RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 IGKV5-2P06315 115 aa18.75■□□□□ 0.59
RNF4-213ENST00000509388 ST5P78524 1137 aa18.75■□□□□ 0.59
RNF4-213ENST00000509388 PPP1R1BQ9UD71 204 aaPredicted RBP18.75■□□□□ 0.59
RNF4-213ENST00000509388 C9orf78Q9NZ63 289 aaPredicted RBP18.74■□□□□ 0.59
RNF4-213ENST00000509388 PTGER2P43116 358 aa18.73■□□□□ 0.59
RNF4-213ENST00000509388 RRP1P56182 461 aaKnown RBP18.73■□□□□ 0.59
RNF4-213ENST00000509388 GCKRQ14397 625 aa18.73■□□□□ 0.59
RNF4-213ENST00000509388 KLHL34Q8N239 644 aa18.73■□□□□ 0.59
RNF4-213ENST00000509388 BCORQ6W2J9 1755 aa18.73■□□□□ 0.59
RNF4-213ENST00000509388 ABCC4O15439 1325 aa18.73■□□□□ 0.59
RNF4-213ENST00000509388 SH3TC1Q8TE82 1336 aa18.73■□□□□ 0.59
RNF4-213ENST00000509388 HSP90B1P14625 803 aaKnown RBP18.72■□□□□ 0.59
RNF4-213ENST00000509388 RTL5Q5HYW3 569 aaPredicted RBP18.72■□□□□ 0.59
RNF4-213ENST00000509388 PRR5LQ6MZQ0 368 aa18.72■□□□□ 0.59
RNF4-213ENST00000509388 NUTM1Q86Y26 1132 aa18.72■□□□□ 0.59
RNF4-213ENST00000509388 ZBTB38Q8NAP3 1195 aaPredicted RBP18.72■□□□□ 0.59
RNF4-213ENST00000509388 TNNQ9UQP3 1299 aa18.72■□□□□ 0.59
RNF4-213ENST00000509388 SUPT16HQ9Y5B9 1047 aaKnown RBP18.72■□□□□ 0.59
RNF4-213ENST00000509388 RNF123Q5XPI4 1314 aa18.72■□□□□ 0.59
RNF4-213ENST00000509388 NTSR2O95665 410 aa18.71■□□□□ 0.59
RNF4-213ENST00000509388 INTS3Q68E01 1043 aaKnown RBP18.71■□□□□ 0.59
RNF4-213ENST00000509388 ITPRIPQ8IWB1 547 aa18.71■□□□□ 0.59
RNF4-213ENST00000509388 TMEM57Q8N5G2 664 aa18.71■□□□□ 0.59
RNF4-213ENST00000509388 FAM89AQ96GI7 184 aa18.71■□□□□ 0.59
RNF4-213ENST00000509388 SGIP1Q9BQI5 828 aa18.71■□□□□ 0.59
RNF4-213ENST00000509388 IBTKQ9P2D0 1353 aaPredicted RBP18.7■□□□□ 0.58
RNF4-213ENST00000509388 PCCAP05165 728 aaPredicted RBP18.7■□□□□ 0.58
RNF4-213ENST00000509388 PDE3AQ14432 1141 aa18.7■□□□□ 0.58
RNF4-213ENST00000509388 ERFEQ4G0M1 354 aa18.7■□□□□ 0.58
RNF4-213ENST00000509388 CCDC24Q8N4L8 307 aa18.7■□□□□ 0.58
RNF4-213ENST00000509388 PANK1Q8TE04 598 aa18.7■□□□□ 0.58
RNF4-213ENST00000509388 ARFGEF2Q9Y6D5 1785 aa18.7■□□□□ 0.58
RNF4-213ENST00000509388 PXDNLA1KZ92 1463 aa18.7■□□□□ 0.58
RNF4-213ENST00000509388 NUP98P52948 1817 aa18.7■□□□□ 0.58
RNF4-213ENST00000509388 GRM8O00222 908 aa18.69■□□□□ 0.58
RNF4-213ENST00000509388 UBE3BQ7Z3V4 1068 aa18.69■□□□□ 0.58
RNF4-213ENST00000509388 JARID2Q92833 1246 aaPredicted RBP18.69■□□□□ 0.58
RNF4-213ENST00000509388 H7C1W4 665 aa18.68■□□□□ 0.58
RNF4-213ENST00000509388 IRS4O14654 1257 aaPredicted RBP18.68■□□□□ 0.58
RNF4-213ENST00000509388 PDE6BP35913 854 aa18.68■□□□□ 0.58
RNF4-213ENST00000509388 NLRP3Q96P20 1036 aa18.68■□□□□ 0.58
RNF4-213ENST00000509388 BRIP1Q9BX63 1249 aa18.68■□□□□ 0.58
RNF4-213ENST00000509388 HDAC5Q9UQL6 1122 aa18.68■□□□□ 0.58
RNF4-213ENST00000509388 RLBP1P12271 317 aa18.67■□□□□ 0.58
RNF4-213ENST00000509388 CHMP4BQ9H444 224 aaKnown RBP18.67■□□□□ 0.58
RNF4-213ENST00000509388 GNAI3P08754 354 aa18.66■□□□□ 0.58
RNF4-213ENST00000509388 HCLS1P14317 486 aaPredicted RBP18.66■□□□□ 0.58
RNF4-213ENST00000509388 SLC10A5Q5PT55 438 aa18.66■□□□□ 0.58
RNF4-213ENST00000509388 COG6Q9Y2V7 657 aa18.66■□□□□ 0.58
RNF4-213ENST00000509388 CD2APQ9Y5K6 639 aa18.66■□□□□ 0.58
RNF4-213ENST00000509388 UBTFL1P0CB47 393 aaPredicted RBP18.65■□□□□ 0.58
RNF4-213ENST00000509388 MVPQ14764 893 aaKnown RBP18.65■□□□□ 0.58
RNF4-213ENST00000509388 C20orf194Q5TEA3 1177 aa18.65■□□□□ 0.58
RNF4-213ENST00000509388 SYNE4Q8N205 404 aa18.65■□□□□ 0.58
RNF4-213ENST00000509388 USP44Q9H0E7 712 aa18.65■□□□□ 0.58
RNF4-213ENST00000509388 CDHR2Q9BYE9 1310 aa18.65■□□□□ 0.58
RNF4-213ENST00000509388 PDE8AO60658 829 aa18.64■□□□□ 0.57
RNF4-213ENST00000509388 NBPF7P0C2Y1 421 aaPredicted RBP18.64■□□□□ 0.57
RNF4-213ENST00000509388 DDX19BQ9UMR2 479 aa18.64■□□□□ 0.57
RNF4-213ENST00000509388 PDZRN3Q9UPQ7 1066 aa18.64■□□□□ 0.57
RNF4-213ENST00000509388 H0YIN7 160 aa18.63■□□□□ 0.57
RNF4-213ENST00000509388 TGFB2P61812 414 aa18.63■□□□□ 0.57
RNF4-213ENST00000509388 C2CD5Q86YS7 1000 aa18.63■□□□□ 0.57
RNF4-213ENST00000509388 ABCC12Q96J65 1359 aa18.63■□□□□ 0.57
RNF4-213ENST00000509388 ANKRD36CQ5JPF3 1778 aa18.63■□□□□ 0.57
RNF4-213ENST00000509388 RPGRQ92834 1020 aaKnown RBP18.62■□□□□ 0.57
RNF4-213ENST00000509388 MEIS3Q99687 375 aa18.62■□□□□ 0.57
RNF4-213ENST00000509388 FHDC1Q9C0D6 1143 aaPredicted RBP18.62■□□□□ 0.57
RNF4-213ENST00000509388 UTYO14607 1347 aa18.62■□□□□ 0.57
RNF4-213ENST00000509388 C10orf71Q711Q0 1435 aa18.61■□□□□ 0.57
RNF4-213ENST00000509388 CASP7P55210 303 aa18.61■□□□□ 0.57
RNF4-213ENST00000509388 COL24A1Q17RW2 1714 aa18.6■□□□□ 0.57
RNF4-213ENST00000509388 ZBTB7BO15156 539 aaPredicted RBP18.6■□□□□ 0.57
RNF4-213ENST00000509388 GNAI2P04899 355 aa18.6■□□□□ 0.57
RNF4-213ENST00000509388 CCDC152Q4G0S7 254 aa18.6■□□□□ 0.57
RNF4-213ENST00000509388 ZNF622Q969S3 477 aaKnown RBP eCLIP18.6■□□□□ 0.57
RNF4-213ENST00000509388 SUCLG2Q96I99 432 aa18.6■□□□□ 0.57
RNF4-213ENST00000509388 PLA2G12BQ9BX93 195 aa18.6■□□□□ 0.57
RNF4-213ENST00000509388 CHMP3Q9Y3E7 222 aa18.6■□□□□ 0.57
RNF4-213ENST00000509388 CTSWP56202 376 aa18.59■□□□□ 0.57
RNF4-213ENST00000509388 MASTLQ96GX5 879 aa18.59■□□□□ 0.57
RNF4-213ENST00000509388 RBM17Q96I25 401 aaKnown RBP18.59■□□□□ 0.57
RNF4-213ENST00000509388 CCDC85AQ96PX6 553 aaPredicted RBP18.59■□□□□ 0.57
RNF4-213ENST00000509388 RIC1Q4ADV7 1423 aa18.58■□□□□ 0.57
RNF4-213ENST00000509388 A0A0G2JLW4 131 aa18.58■□□□□ 0.56
RNF4-213ENST00000509388 KLRG2A4D1S0 409 aaPredicted RBP18.58■□□□□ 0.56
RNF4-213ENST00000509388 NPR1P16066 1061 aa18.58■□□□□ 0.56
RNF4-213ENST00000509388 DPEP1P16444 411 aa18.58■□□□□ 0.56
RNF4-213ENST00000509388 CHRNA5P30532 468 aa18.58■□□□□ 0.56
RNF4-213ENST00000509388 SF3B3Q15393 1217 aaKnown RBP18.58■□□□□ 0.56
RNF4-213ENST00000509388 DDX46Q7L014 1031 aaKnown RBP18.58■□□□□ 0.56
RNF4-213ENST00000509388 SYT17Q9BSW7 474 aa18.58■□□□□ 0.56
RNF4-213ENST00000509388 LRRFIP2Q9Y608 721 aaKnown RBP18.58■□□□□ 0.56
RNF4-213ENST00000509388 AFDNP55196 1824 aaKnown RBP18.58■□□□□ 0.56
RNF4-213ENST00000509388 SRGNP10124 158 aa18.57■□□□□ 0.56
RNF4-213ENST00000509388 LMBR1LQ6UX01 489 aa18.57■□□□□ 0.56
RNF4-213ENST00000509388 C3orf67Q6ZVT6 689 aa18.57■□□□□ 0.56
RNF4-213ENST00000509388 CRBNQ96SW2 442 aa18.57■□□□□ 0.56
RNF4-213ENST00000509388 BICC1Q9H694 974 aaKnown RBP18.57■□□□□ 0.56
RNF4-213ENST00000509388 ALDH1B1P30837 517 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms