RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 SLC4A2P04920 1241 aa21.37■■□□□ 1.01
SNCA-209ENST00000506244 SRGNP10124 158 aa21.37■■□□□ 1.01
SNCA-209ENST00000506244 YY1P25490 414 aa21.37■■□□□ 1.01
SNCA-209ENST00000506244 SLFN5Q08AF3 891 aa21.37■■□□□ 1.01
SNCA-209ENST00000506244 CNKSR1Q969H4 720 aa21.37■■□□□ 1.01
SNCA-209ENST00000506244 ZNF622Q969S3 477 aaKnown RBP eCLIP21.37■■□□□ 1.01
SNCA-209ENST00000506244 NPR1P16066 1061 aa21.36■■□□□ 1.01
SNCA-209ENST00000506244 ERFEQ4G0M1 354 aa21.36■■□□□ 1.01
SNCA-209ENST00000506244 ISCA1Q9BUE6 129 aa21.36■■□□□ 1.01
SNCA-209ENST00000506244 TRMT112Q9UI30 125 aaKnown RBP21.36■■□□□ 1.01
SNCA-209ENST00000506244 SH3TC1Q8TE82 1336 aa21.35■■□□□ 1.01
SNCA-209ENST00000506244 TCERG1O14776 1098 aaKnown RBP21.35■■□□□ 1.01
SNCA-209ENST00000506244 FLIIQ13045 1269 aa21.35■■□□□ 1.01
SNCA-209ENST00000506244 TRIM28Q13263 835 aaKnown RBP21.35■■□□□ 1.01
SNCA-209ENST00000506244 KSR2Q6VAB6 950 aa21.35■■□□□ 1.01
SNCA-209ENST00000506244 NEXNQ0ZGT2 675 aa21.34■■□□□ 1.01
SNCA-209ENST00000506244 ZNF428Q96B54 188 aa21.34■■□□□ 1.01
SNCA-209ENST00000506244 HNRNPUQ00839 825 aaKnown RBP eCLIP21.33■■□□□ 1.01
SNCA-209ENST00000506244 CRY2Q49AN0 593 aa21.33■■□□□ 1.01
SNCA-209ENST00000506244 MYD88Q99836 296 aa21.33■■□□□ 1.01
SNCA-209ENST00000506244 METTL22Q9BUU2 404 aaPredicted RBP21.33■■□□□ 1.01
SNCA-209ENST00000506244 MAP3K2Q9Y2U5 619 aa21.33■■□□□ 1.01
SNCA-209ENST00000506244 PI4KAP2A4QPH2 592 aa21.32■■□□□ 1
SNCA-209ENST00000506244 ATP5J2-PTCD1G3V325 749 aa21.32■■□□□ 1
SNCA-209ENST00000506244 HSP90B1P14625 803 aaKnown RBP21.32■■□□□ 1
SNCA-209ENST00000506244 FKBP5Q13451 457 aaPredicted RBP21.32■■□□□ 1
SNCA-209ENST00000506244 SOGA3Q5TF21 947 aa21.32■■□□□ 1
SNCA-209ENST00000506244 ARHGAP27Q6ZUM4 889 aa21.32■■□□□ 1
SNCA-209ENST00000506244 PI4KAP1Q8N8J0 262 aa21.32■■□□□ 1
SNCA-209ENST00000506244 RPGRQ92834 1020 aaKnown RBP21.32■■□□□ 1
SNCA-209ENST00000506244 NLRP3Q96P20 1036 aa21.32■■□□□ 1
SNCA-209ENST00000506244 ADCY9O60503 1353 aa21.32■■□□□ 1
SNCA-209ENST00000506244 CACNA1SQ13698 1873 aa21.31■■□□□ 1
SNCA-209ENST00000506244 CT47B1P0C2W7 299 aaPredicted RBP21.31■■□□□ 1
SNCA-209ENST00000506244 ALDH1B1P30837 517 aa21.31■■□□□ 1
SNCA-209ENST00000506244 SLC10A5Q5PT55 438 aa21.31■■□□□ 1
SNCA-209ENST00000506244 PRPF40BQ6NWY9 871 aaKnown RBP21.31■■□□□ 1
SNCA-209ENST00000506244 CCDC191Q8NCU4 936 aa21.31■■□□□ 1
SNCA-209ENST00000506244 LAMB2P55268 1798 aa21.31■■□□□ 1
SNCA-209ENST00000506244 G2E3Q7L622 706 aa21.3■■□□□ 1
SNCA-209ENST00000506244 CDCA7LQ96GN5 454 aa21.3■■□□□ 1
SNCA-209ENST00000506244 CWC25Q9NXE8 425 aaPredicted RBP21.3■■□□□ 1
SNCA-209ENST00000506244 TRMT2AQ8IZ69 625 aaKnown RBP21.29■■□□□ 1
SNCA-209ENST00000506244 RBM17Q96I25 401 aaKnown RBP21.29■■□□□ 1
SNCA-209ENST00000506244 ZBTB38Q8NAP3 1195 aaPredicted RBP21.28■■□□□ 1
SNCA-209ENST00000506244 SLX4Q8IY92 1834 aa21.27■■□□□ 1
SNCA-209ENST00000506244 DDX60Q8IY21 1712 aaKnown RBP21.27■■□□□ 1
SNCA-209ENST00000506244 HOXA10P31260 410 aaPredicted RBP21.27■■□□□ 1
SNCA-209ENST00000506244 DNAAF4Q8WXU2 420 aa21.27■■□□□ 1
SNCA-209ENST00000506244 FAM89AQ96GI7 184 aa21.26■□□□□ 0.99
SNCA-209ENST00000506244 CRAMP1Q96RY5 1269 aa21.26■□□□□ 0.99
SNCA-209ENST00000506244 C21orf2O43822 256 aa21.25■□□□□ 0.99
SNCA-209ENST00000506244 PCCAP05165 728 aaPredicted RBP21.25■□□□□ 0.99
SNCA-209ENST00000506244 HCLS1P14317 486 aaPredicted RBP21.25■□□□□ 0.99
SNCA-209ENST00000506244 ALDH1L2Q3SY69 923 aa21.25■□□□□ 0.99
SNCA-209ENST00000506244 ZBED9Q6R2W3 1325 aa21.25■□□□□ 0.99
SNCA-209ENST00000506244 IRS4O14654 1257 aaPredicted RBP21.24■□□□□ 0.99
SNCA-209ENST00000506244 CCDC93Q567U6 631 aa21.24■□□□□ 0.99
SNCA-209ENST00000506244 NEURL1BA8MQ27 555 aa21.23■□□□□ 0.99
SNCA-209ENST00000506244 IGKV5-2P06315 115 aa21.23■□□□□ 0.99
SNCA-209ENST00000506244 C3orf67Q6ZVT6 689 aa21.23■□□□□ 0.99
SNCA-209ENST00000506244 DDX46Q7L014 1031 aaKnown RBP21.23■□□□□ 0.99
SNCA-209ENST00000506244 LINS1Q8NG48 757 aa21.23■□□□□ 0.99
SNCA-209ENST00000506244 ZNF219Q9P2Y4 722 aaPredicted RBP21.23■□□□□ 0.99
SNCA-209ENST00000506244 FER1L6Q2WGJ9 1857 aa21.23■□□□□ 0.99
SNCA-209ENST00000506244 PTPRCP08575 1304 aa21.23■□□□□ 0.99
SNCA-209ENST00000506244 RTL5Q5HYW3 569 aaPredicted RBP21.22■□□□□ 0.99
SNCA-209ENST00000506244 CC2D2BQ6DHV5 1058 aa21.22■□□□□ 0.99
SNCA-209ENST00000506244 SYNE4Q8N205 404 aa21.22■□□□□ 0.99
SNCA-209ENST00000506244 TMX4Q9H1E5 349 aaPredicted RBP21.22■□□□□ 0.99
SNCA-209ENST00000506244 TAOK3Q9H2K8 898 aa21.22■□□□□ 0.99
SNCA-209ENST00000506244 CDHR2Q9BYE9 1310 aa21.22■□□□□ 0.99
SNCA-209ENST00000506244 LTBP3Q9NS15 1303 aa21.22■□□□□ 0.99
SNCA-209ENST00000506244 PPEF1O14829 653 aaPredicted RBP21.21■□□□□ 0.99
SNCA-209ENST00000506244 LMNB1P20700 586 aa21.21■□□□□ 0.99
SNCA-209ENST00000506244 CWF19L2Q2TBE0 894 aaKnown RBP21.21■□□□□ 0.99
SNCA-209ENST00000506244 GRIPAP1Q4V328 841 aa21.21■□□□□ 0.99
SNCA-209ENST00000506244 MRPL50Q8N5N7 158 aaKnown RBP21.21■□□□□ 0.99
SNCA-209ENST00000506244 SSH1Q8WYL5 1049 aa21.21■□□□□ 0.99
SNCA-209ENST00000506244 SMC4Q9NTJ3 1288 aa21.21■□□□□ 0.99
SNCA-209ENST00000506244 ABCC4O15439 1325 aa21.21■□□□□ 0.99
SNCA-209ENST00000506244 NFKBIEO00221 500 aa21.2■□□□□ 0.98
SNCA-209ENST00000506244 RASSF7Q02833 373 aa21.2■□□□□ 0.98
SNCA-209ENST00000506244 SF3B3Q15393 1217 aaKnown RBP21.2■□□□□ 0.98
SNCA-209ENST00000506244 C9orf131Q5VYM1 1079 aa21.2■□□□□ 0.98
SNCA-209ENST00000506244 RTKN2Q8IZC4 609 aa21.2■□□□□ 0.98
SNCA-209ENST00000506244 C7orf43Q8WVR3 580 aa21.2■□□□□ 0.98
SNCA-209ENST00000506244 RNF181Q9P0P0 153 aa21.2■□□□□ 0.98
SNCA-209ENST00000506244 ZC3H4Q9UPT8 1303 aaKnown RBP21.2■□□□□ 0.98
SNCA-209ENST00000506244 PDE8AO60658 829 aa21.19■□□□□ 0.98
SNCA-209ENST00000506244 TMC4Q7Z404 712 aa21.19■□□□□ 0.98
SNCA-209ENST00000506244 SBF1O95248 1867 aa21.19■□□□□ 0.98
SNCA-209ENST00000506244 F6X3S4 739 aa21.18■□□□□ 0.98
SNCA-209ENST00000506244 BBOX1O75936 387 aa21.18■□□□□ 0.98
SNCA-209ENST00000506244 GRAPQ13588 217 aa21.18■□□□□ 0.98
SNCA-209ENST00000506244 GCKRQ14397 625 aa21.18■□□□□ 0.98
SNCA-209ENST00000506244 CCDC152Q4G0S7 254 aa21.18■□□□□ 0.98
SNCA-209ENST00000506244 ZNF784Q8NCA9 323 aaPredicted RBP21.18■□□□□ 0.98
SNCA-209ENST00000506244 GRAPLQ8TC17 118 aaPredicted RBP21.18■□□□□ 0.98
SNCA-209ENST00000506244 BCL2L13Q9BXK5 485 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms