RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DDX19AQ9NUU7 478 aaKnown RBP14□□□□□ -0.17
LIMCH1-213ENST00000511496 RDXP35241 583 aaKnown RBP13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 HNRNPMP52272 730 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 IQCB1Q15051 598 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 TICAM2Q86XR7 235 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 MRPL50Q8N5N7 158 aaKnown RBP13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 CLSTN2Q9H4D0 955 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 SYNMO15061 1565 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 ABCC10Q5T3U5 1492 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 FRMD3A2A2Y4 597 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 RPS6KA5O75582 802 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 SCRN1Q12765 414 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 ERC1Q8IUD2 1116 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 ELF1P32519 619 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 PDE1AP54750 535 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 PPP2R3AQ06190 1150 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 VEZTQ9HBM0 779 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 LIMCH1Q9UPQ0 1083 aa13.99□□□□□ -0.17
LIMCH1-213ENST00000511496 CC2D2AQ9P2K1 1620 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 EXOC5O00471 708 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 LARGE1O95461 756 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 PDE6BP35913 854 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 LARP1BQ659C4 914 aaKnown RBP13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 FAXDC2Q96IV6 333 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 PSDA5PKW4 1024 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 EIF3JO75822 258 aaKnown RBP13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 NF2P35240 595 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 SARM1Q6SZW1 724 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 DDX54Q8TDD1 881 aaKnown RBP13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 FMNL2Q96PY5 1086 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 PRAM1Q96QH2 718 aa13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 THUMPD2Q9BTF0 503 aaKnown RBP13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 CCDC9Q9Y3X0 531 aaKnown RBP13.98□□□□□ -0.17
LIMCH1-213ENST00000511496 RUFY3Q7L099 469 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 ERCC4Q92889 916 aaPredicted RBP13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 FAM204AQ9H8W3 233 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 PARP3Q9Y6F1 533 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 ERCC6Q03468 1493 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 ARMCX5Q6P1M9 558 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 AOPEPQ8N6M6 819 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 CLIC6Q96NY7 704 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 FANCGO15287 622 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 CCT5P48643 541 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 NECAB1Q8N987 351 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 CD248Q9HCU0 757 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 TDRD9Q8NDG6 1382 aaKnown RBP13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 NSD3Q9BZ95 1437 aa13.97□□□□□ -0.17
LIMCH1-213ENST00000511496 GNG11P61952 73 aa13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 GNAI1P63096 354 aa13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 NEDD9Q14511 834 aa13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 HDXQ7Z353 690 aa13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 CEBPZQ03701 1054 aaKnown RBP13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 KRT24Q2M2I5 525 aa13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 PHLPP2Q6ZVD8 1323 aa13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 PRG4Q92954 1404 aaPredicted RBP13.96□□□□□ -0.17
LIMCH1-213ENST00000511496 KIF3CO14782 793 aa13.96□□□□□ -0.18
LIMCH1-213ENST00000511496 VAMP4O75379 141 aa13.96□□□□□ -0.18
LIMCH1-213ENST00000511496 CHMLP26374 656 aa13.96□□□□□ -0.18
LIMCH1-213ENST00000511496 KIRREL3Q8IZU9 778 aa13.96□□□□□ -0.18
LIMCH1-213ENST00000511496 ANKRD44Q8N8A2 993 aa13.96□□□□□ -0.18
LIMCH1-213ENST00000511496 TBC1D22AQ8WUA7 517 aa13.96□□□□□ -0.18
LIMCH1-213ENST00000511496 CFAP65Q6ZU64 1925 aaKnown RBP13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 ADGRL2O95490 1459 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 MAP2K7O14733 419 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 JAKMIP3Q5VZ66 844 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 UTP14AQ9BVJ6 771 aaKnown RBP13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 FAM169AQ9Y6X4 670 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 C9orf84Q5VXU9 1444 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 CCDC151A5D8V7 595 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 VPS53Q5VIR6 699 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 TRIM65Q6PJ69 517 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 CDC37L1Q7L3B6 337 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 FAM107BQ9H098 131 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 CAPN7Q9Y6W3 813 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 TTC41PQ6P2S7 1318 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 GOLGA1Q92805 767 aa13.95□□□□□ -0.18
LIMCH1-213ENST00000511496 ITSN2Q9NZM3 1697 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 INPP5BP32019 993 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 INHBEP58166 350 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 RABGGTAQ92696 567 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 ACBD3Q9H3P7 528 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 KCND1Q9NSA2 647 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 IRAK4Q9NWZ3 460 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 IFNKQ9P0W0 207 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 PUF60Q9UHX1 559 aaKnown RBP13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 CD109Q6YHK3 1445 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 EBAG9O00559 213 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 IL25Q9H293 177 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 CENPHQ9H3R5 247 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 ODF2LQ9ULJ1 636 aa13.94□□□□□ -0.18
LIMCH1-213ENST00000511496 KLHL33A6NCF5 533 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 SKAP2O75563 359 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 MAP4K4O95819 1239 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 ARID4AP29374 1257 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 TXLNAP40222 546 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 RBM5P52756 815 aaKnown RBP eCLIP13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 CEP85Q6P2H3 762 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 TRIM6Q9C030 488 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 XPO4Q9C0E2 1151 aaKnown RBP13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 NPHP3Q7Z494 1330 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms