63Q8IWG1 891 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 TSPYL6Q8N831 410 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 ISCA1Q9BUE6 129 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 STK31Q9BXU1 1019 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 TMX4Q9H1E5 349 aaPredicted RBP17■□□□□ 0.31
PDLIM3-210ENST00000514308 PHAXQ9H814 394 aaKnown RBP17■□□□□ 0.31
PDLIM3-210ENST00000514308 RRAGCQ9HB90 399 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 ARFGEF2Q9Y6D5 1785 aa17■□□□□ 0.31
PDLIM3-210ENST00000514308 ATP5J2-PTCD1G3V325 749 aa16.99■□□□□ 0.31
PDLIM3-210ENST00000514308 HCLS1P14317 486 aaPredicted RBP16.99■□□□□ 0.31
PDLIM3-210ENST00000514308 TWISTNBQ3B726 338 aaPredicted RBP16.99■□□□□ 0.31
PDLIM3-210ENST00000514308 PPEF1O14829 653 aaPredicted RBP16.98■□□□□ 0.31
PDLIM3-210ENST00000514308 TRIM28Q13263 835 aaKnown RBP16.98■□□□□ 0.31
PDLIM3-210ENST00000514308 ZNF277Q9NRM2 450 aaPredicted RBP16.98■□□□□ 0.31
PDLIM3-210ENST00000514308 FER1L6Q2WGJ9 1857 aa16.98■□□□□ 0.31
PDLIM3-210ENST00000514308 VEGFAP15692 232 aaPredicted RBP16.97■□□□□ 0.31
PDLIM3-210ENST00000514308 SYNE4Q8N205 404 aa16.97■□□□□ 0.31
PDLIM3-210ENST00000514308 RBM46Q8TBY0 533 aaKnown RBP16.97■□□□□ 0.31
PDLIM3-210ENST00000514308 ZNF428Q96B54 188 aa16.97■□□□□ 0.31
PDLIM3-210ENST00000514308 PSMD1Q99460 953 aa16.97■□□□□ 0.31
PDLIM3-210ENST00000514308 FANCIQ9NVI1 1328 aa16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 BBOX1O75936 387 aa16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 HSP90B1P14625 803 aaKnown RBP16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 HSPA6P17066 643 aa16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 IARSP41252 1262 aaKnown RBP16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 DDX46Q7L014 1031 aaKnown RBP16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 FAM89AQ96GI7 184 aa16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 ANKRD36CQ5JPF3 1778 aa16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 CACNA1SQ13698 1873 aa16.96■□□□□ 0.31
PDLIM3-210ENST00000514308 ABCC4O15439 1325 aa16.96■□□□□ 0.3
PDLIM3-210ENST00000514308 TCERG1O14776 1098 aaKnown RBP16.95■□□□□ 0.3
PDLIM3-210ENST00000514308 MYD88Q99836 296 aa16.95■□□□□ 0.3
PDLIM3-210ENST00000514308 ATP6V0A2Q9Y487 856 aa16.95■□□□□ 0.3
PDLIM3-210ENST00000514308 TIAM2Q8IVF5 1701 aa16.95■□□□□ 0.3
PDLIM3-210ENST00000514308 RTL5Q5HYW3 569 aaPredicted RBP16.94■□□□□ 0.3
PDLIM3-210ENST00000514308 KSR2Q6VAB6 950 aa16.94■□□□□ 0.3
PDLIM3-210ENST00000514308 ZBTB38Q8NAP3 1195 aaPredicted RBP16.94■□□□□ 0.3
PDLIM3-210ENST00000514308 CCDC191Q8NCU4 936 aa16.94■□□□□ 0.3
PDLIM3-210ENST00000514308 JDP2Q8WYK2 163 aa16.94■□□□□ 0.3
PDLIM3-210ENST00000514308 METTL22Q9BUU2 404 aaPredicted RBP16.94■□□□□ 0.3
PDLIM3-210ENST00000514308 MYH16Q9H6N6 1097 aa16.94■□□□□ 0.3
PDLIM3-210ENST00000514308 IRS4O14654 1257 aaPredicted RBP16.93■□□□□ 0.3
PDLIM3-210ENST00000514308 SLC4A2P04920 1241 aa16.93■□□□□ 0.3
PDLIM3-210ENST00000514308 FSTL1Q12841 308 aa16.93■□□□□ 0.3
PDLIM3-210ENST00000514308 MAP3K2Q9Y2U5 619 aa16.93■□□□□ 0.3
PDLIM3-210ENST00000514308 SNED1Q8TER0 1413 aa16.93■□□□□ 0.3
PDLIM3-210ENST00000514308 PI4KAP2A4QPH2 592 aa16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 DDNO94850 711 aaPredicted RBP16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 NEXNQ0ZGT2 675 aa16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 GRAPQ13588 217 aa16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 SF3B3Q15393 1217 aaKnown RBP16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 TMC4Q7Z404 712 aa16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 PI4KAP1Q8N8J0 262 aa16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 GRAPLQ8TC17 118 aaPredicted RBP16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 CWC25Q9NXE8 425 aaPredicted RBP16.92■□□□□ 0.3
PDLIM3-210ENST00000514308 HNRNPUQ00839 825 aaKnown RBP eCLIP16.91■□□□□ 0.3
PDLIM3-210ENST00000514308 EXOSC9Q06265 439 aaKnown RBP16.91■□□□□ 0.3
PDLIM3-210ENST00000514308 SP8Q8IXZ3 490 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms