RNA–Protein interactions for RNA: ENST00000502948.1

LSM3P4-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 4, humanhuman

BASIC

Gene LSM3P4, Length 309 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P4-201ENST00000502948 RASSF10A6NK89 507 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 NTSR2O95665 410 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 EPHX2P34913 555 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 LMOD3Q0VAK6 560 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 HSP90AB3PQ58FF7 597 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 SYNE4Q8N205 404 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 RBM17Q96I25 401 aaKnown RBP8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 RTFDC1Q9BY42 306 aaPredicted RBP8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 PRDM10Q9NQV6 1147 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 ZNF219Q9P2Y4 722 aaPredicted RBP8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 LRRC37AA6NMS7 1700 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 LTBP1Q14766 1721 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 ABCC12Q96J65 1359 aa8.05□□□□□ -1.12
LSM3P4-201ENST00000502948 CDHR2Q9BYE9 1310 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 ZNF541Q9H0D2 1346 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 HOXB7P09629 217 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 POTEIP0CG38 1075 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 POTEJP0CG39 1038 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 EIF6P56537 245 aaKnown RBP8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 PDIA6Q15084 440 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 TTLL7Q6ZT98 887 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 USP50Q70EL3 339 aaPredicted RBP8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 TMC4Q7Z404 712 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 TNS4Q8IZW8 715 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 RPGRQ92834 1020 aaKnown RBP8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 NLRP3Q96P20 1036 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 ZNF277Q9NRM2 450 aaPredicted RBP8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 MIS18AQ9NYP9 233 aa8.04□□□□□ -1.12
LSM3P4-201ENST00000502948 COL4A5P29400 1685 aa8.03□□□□□ -1.12
LSM3P4-201ENST00000502948 BBOX1O75936 387 aa8.03□□□□□ -1.12
LSM3P4-201ENST00000502948 SUSD4Q5VX71 490 aa8.03□□□□□ -1.12
LSM3P4-201ENST00000502948 CNTROBQ8N137 903 aa8.03□□□□□ -1.12
LSM3P4-201ENST00000502948 SUPT20HQ8NEM7 779 aa8.03□□□□□ -1.12
LSM3P4-201ENST00000502948 ATP6V0A2Q9Y487 856 aa8.03□□□□□ -1.12
LSM3P4-201ENST00000502948 PPEF1O14829 653 aaPredicted RBP8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 LMOD1P29536 600 aaPredicted RBP8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 SCNN1DP51172 638 aa8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 CNGB1Q14028 1251 aaPredicted RBP8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 NUTM1Q86Y26 1132 aa8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 SP8Q8IXZ3 490 aa8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 HHIPL1Q96JK4 782 aa8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 UTP14AQ9BVJ6 771 aaKnown RBP8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 TMX4Q9H1E5 349 aaPredicted RBP8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 WBP1LQ9NX94 342 aa8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 PGAP2Q9UHJ9 254 aa8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 TSPYL4Q9UJ04 414 aa8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 RRP7AQ9Y3A4 280 aaKnown RBP8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 DDX60Q8IY21 1712 aaKnown RBP8.02□□□□□ -1.13
LSM3P4-201ENST00000502948 CHL1O00533 1208 aa8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 MYL6BP14649 208 aa8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 TMPOP42166 694 aaKnown RBP8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 CTCFP49711 727 aaPredicted RBP8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 RIPK4P57078 832 aa8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 MAP2K1Q02750 393 aaPredicted RBP8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 TCIRG1Q13488 830 aa8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 DEFB115Q30KQ5 88 aa8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 OLFM4Q6UX06 510 aa8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 ZC3H15Q8WU90 426 aaKnown RBP8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 ZBTB3Q9H5J0 574 aa8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 DDX21Q9NR30 783 aaKnown RBP eCLIP8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 MKRN1Q9UHC7 482 aaKnown RBP8.01□□□□□ -1.13
LSM3P4-201ENST00000502948 FAM177BA6PVY3 158 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 GPTP24298 496 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 VEGFBP49765 207 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 KIAA2012Q0VF49 1180 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 TRIM28Q13263 835 aaKnown RBP8□□□□□ -1.13
LSM3P4-201ENST00000502948 EAPPQ56P03 285 aaPredicted RBP8□□□□□ -1.13
LSM3P4-201ENST00000502948 NLRP10Q86W26 655 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 NIM1KQ8IY84 436 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 LARGE2Q8N3Y3 721 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 GPRC5DQ9NZD1 345 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 ZNRF3Q9ULT6 936 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 ABCC4O15439 1325 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 SH3TC1Q8TE82 1336 aa8□□□□□ -1.13
LSM3P4-201ENST00000502948 MYBBP1AQ9BQG0 1328 aaKnown RBP8□□□□□ -1.13
LSM3P4-201ENST00000502948 ZNF609O15014 1411 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 FOXN1O15353 648 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 MAP2K2P36507 400 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 ECE1P42892 770 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 SF3B3Q15393 1217 aaKnown RBP7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 MAP1SQ66K74 1059 aaPredicted RBP7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 COPS6Q7L5N1 327 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 NGEFQ8N5V2 710 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 PLBD2Q8NHP8 589 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 AIDAQ96BJ3 306 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 THUMPD2Q9BTF0 503 aaKnown RBP7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 CHMP4AQ9BY43 222 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 DUOX1Q9NRD9 1551 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 ADARB2Q9NS39 739 aaKnown RBP7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 DBF4Q9UBU7 674 aaPredicted RBP7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 CLEC11AQ9Y240 323 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 WDR33Q9C0J8 1336 aaKnown RBP7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 PSME4Q14997 1843 aa7.99□□□□□ -1.13
LSM3P4-201ENST00000502948 PPIP5K2O43314 1243 aa7.98□□□□□ -1.13
LSM3P4-201ENST00000502948 HSP90B1P14625 803 aaKnown RBP7.98□□□□□ -1.13
LSM3P4-201ENST00000502948 EPS15P42566 896 aa7.98□□□□□ -1.13
LSM3P4-201ENST00000502948 CXCL9Q07325 125 aa7.98□□□□□ -1.13
LSM3P4-201ENST00000502948 GRAPQ13588 217 aa7.98□□□□□ -1.13
LSM3P4-201ENST00000502948 TNIP1Q15025 636 aa7.98□□□□□ -1.13
LSM3P4-201ENST00000502948 C3orf67Q6ZVT6 689 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms