RNA–Protein interactions for RNA: ENST00000498548.1

NR1H3-227, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 3

Gene NR1H3, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-227ENST00000498548 SYNE4Q8N205 404 aa20.9■□□□□ 0.94
NR1H3-227ENST00000498548 TAOK3Q9H2K8 898 aa20.9■□□□□ 0.94
NR1H3-227ENST00000498548 DICER1Q9UPY3 1922 aaKnown RBP20.9■□□□□ 0.94
NR1H3-227ENST00000498548 IBTKQ9P2D0 1353 aaPredicted RBP20.89■□□□□ 0.93
NR1H3-227ENST00000498548 ALDH1B1P30837 517 aa20.89■□□□□ 0.93
NR1H3-227ENST00000498548 CRY2Q49AN0 593 aa20.89■□□□□ 0.93
NR1H3-227ENST00000498548 CCDC93Q567U6 631 aa20.89■□□□□ 0.93
NR1H3-227ENST00000498548 HSP90AB3PQ58FF7 597 aa20.89■□□□□ 0.93
NR1H3-227ENST00000498548 NLRP10Q86W26 655 aa20.89■□□□□ 0.93
NR1H3-227ENST00000498548 TSR2Q969E8 191 aaKnown RBP20.89■□□□□ 0.93
NR1H3-227ENST00000498548 TCERG1O14776 1098 aaKnown RBP20.88■□□□□ 0.93
NR1H3-227ENST00000498548 SOGA3Q5TF21 947 aa20.88■□□□□ 0.93
NR1H3-227ENST00000498548 ANKRD13DQ6ZTN6 518 aa20.88■□□□□ 0.93
NR1H3-227ENST00000498548 SLC51AQ86UW1 340 aa20.88■□□□□ 0.93
NR1H3-227ENST00000498548 WWC1Q8IX03 1113 aa20.88■□□□□ 0.93
NR1H3-227ENST00000498548 TSPYL6Q8N831 410 aa20.88■□□□□ 0.93
NR1H3-227ENST00000498548 RPGRQ92834 1020 aaKnown RBP20.88■□□□□ 0.93
NR1H3-227ENST00000498548 PHAXQ9H814 394 aaKnown RBP20.88■□□□□ 0.93
NR1H3-227ENST00000498548 LTBP3Q9NS15 1303 aa20.87■□□□□ 0.93
NR1H3-227ENST00000498548 GLTPD2A6NH11 291 aa20.87■□□□□ 0.93
NR1H3-227ENST00000498548 PLBD2Q8NHP8 589 aa20.87■□□□□ 0.93
NR1H3-227ENST00000498548 HYPKQ9NX55 129 aa20.87■□□□□ 0.93
NR1H3-227ENST00000498548 ATP5J2-PTCD1G3V325 749 aa20.86■□□□□ 0.93
NR1H3-227ENST00000498548 TOMM70O94826 608 aa20.86■□□□□ 0.93
NR1H3-227ENST00000498548 HCLS1P14317 486 aaPredicted RBP20.86■□□□□ 0.93
NR1H3-227ENST00000498548 C16orf71Q8IYS4 520 aaPredicted RBP20.86■□□□□ 0.93
NR1H3-227ENST00000498548 FAM9BQ8IZU0 186 aa20.86■□□□□ 0.93
NR1H3-227ENST00000498548 RBM17Q96I25 401 aaKnown RBP20.86■□□□□ 0.93
NR1H3-227ENST00000498548 NLRP3Q96P20 1036 aa20.86■□□□□ 0.93
NR1H3-227ENST00000498548 ZNF277Q9NRM2 450 aaPredicted RBP20.86■□□□□ 0.93
NR1H3-227ENST00000498548 TRMT112Q9UI30 125 aaKnown RBP20.86■□□□□ 0.93
NR1H3-227ENST00000498548 ZC3H4Q9UPT8 1303 aaKnown RBP20.85■□□□□ 0.93
NR1H3-227ENST00000498548 CCDC27Q2M243 656 aa20.85■□□□□ 0.93
NR1H3-227ENST00000498548 SLC10A5Q5PT55 438 aa20.85■□□□□ 0.93
NR1H3-227ENST00000498548 HOXA10P31260 410 aaPredicted RBP20.84■□□□□ 0.93
NR1H3-227ENST00000498548 FKBP4Q02790 459 aaKnown RBP eCLIP20.84■□□□□ 0.93
NR1H3-227ENST00000498548 RIC1Q4ADV7 1423 aa20.84■□□□□ 0.93
NR1H3-227ENST00000498548 LAMB2P55268 1798 aa20.83■□□□□ 0.93
NR1H3-227ENST00000498548 HSPA6P17066 643 aa20.83■□□□□ 0.93
NR1H3-227ENST00000498548 RIC3Q7Z5B4 369 aa20.83■□□□□ 0.93
NR1H3-227ENST00000498548 CRAMP1Q96RY5 1269 aa20.83■□□□□ 0.93
NR1H3-227ENST00000498548 ISCA1Q9BUE6 129 aa20.83■□□□□ 0.93
NR1H3-227ENST00000498548 RTL5Q5HYW3 569 aaPredicted RBP20.82■□□□□ 0.92
NR1H3-227ENST00000498548 DPY19L2Q6NUT2 758 aa20.82■□□□□ 0.92
NR1H3-227ENST00000498548 RTKN2Q8IZC4 609 aa20.82■□□□□ 0.92
NR1H3-227ENST00000498548 PPEF1O14829 653 aaPredicted RBP20.81■□□□□ 0.92
NR1H3-227ENST00000498548 DDNO94850 711 aaPredicted RBP20.81■□□□□ 0.92
NR1H3-227ENST00000498548 CCDC30Q5VVM6 783 aa20.81■□□□□ 0.92
NR1H3-227ENST00000498548 FAM89AQ96GI7 184 aa20.81■□□□□ 0.92
NR1H3-227ENST00000498548 TAF1P21675 1872 aa20.81■□□□□ 0.92
NR1H3-227ENST00000498548 SH3TC1Q8TE82 1336 aa20.8■□□□□ 0.92
NR1H3-227ENST00000498548 POTECB2RU33 542 aa20.8■□□□□ 0.92
NR1H3-227ENST00000498548 GOLGA2Q08379 1002 aa20.8■□□□□ 0.92
NR1H3-227ENST00000498548 RBM46Q8TBY0 533 aaKnown RBP20.8■□□□□ 0.92
NR1H3-227ENST00000498548 VEGFAP15692 232 aaPredicted RBP20.79■□□□□ 0.92
NR1H3-227ENST00000498548 MYD88Q99836 296 aa20.79■□□□□ 0.92
NR1H3-227ENST00000498548 ABCC4O15439 1325 aa20.78■□□□□ 0.92
NR1H3-227ENST00000498548 RNF123Q5XPI4 1314 aa20.78■□□□□ 0.92
NR1H3-227ENST00000498548 IARSP41252 1262 aaKnown RBP20.78■□□□□ 0.92
NR1H3-227ENST00000498548 TWISTNBQ3B726 338 aaPredicted RBP20.78■□□□□ 0.92
NR1H3-227ENST00000498548 DDX60Q8IY21 1712 aaKnown RBP20.78■□□□□ 0.92
NR1H3-227ENST00000498548 SNED1Q8TER0 1413 aa20.78■□□□□ 0.92
NR1H3-227ENST00000498548 JARID2Q92833 1246 aaPredicted RBP20.77■□□□□ 0.92
NR1H3-227ENST00000498548 IL16Q14005 1332 aa20.77■□□□□ 0.91
NR1H3-227ENST00000498548 WDR90Q96KV7 1748 aa20.76■□□□□ 0.91
NR1H3-227ENST00000498548 NCBP3Q53F19 620 aaKnown RBP20.76■□□□□ 0.91
NR1H3-227ENST00000498548 CC2D2BQ6DHV5 1058 aa20.76■□□□□ 0.91
NR1H3-227ENST00000498548 ZNF541Q9H0D2 1346 aa20.76■□□□□ 0.91
NR1H3-227ENST00000498548 TRIM28Q13263 835 aaKnown RBP20.75■□□□□ 0.91
NR1H3-227ENST00000498548 DDX46Q7L014 1031 aaKnown RBP20.75■□□□□ 0.91
NR1H3-227ENST00000498548 G2E3Q7L622 706 aa20.75■□□□□ 0.91
NR1H3-227ENST00000498548 WDR63Q8IWG1 891 aa20.75■□□□□ 0.91
NR1H3-227ENST00000498548 PSMD1Q99460 953 aa20.75■□□□□ 0.91
NR1H3-227ENST00000498548 SPINK5Q9NQ38 1064 aaPredicted RBP20.75■□□□□ 0.91
NR1H3-227ENST00000498548 FANCIQ9NVI1 1328 aa20.75■□□□□ 0.91
NR1H3-227ENST00000498548 MAP3K2Q9Y2U5 619 aa20.74■□□□□ 0.91
NR1H3-227ENST00000498548 ATP6V0A2Q9Y487 856 aa20.74■□□□□ 0.91
NR1H3-227ENST00000498548 IRS4O14654 1257 aaPredicted RBP20.73■□□□□ 0.91
NR1H3-227ENST00000498548 DDX58O95786 925 aaKnown RBP20.73■□□□□ 0.91
NR1H3-227ENST00000498548 FSTL1Q12841 308 aa20.73■□□□□ 0.91
NR1H3-227ENST00000498548 METTL22Q9BUU2 404 aaPredicted RBP20.73■□□□□ 0.91
NR1H3-227ENST00000498548 STK31Q9BXU1 1019 aa20.73■□□□□ 0.91
NR1H3-227ENST00000498548 COL4A5P29400 1685 aa20.73■□□□□ 0.91
NR1H3-227ENST00000498548 PI4KAP2A4QPH2 592 aa20.72■□□□□ 0.91
NR1H3-227ENST00000498548 BBOX1O75936 387 aa20.72■□□□□ 0.91
NR1H3-227ENST00000498548 SLC4A2P04920 1241 aa20.72■□□□□ 0.91
NR1H3-227ENST00000498548 HTRA3P83110 453 aa20.72■□□□□ 0.91
NR1H3-227ENST00000498548 EXOSC9Q06265 439 aaKnown RBP20.72■□□□□ 0.91
NR1H3-227ENST00000498548 GRAPQ13588 217 aa20.72■□□□□ 0.91
NR1H3-227ENST00000498548 PI4KAP1Q8N8J0 262 aa20.72■□□□□ 0.91
NR1H3-227ENST00000498548 GRAPLQ8TC17 118 aaPredicted RBP20.72■□□□□ 0.91
NR1H3-227ENST00000498548 CHMP4AQ9BY43 222 aa20.72■□□□□ 0.91
NR1H3-227ENST00000498548 TMX4Q9H1E5 349 aaPredicted RBP20.72■□□□□ 0.91
NR1H3-227ENST00000498548 FZD9O00144 591 aa20.71■□□□□ 0.91
NR1H3-227ENST00000498548 KSR2Q6VAB6 950 aa20.71■□□□□ 0.91
NR1H3-227ENST00000498548 SP8Q8IXZ3 490 aa20.71■□□□□ 0.91
NR1H3-227ENST00000498548 LARGE2Q8N3Y3 721 aa20.71■□□□□ 0.91
NR1H3-227ENST00000498548 ZBTB38Q8NAP3 1195 aaPredicted RBP20.71■□□□□ 0.91
NR1H3-227ENST00000498548 SMC1BQ8NDV3 1235 aa20.71■□□□□ 0.91
NR1H3-227ENST00000498548 VAMP4O75379 141 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms