RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 FAM227BQ96M60 508 aa11.87□□□□□ -0.51
CLIP1-204ENST00000501271 MYD88Q99836 296 aa11.87□□□□□ -0.51
CLIP1-204ENST00000501271 CCDC171Q6TFL3 1326 aa11.87□□□□□ -0.51
CLIP1-204ENST00000501271 GADD45BO75293 160 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-204ENST00000501271 LRP10Q7Z4F1 713 aa11.87□□□□□ -0.51
CLIP1-204ENST00000501271 JAKMIP1Q96N16 626 aaKnown RBP11.87□□□□□ -0.51
CLIP1-204ENST00000501271 TMEM94Q12767 1356 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 NEXNQ0ZGT2 675 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 NMIQ13287 307 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-204ENST00000501271 NECTIN1Q15223 517 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 CHRNA2Q15822 529 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 IFNL2Q8IZJ0 200 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 KCNB2Q92953 911 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 METTL22Q9BUU2 404 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-204ENST00000501271 USP16Q9Y5T5 823 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 LAMB4A4D0S4 1761 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 CYP27B1O15528 508 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 ATF3P18847 181 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 USP48Q86UV5 1035 aa11.86□□□□□ -0.51
CLIP1-204ENST00000501271 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.86□□□□□ -0.513e-9■■■■□ 19.5
CLIP1-204ENST00000501271 DTNBO60941 627 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 CSB-PGBD3P0DP91 1061 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 SYT1P21579 422 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 DDX54Q8TDD1 881 aaKnown RBP11.85□□□□□ -0.51
CLIP1-204ENST00000501271 JARID2Q92833 1246 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-204ENST00000501271 BOLA2Q9H3K6 86 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 ZSWIM6Q9HCJ5 1215 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 RBM8AQ9Y5S9 174 aaKnown RBP11.85□□□□□ -0.51
CLIP1-204ENST00000501271 A0A0D9SFI3 127 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 ZSCAN22P10073 491 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-204ENST00000501271 VPS53Q5VIR6 699 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 PDLIM2Q96JY6 352 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 TM6SF1Q9BZW5 370 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 PDRG1Q9NUG6 133 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-204ENST00000501271 TNS3Q68CZ2 1445 aa11.85□□□□□ -0.51
CLIP1-204ENST00000501271 PARP4Q9UKK3 1724 aaKnown RBP11.84□□□□□ -0.51
CLIP1-204ENST00000501271 STX6O43752 255 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 SNRPA1P09661 255 aaKnown RBP11.84□□□□□ -0.51
CLIP1-204ENST00000501271 ST3GAL1Q11201 340 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 COL9A3Q14050 684 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-204ENST00000501271 CREB3L3Q68CJ9 461 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 ANKRD13DQ6ZTN6 518 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 CCDC83Q8IWF9 413 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 DCAF5Q96JK2 942 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 SMC3Q9UQE7 1217 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 CNPY2Q9Y2B0 182 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 CYP46A1Q9Y6A2 500 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 DCCP43146 1447 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 TTC5Q8N0Z6 440 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 TMEM87AQ8NBN3 555 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 MAP4K1Q92918 833 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 FSD1Q9BTV5 496 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 SNRKQ9NRH2 765 aa11.84□□□□□ -0.51
CLIP1-204ENST00000501271 MED23Q9ULK4 1368 aa11.83□□□□□ -0.52
CLIP1-204ENST00000501271 HIP1O00291 1037 aa11.83□□□□□ -0.52
CLIP1-204ENST00000501271 RFX5P48382 616 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-204ENST00000501271 F13A1P00488 732 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 GJB2P29033 226 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 ZSCAN30Q86W11 494 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 EDC3Q96F86 508 aaKnown RBP11.82□□□□□ -0.52
CLIP1-204ENST00000501271 NAP1L5Q96NT1 182 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-204ENST00000501271 FMNL2Q96PY5 1086 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 SLC27A2O14975 620 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 ZKSCAN1P17029 563 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-204ENST00000501271 KCNJ4P48050 445 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 PTPN12Q05209 780 aaKnown RBP11.82□□□□□ -0.52
CLIP1-204ENST00000501271 ME3Q16798 604 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 UBE3BQ7Z3V4 1068 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 ZNF589Q86UQ0 364 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-204ENST00000501271 RNF214Q8ND24 703 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 SYAP1Q96A49 352 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-204ENST00000501271 COPRSQ9NQ92 184 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 TAF6LQ9Y6J9 622 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 PLEKHG2Q9H7P9 1386 aa11.82□□□□□ -0.52
CLIP1-204ENST00000501271 ATP5J2-PTCD1G3V325 749 aa11.81□□□□□ -0.52
CLIP1-204ENST00000501271 PTCD1O75127 700 aaKnown RBP11.81□□□□□ -0.52
CLIP1-204ENST00000501271 SH2B1Q9NRF2 756 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-204ENST00000501271 DBNLQ9UJU6 430 aaKnown RBP11.81□□□□□ -0.52
CLIP1-204ENST00000501271 JCADQ9P266 1359 aa11.81□□□□□ -0.52
CLIP1-204ENST00000501271 RABL6Q3YEC7 729 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-204ENST00000501271 NECAB1Q8N987 351 aa11.81□□□□□ -0.52
CLIP1-204ENST00000501271 ZSCAN31Q96LW9 406 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-204ENST00000501271 TSPY26PQ9H489 355 aa11.81□□□□□ -0.52
CLIP1-204ENST00000501271 TPCN1Q9ULQ1 816 aa11.81□□□□□ -0.52
CLIP1-204ENST00000501271 NUP188Q5SRE5 1749 aa11.81□□□□□ -0.52
CLIP1-204ENST00000501271 TFCP2Q12800 502 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 TNNI3KQ59H18 835 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 MTMR6Q9Y217 621 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 FPGT-TNNI3KV9GXZ4 949 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 TJP1Q07157 1748 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 UBR2Q8IWV8 1755 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 FIBPO43427 364 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 COL15A1P39059 1388 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 CABP4P57796 275 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 SPATA31A3Q5VYP0 1347 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 TCEANC2Q96MN5 208 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 NDUFB9Q9Y6M9 179 aa11.8□□□□□ -0.52
CLIP1-204ENST00000501271 CPDO75976 1380 aa11.79□□□□□ -0.52
CLIP1-204ENST00000501271 A0A087WZG4 1122 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms