RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MIER3Q7Z3K6 550 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 RAB3IPQ96QF0 476 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 A0A087WZG4 1122 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 CCDC186Q7Z3E2 898 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 NECTIN2Q92692 538 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 PIBF1Q8WXW3 757 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 CDCA7LQ96GN5 454 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 THEGQ9P2T0 379 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 PPFIA4O75335 1185 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 DNAJC8O75937 253 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 EVA1CP58658 441 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 PRPF4BQ13523 1007 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 HSP90AA5PQ58FG0 334 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 PLCD3Q8N3E9 789 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 ZNF76P36508 570 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 MLECQ14165 292 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 CPLX3Q8WVH0 158 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 NUF2Q9BZD4 464 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 HDAC9Q9UKV0 1011 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 GCKP35557 465 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 CKAP2LQ8IYA6 745 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 TSGA10Q9BZW7 698 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 COMMD10Q9Y6G5 202 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 FYB2Q5VWT5 728 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 PHLDB3Q6NSJ2 640 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 KCNG4Q8TDN1 519 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 TBC1D5Q92609 795 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 GBP5Q96PP8 586 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 TSPYL2Q9H2G4 693 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 TCP11L1Q9NUJ3 509 aa12.8□□□□□ -0.36
LIMCH1-217ENST00000512946 MACROD2A1Z1Q3 448 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 PLEKHO1Q53GL0 409 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 KIF6Q6ZMV9 814 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 FERMT3Q86UX7 667 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 CALML4Q96GE6 196 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 RNF41Q9H4P4 317 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 HMG20BQ9P0W2 317 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 AKNAQ7Z591 1439 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 BMP2KLQ5H9B9 411 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 DRC1Q96MC2 740 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 CEP126Q9P2H0 1117 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 NDC80O14777 642 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 ZEB2O60315 1214 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 CNGA1P29973 690 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 PPFIA1Q13136 1202 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 ALDH1L2Q3SY69 923 aa12.79□□□□□ -0.36
LIMCH1-217ENST00000512946 MTHFSP49914 203 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 CLUL1Q15846 466 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 CNNM1Q9NRU3 951 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 SEC63Q9UGP8 760 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 ATAD2Q6PL18 1390 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 CWC27Q6UX04 472 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 AACSQ86V21 672 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 SNX21Q969T3 373 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 FERMT2Q96AC1 680 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 SELENOSQ9BQE4 189 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 RLBP1P12271 317 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 HCLS1P14317 486 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 HMGB2P26583 209 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 CCDC14Q49A88 953 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 RAB11FIP4Q86YS3 637 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 RNF10Q8N5U6 811 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 TBC1D32Q96NH3 1257 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 ABCC11Q96J66 1382 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 MYRIPQ8NFW9 859 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 SEC62Q99442 399 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 EHMT1Q9H9B1 1298 aa12.78□□□□□ -0.36
LIMCH1-217ENST00000512946 MATR3P43243 847 aaKnown RBP eCLIP12.77□□□□□ -0.36
LIMCH1-217ENST00000512946 CCDC96Q2M329 555 aa12.77□□□□□ -0.36
LIMCH1-217ENST00000512946 SLC4A2P04920 1241 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 HDGFL1Q5TGJ6 251 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 RPAINQ86UA6 219 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 CCDC26Q8TAB7 109 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 ZSWIM4Q9H7M6 989 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 DBN1Q16643 649 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 PPP1R12CQ9BZL4 782 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 PSMC4P43686 418 aa12.77□□□□□ -0.37
LIMCH1-217ENST00000512946 Q9H521 79 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 MTMR7Q9Y216 660 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 PPP1R2P41236 205 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 CALCOCO2Q13137 446 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 GPR161Q8N6U8 529 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 MTUS1Q9ULD2 1270 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 ANKRD30BQ9BXX2 1392 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 BCAR3O75815 825 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 SYT1P21579 422 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 CABS1Q96KC9 395 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 CCDC194A0A1B0GVG4 234 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 CSRNP2Q9H175 543 aa12.76□□□□□ -0.37
LIMCH1-217ENST00000512946 KDM4AO75164 1064 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 ZSCAN22P10073 491 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 SSRP1Q08945 709 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 CEP85LQ5SZL2 805 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 CNGA4Q8IV77 575 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 ANKRD24Q8TF21 1146 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 EFCC1Q9HA90 598 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 MYOM3Q5VTT5 1437 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 PPP2R3AQ06190 1150 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 ATL3Q6DD88 541 aa12.75□□□□□ -0.37
LIMCH1-217ENST00000512946 TAOK1Q7L7X3 1001 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms