RNA–Protein interactions for RNA: ENST00000498495.1

HSPG2-213, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 488 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-213ENST00000498495 ZNF219Q9P2Y4 722 aaPredicted RBP16.43■□□□□ 0.22
HSPG2-213ENST00000498495 BRCA1P38398 1863 aaKnown RBP16.43■□□□□ 0.22
HSPG2-213ENST00000498495 ANKRD31Q8N7Z5 1873 aa16.43■□□□□ 0.22
HSPG2-213ENST00000498495 C21orf2O43822 256 aa16.42■□□□□ 0.22
HSPG2-213ENST00000498495 ZNF784Q8NCA9 323 aaPredicted RBP16.42■□□□□ 0.22
HSPG2-213ENST00000498495 E9PSI1 815 aa16.41■□□□□ 0.22
HSPG2-213ENST00000498495 TRIM28Q13263 835 aaKnown RBP16.41■□□□□ 0.22
HSPG2-213ENST00000498495 PRPF40BQ6NWY9 871 aaKnown RBP16.41■□□□□ 0.22
HSPG2-213ENST00000498495 KSR2Q6VAB6 950 aa16.41■□□□□ 0.22
HSPG2-213ENST00000498495 RPGRQ92834 1020 aaKnown RBP16.41■□□□□ 0.22
HSPG2-213ENST00000498495 ZNF428Q96B54 188 aa16.41■□□□□ 0.22
HSPG2-213ENST00000498495 MYD88Q99836 296 aa16.41■□□□□ 0.22
HSPG2-213ENST00000498495 MAP3K2Q9Y2U5 619 aa16.41■□□□□ 0.22
HSPG2-213ENST00000498495 RNF123Q5XPI4 1314 aa16.41■□□□□ 0.22
HSPG2-213ENST00000498495 SH3TC1Q8TE82 1336 aa16.41■□□□□ 0.22
HSPG2-213ENST00000498495 ABCC12Q96J65 1359 aa16.4■□□□□ 0.22
HSPG2-213ENST00000498495 PI4KAP2A4QPH2 592 aa16.4■□□□□ 0.22
HSPG2-213ENST00000498495 G2E3Q7L622 706 aa16.4■□□□□ 0.22
HSPG2-213ENST00000498495 PI4KAP1Q8N8J0 262 aa16.4■□□□□ 0.22
HSPG2-213ENST00000498495 METTL22Q9BUU2 404 aaPredicted RBP16.4■□□□□ 0.22
HSPG2-213ENST00000498495 ARFGEF1Q9Y6D6 1849 aa16.4■□□□□ 0.22
HSPG2-213ENST00000498495 UTRNP46939 3433 aa16.39■□□□□ 0.22
HSPG2-213ENST00000498495 SLFN5Q08AF3 891 aa16.39■□□□□ 0.21
HSPG2-213ENST00000498495 CRY2Q49AN0 593 aa16.39■□□□□ 0.21
HSPG2-213ENST00000498495 SYNE4Q8N205 404 aa16.39■□□□□ 0.21
HSPG2-213ENST00000498495 RBM17Q96I25 401 aaKnown RBP16.39■□□□□ 0.21
HSPG2-213ENST00000498495 DLEC1Q9Y238 1755 aa16.38■□□□□ 0.21
HSPG2-213ENST00000498495 HCLS1P14317 486 aaPredicted RBP16.38■□□□□ 0.21
HSPG2-213ENST00000498495 NEXNQ0ZGT2 675 aa16.38■□□□□ 0.21
HSPG2-213ENST00000498495 FLIIQ13045 1269 aa16.38■□□□□ 0.21
HSPG2-213ENST00000498495 SOGA3Q5TF21 947 aa16.38■□□□□ 0.21
HSPG2-213ENST00000498495 C9orf131Q5VYM1 1079 aa16.38■□□□□ 0.21
HSPG2-213ENST00000498495 FAM89AQ96GI7 184 aa16.38■□□□□ 0.21
HSPG2-213ENST00000498495 GOLGB1Q14789 3259 aaKnown RBP16.37■□□□□ 0.21
HSPG2-213ENST00000498495 HOXA10P31260 410 aaPredicted RBP16.37■□□□□ 0.21
HSPG2-213ENST00000498495 FKBP5Q13451 457 aaPredicted RBP16.37■□□□□ 0.21
HSPG2-213ENST00000498495 RTL5Q5HYW3 569 aaPredicted RBP16.37■□□□□ 0.21
HSPG2-213ENST00000498495 CCDC191Q8NCU4 936 aa16.37■□□□□ 0.21
HSPG2-213ENST00000498495 CDCA7LQ96GN5 454 aa16.37■□□□□ 0.21
HSPG2-213ENST00000498495 RIC1Q4ADV7 1423 aa16.36■□□□□ 0.21
HSPG2-213ENST00000498495 RASSF7Q02833 373 aa16.36■□□□□ 0.21
HSPG2-213ENST00000498495 C3orf67Q6ZVT6 689 aa16.36■□□□□ 0.21
HSPG2-213ENST00000498495 C7orf43Q8WVR3 580 aa16.36■□□□□ 0.21
HSPG2-213ENST00000498495 CRAMP1Q96RY5 1269 aa16.36■□□□□ 0.21
HSPG2-213ENST00000498495 CWC25Q9NXE8 425 aaPredicted RBP16.36■□□□□ 0.21
HSPG2-213ENST00000498495 RNF181Q9P0P0 153 aa16.36■□□□□ 0.21
HSPG2-213ENST00000498495 COL11A2P13942 1736 aaPredicted RBP16.36■□□□□ 0.21
HSPG2-213ENST00000498495 ANKRD36CQ5JPF3 1778 aa16.36■□□□□ 0.21
HSPG2-213ENST00000498495 HSP90B1P14625 803 aaKnown RBP16.35■□□□□ 0.21
HSPG2-213ENST00000498495 LMNB1P20700 586 aa16.35■□□□□ 0.21
HSPG2-213ENST00000498495 CCDC93Q567U6 631 aa16.35■□□□□ 0.21
HSPG2-213ENST00000498495 ZBTB38Q8NAP3 1195 aaPredicted RBP16.35■□□□□ 0.21
HSPG2-213ENST00000498495 SLX4Q8IY92 1834 aa16.34■□□□□ 0.21
HSPG2-213ENST00000498495 NFKBIEO00221 500 aa16.34■□□□□ 0.21
HSPG2-213ENST00000498495 IRS4O14654 1257 aaPredicted RBP16.34■□□□□ 0.21
HSPG2-213ENST00000498495 DDX46Q7L014 1031 aaKnown RBP16.34■□□□□ 0.21
HSPG2-213ENST00000498495 ZNF526Q8TF50 670 aaPredicted RBP16.34■□□□□ 0.21
HSPG2-213ENST00000498495 TMX4Q9H1E5 349 aaPredicted RBP16.34■□□□□ 0.21
HSPG2-213ENST00000498495 TAOK3Q9H2K8 898 aa16.34■□□□□ 0.21
HSPG2-213ENST00000498495 PCCAP05165 728 aaPredicted RBP16.33■□□□□ 0.2
HSPG2-213ENST00000498495 CC2D2BQ6DHV5 1058 aa16.33■□□□□ 0.2
HSPG2-213ENST00000498495 RTKN2Q8IZC4 609 aa16.33■□□□□ 0.2
HSPG2-213ENST00000498495 DNAAF4Q8WXU2 420 aa16.33■□□□□ 0.2
HSPG2-213ENST00000498495 GPBP1L1Q9HC44 474 aaPredicted RBP16.33■□□□□ 0.2
HSPG2-213ENST00000498495 ADCY9O60503 1353 aa16.33■□□□□ 0.2
HSPG2-213ENST00000498495 ARFGEF2Q9Y6D5 1785 aa16.33■□□□□ 0.2
HSPG2-213ENST00000498495 PPEF1O14829 653 aaPredicted RBP16.32■□□□□ 0.2
HSPG2-213ENST00000498495 BBOX1O75936 387 aa16.32■□□□□ 0.2
HSPG2-213ENST00000498495 IGKV5-2P06315 115 aa16.32■□□□□ 0.2
HSPG2-213ENST00000498495 SF3B3Q15393 1217 aaKnown RBP16.32■□□□□ 0.2
HSPG2-213ENST00000498495 CWF19L2Q2TBE0 894 aaKnown RBP16.32■□□□□ 0.2
HSPG2-213ENST00000498495 OLFM4Q6UX06 510 aa16.32■□□□□ 0.2
HSPG2-213ENST00000498495 TRMT2AQ8IZ69 625 aaKnown RBP16.32■□□□□ 0.2
HSPG2-213ENST00000498495 JARID2Q92833 1246 aaPredicted RBP16.32■□□□□ 0.2
HSPG2-213ENST00000498495 TNRC6CQ9HCJ0 1690 aaKnown RBP16.32■□□□□ 0.2
HSPG2-213ENST00000498495 LTBP3Q9NS15 1303 aa16.31■□□□□ 0.2
HSPG2-213ENST00000498495 NEURL1BA8MQ27 555 aa16.31■□□□□ 0.2
HSPG2-213ENST00000498495 PRELPP51888 382 aa16.31■□□□□ 0.2
HSPG2-213ENST00000498495 HNRNPUQ00839 825 aaKnown RBP eCLIP16.31■□□□□ 0.2
HSPG2-213ENST00000498495 ABCC4O15439 1325 aa16.3■□□□□ 0.2
HSPG2-213ENST00000498495 CACNA1FO60840 1977 aa16.3■□□□□ 0.2
HSPG2-213ENST00000498495 PDE8AO60658 829 aa16.3■□□□□ 0.2
HSPG2-213ENST00000498495 FKBP4Q02790 459 aaKnown RBP eCLIP16.3■□□□□ 0.2
HSPG2-213ENST00000498495 GRIPAP1Q4V328 841 aa16.3■□□□□ 0.2
HSPG2-213ENST00000498495 LINS1Q8NG48 757 aa16.3■□□□□ 0.2
HSPG2-213ENST00000498495 CACNA1SQ13698 1873 aa16.3■□□□□ 0.2
HSPG2-213ENST00000498495 F6X3S4 739 aa16.29■□□□□ 0.2
HSPG2-213ENST00000498495 GRAPQ13588 217 aa16.29■□□□□ 0.2
HSPG2-213ENST00000498495 MRPL50Q8N5N7 158 aaKnown RBP16.29■□□□□ 0.2
HSPG2-213ENST00000498495 GRAPLQ8TC17 118 aaPredicted RBP16.29■□□□□ 0.2
HSPG2-213ENST00000498495 ATP6V0A2Q9Y487 856 aa16.29■□□□□ 0.2
HSPG2-213ENST00000498495 H7C1W4 665 aa16.28■□□□□ 0.2
HSPG2-213ENST00000498495 CT47B1P0C2W7 299 aaPredicted RBP16.28■□□□□ 0.2
HSPG2-213ENST00000498495 GCKRQ14397 625 aa16.28■□□□□ 0.2
HSPG2-213ENST00000498495 SP8Q8IXZ3 490 aa16.28■□□□□ 0.2
HSPG2-213ENST00000498495 SSH1Q8WYL5 1049 aa16.28■□□□□ 0.2
HSPG2-213ENST00000498495 SBF1O95248 1867 aa16.28■□□□□ 0.2
HSPG2-213ENST00000498495 CDHR2Q9BYE9 1310 aa16.27■□□□□ 0.2
HSPG2-213ENST00000498495 ZC3H4Q9UPT8 1303 aaKnown RBP16.27■□□□□ 0.2
HSPG2-213ENST00000498495 ALDH1L2Q3SY69 923 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms