RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 USPL1Q5W0Q7 1092 aa6.69□□□□□ -1.34
NIPBL-204ENST00000504430 ZKSCAN2Q63HK3 967 aa6.69□□□□□ -1.34
NIPBL-204ENST00000504430 POTEHQ6S545 545 aa6.69□□□□□ -1.34
NIPBL-204ENST00000504430 NGDNQ8NEJ9 315 aaKnown RBP6.69□□□□□ -1.34
NIPBL-204ENST00000504430 ATL2Q8NHH9 583 aa6.69□□□□□ -1.34
NIPBL-204ENST00000504430 AVENQ9NQS1 362 aaPredicted RBP6.69□□□□□ -1.34
NIPBL-204ENST00000504430 ENAMQ9NRM1 1142 aa6.69□□□□□ -1.34
NIPBL-204ENST00000504430 FGAP02671 866 aa6.68□□□□□ -1.34
NIPBL-204ENST00000504430 SIM2Q14190 667 aaPredicted RBP6.68□□□□□ -1.34
NIPBL-204ENST00000504430 ESPNB1AK53 854 aa6.68□□□□□ -1.34
NIPBL-204ENST00000504430 SEPT6Q14141 434 aa6.68□□□□□ -1.34
NIPBL-204ENST00000504430 LONRF1Q17RB8 773 aa6.68□□□□□ -1.34
NIPBL-204ENST00000504430 BRDTQ58F21 947 aaPredicted RBP6.68□□□□□ -1.34
NIPBL-204ENST00000504430 C16orf46Q6P387 395 aa6.68□□□□□ -1.34
NIPBL-204ENST00000504430 LRRC27Q9C0I9 530 aa6.68□□□□□ -1.34
NIPBL-204ENST00000504430 LHX6Q9UPM6 363 aa6.68□□□□□ -1.34
NIPBL-204ENST00000504430 POTEFA5A3E0 1075 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 LDHCP07864 332 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 MASP1P48740 699 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 CLCN6P51797 869 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 SQSTM1Q13501 440 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 PCDHB11Q9Y5F2 797 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 AK5Q9Y6K8 562 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 CLSPNQ9HAW4 1339 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 SEC24BO95487 1268 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 FOSP01100 380 aaPredicted RBP6.67□□□□□ -1.34
NIPBL-204ENST00000504430 VIL1P09327 827 aaKnown RBP6.67□□□□□ -1.34
NIPBL-204ENST00000504430 RRM1P23921 792 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 CXorf38Q8TB03 319 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 AS3MTQ9HBK9 375 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 ARNT2Q9HBZ2 717 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 ZNF358Q9NW07 568 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 LIG1P18858 919 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 POU3F3P20264 500 aaPredicted RBP6.67□□□□□ -1.34
NIPBL-204ENST00000504430 MORN1Q5T089 497 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 SAMD7Q7Z3H4 446 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 EPS8L3Q8TE67 593 aaKnown RBP6.67□□□□□ -1.34
NIPBL-204ENST00000504430 ARHGAP9Q9BRR9 750 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 SERTAD1Q9UHV2 236 aa6.67□□□□□ -1.34
NIPBL-204ENST00000504430 MINDY4BA8MYZ0 360 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 SOGA3Q5TF21 947 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 PDILTQ8N807 584 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 DMRTB1Q96MA1 342 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 APBA2Q99767 749 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 IFRD1O00458 451 aaPredicted RBP6.66□□□□□ -1.34
NIPBL-204ENST00000504430 SH3PXD2AQ5TCZ1 1133 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 ZBTB33Q86T24 672 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 DZIP3Q86Y13 1208 aaKnown RBP6.66□□□□□ -1.34
NIPBL-204ENST00000504430 CENPOQ9BU64 300 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 PRDM9Q9NQV7 894 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 CNTN3Q9P232 1028 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 PDZRN3Q9UPQ7 1066 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 PRSS47A8MTI9 375 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 EIF1AYO14602 144 aaKnown RBP6.66□□□□□ -1.34
NIPBL-204ENST00000504430 PPP1R12AO14974 1030 aaPredicted RBP6.66□□□□□ -1.34
NIPBL-204ENST00000504430 PTK2Q05397 1052 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 DESI1Q6ICB0 168 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 HOMER2Q9NSB8 354 aa6.66□□□□□ -1.34
NIPBL-204ENST00000504430 TMEM229AB2RXF0 380 aa6.65□□□□□ -1.34
NIPBL-204ENST00000504430 KLF4O43474 513 aa6.65□□□□□ -1.34
NIPBL-204ENST00000504430 RAB33AQ14088 237 aa6.65□□□□□ -1.34
NIPBL-204ENST00000504430 PPP4R4Q6NUP7 873 aa6.65□□□□□ -1.34
NIPBL-204ENST00000504430 GINM1Q9NU53 330 aa6.65□□□□□ -1.34
NIPBL-204ENST00000504430 PRPF3O43395 683 aaKnown RBP6.65□□□□□ -1.35
NIPBL-204ENST00000504430 SCGB1D2O95969 90 aa6.65□□□□□ -1.35
NIPBL-204ENST00000504430 FAM169BQ8N8A8 192 aa6.65□□□□□ -1.35
NIPBL-204ENST00000504430 STIM2Q9P246 746 aa6.65□□□□□ -1.35
NIPBL-204ENST00000504430 CD2APQ9Y5K6 639 aa6.65□□□□□ -1.35
NIPBL-204ENST00000504430 TSPAN6O43657 245 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 TRIM37O94972 964 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 CNGA1P29973 690 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 DEKP35659 375 aaKnown RBP6.64□□□□□ -1.35
NIPBL-204ENST00000504430 ICE2Q659A1 982 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 NGLY1Q96IV0 654 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 SHTN1A0MZ66 631 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 C8orf34Q49A92 452 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 SKAP1Q86WV1 359 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 ETFBKMTQ8IXQ9 262 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 IPO4Q8TEX9 1081 aaKnown RBP6.64□□□□□ -1.35
NIPBL-204ENST00000504430 SMAD5Q99717 465 aaKnown RBP6.64□□□□□ -1.35
NIPBL-204ENST00000504430 USB1Q9BQ65 265 aaKnown RBP6.64□□□□□ -1.35
NIPBL-204ENST00000504430 SPON2Q9BUD6 331 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 MUC3BQ9H195 1237 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 PFDN2Q9UHV9 154 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 SRGNP10124 158 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 NFE2Q16621 373 aaPredicted RBP6.64□□□□□ -1.35
NIPBL-204ENST00000504430 CCDC96Q2M329 555 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 CEP63Q96MT8 703 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 KCNK17Q96T54 332 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 ADAMTS1Q9UHI8 967 aa6.64□□□□□ -1.35
NIPBL-204ENST00000504430 ATAD2Q6PL18 1390 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 ALDH1L1O75891 902 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 SLKQ9H2G2 1235 aaPredicted RBP6.63□□□□□ -1.35
NIPBL-204ENST00000504430 BCL2L12Q9HB09 334 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 FBXO24O75426 580 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 CDC27P30260 824 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 ALG1LQ6GMV1 187 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 EDEM1Q92611 657 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 PTPREP23469 700 aa6.63□□□□□ -1.35
NIPBL-204ENST00000504430 TTF1Q15361 905 aaPredicted RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms