RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-221ENST00000495755 C3orf67Q6ZVT6 689 aa9.39□□□□□ -0.91
VPS52-221ENST00000495755 PPP1R42Q7Z4L9 355 aa9.39□□□□□ -0.91
VPS52-221ENST00000495755 RBM46Q8TBY0 533 aaKnown RBP9.39□□□□□ -0.91
VPS52-221ENST00000495755 UTP14AQ9BVJ6 771 aaKnown RBP9.39□□□□□ -0.91
VPS52-221ENST00000495755 DBF4Q9UBU7 674 aaPredicted RBP9.39□□□□□ -0.91
VPS52-221ENST00000495755 TNRC6CQ9HCJ0 1690 aaKnown RBP9.39□□□□□ -0.91
VPS52-221ENST00000495755 POTECB2RU33 542 aa9.38□□□□□ -0.91
VPS52-221ENST00000495755 FKBP4Q02790 459 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS52-221ENST00000495755 HSP90AB3PQ58FF7 597 aa9.38□□□□□ -0.91
VPS52-221ENST00000495755 NLRP10Q86W26 655 aa9.38□□□□□ -0.91
VPS52-221ENST00000495755 RTKN2Q8IZC4 609 aa9.38□□□□□ -0.91
VPS52-221ENST00000495755 RNF123Q5XPI4 1314 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 CCDC88AQ3V6T2 1871 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 ANP32CO43423 234 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 VEGFAP15692 232 aaPredicted RBP9.37□□□□□ -0.91
VPS52-221ENST00000495755 CCDC27Q2M243 656 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 NCBP3Q53F19 620 aaKnown RBP9.37□□□□□ -0.91
VPS52-221ENST00000495755 DPY19L2Q6NUT2 758 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 ANKRD13DQ6ZTN6 518 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 C16orf71Q8IYS4 520 aaPredicted RBP9.37□□□□□ -0.91
VPS52-221ENST00000495755 C8orf58Q8NAV2 365 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 PLBD2Q8NHP8 589 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 RPGRQ92834 1020 aaKnown RBP9.37□□□□□ -0.91
VPS52-221ENST00000495755 RBM17Q96I25 401 aaKnown RBP9.37□□□□□ -0.91
VPS52-221ENST00000495755 NLRP3Q96P20 1036 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 CRAMP1Q96RY5 1269 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 HYPKQ9NX55 129 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 SNED1Q8TER0 1413 aa9.37□□□□□ -0.91
VPS52-221ENST00000495755 ELL2O00472 640 aaPredicted RBP9.36□□□□□ -0.91
VPS52-221ENST00000495755 FSTL1Q12841 308 aa9.36□□□□□ -0.91
VPS52-221ENST00000495755 CC2D2BQ6DHV5 1058 aa9.36□□□□□ -0.91
VPS52-221ENST00000495755 SYNE4Q8N205 404 aa9.36□□□□□ -0.91
VPS52-221ENST00000495755 ISCA1Q9BUE6 129 aa9.36□□□□□ -0.91
VPS52-221ENST00000495755 MRS2Q9HD23 443 aa9.36□□□□□ -0.91
VPS52-221ENST00000495755 ZNF277Q9NRM2 450 aaPredicted RBP9.36□□□□□ -0.91
VPS52-221ENST00000495755 DICER1Q9UPY3 1922 aaKnown RBP9.36□□□□□ -0.91
VPS52-221ENST00000495755 TIAM2Q8IVF5 1701 aa9.36□□□□□ -0.91
VPS52-221ENST00000495755 CACNA1SQ13698 1873 aa9.36□□□□□ -0.91
VPS52-221ENST00000495755 DDNO94850 711 aaPredicted RBP9.35□□□□□ -0.91
VPS52-221ENST00000495755 APLP1P51693 650 aa9.35□□□□□ -0.91
VPS52-221ENST00000495755 TRIM28Q13263 835 aaKnown RBP9.35□□□□□ -0.91
VPS52-221ENST00000495755 GRIPAP1Q4V328 841 aa9.35□□□□□ -0.91
VPS52-221ENST00000495755 WWC1Q8IX03 1113 aa9.35□□□□□ -0.91
VPS52-221ENST00000495755 PSMD1Q99460 953 aa9.35□□□□□ -0.91
VPS52-221ENST00000495755 TRMT112Q9UI30 125 aaKnown RBP9.35□□□□□ -0.91
VPS52-221ENST00000495755 SH3TC1Q8TE82 1336 aa9.34□□□□□ -0.91
VPS52-221ENST00000495755 ATP5J2-PTCD1G3V325 749 aa9.34□□□□□ -0.91
VPS52-221ENST00000495755 PPEF1O14829 653 aaPredicted RBP9.34□□□□□ -0.91
VPS52-221ENST00000495755 HCLS1P14317 486 aaPredicted RBP9.34□□□□□ -0.91
VPS52-221ENST00000495755 IARSP41252 1262 aaKnown RBP9.34□□□□□ -0.91
VPS52-221ENST00000495755 SLC51AQ86UW1 340 aa9.34□□□□□ -0.91
VPS52-221ENST00000495755 TSPYL6Q8N831 410 aa9.34□□□□□ -0.91
VPS52-221ENST00000495755 TSR2Q969E8 191 aaKnown RBP9.34□□□□□ -0.91
VPS52-221ENST00000495755 PHAXQ9H814 394 aaKnown RBP9.34□□□□□ -0.91
VPS52-221ENST00000495755 ATP6V0A2Q9Y487 856 aa9.34□□□□□ -0.91
VPS52-221ENST00000495755 WDR90Q96KV7 1748 aa9.34□□□□□ -0.92
VPS52-221ENST00000495755 ABCC4O15439 1325 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 IL16Q14005 1332 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 ANKRD36CQ5JPF3 1778 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 FZD9O00144 591 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 BBOX1O75936 387 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 CCDC30Q5VVM6 783 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 DNAJC5GQ8N7S2 189 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 SMC1BQ8NDV3 1235 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 L3MBTL3Q96JM7 780 aaPredicted RBP9.33□□□□□ -0.92
VPS52-221ENST00000495755 CHMP4AQ9BY43 222 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 PCNTO95613 3336 aa9.33□□□□□ -0.92
VPS52-221ENST00000495755 ZNF541Q9H0D2 1346 aa9.32□□□□□ -0.92
VPS52-221ENST00000495755 TCERG1O14776 1098 aaKnown RBP9.32□□□□□ -0.92
VPS52-221ENST00000495755 GOLGA2Q08379 1002 aa9.32□□□□□ -0.92
VPS52-221ENST00000495755 RIC3Q7Z5B4 369 aa9.32□□□□□ -0.92
VPS52-221ENST00000495755 SP8Q8IXZ3 490 aa9.32□□□□□ -0.92
VPS52-221ENST00000495755 ZNF428Q96B54 188 aa9.32□□□□□ -0.92
VPS52-221ENST00000495755 FAM89AQ96GI7 184 aa9.32□□□□□ -0.92
VPS52-221ENST00000495755 GRAPQ13588 217 aa9.31□□□□□ -0.92
VPS52-221ENST00000495755 SF3B3Q15393 1217 aaKnown RBP9.31□□□□□ -0.92
VPS52-221ENST00000495755 DDX46Q7L014 1031 aaKnown RBP9.31□□□□□ -0.92
VPS52-221ENST00000495755 WDR63Q8IWG1 891 aa9.31□□□□□ -0.92
VPS52-221ENST00000495755 GRAPLQ8TC17 118 aaPredicted RBP9.31□□□□□ -0.92
VPS52-221ENST00000495755 RTFDC1Q9BY42 306 aaPredicted RBP9.31□□□□□ -0.92
VPS52-221ENST00000495755 COL4A5P29400 1685 aa9.31□□□□□ -0.92
VPS52-221ENST00000495755 LAMB2P55268 1798 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 IQCA1LA6NCM1 817 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 HTRA3P83110 453 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 TWISTNBQ3B726 338 aaPredicted RBP9.3□□□□□ -0.92
VPS52-221ENST00000495755 CHADLQ6NUI6 762 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 GPC2Q8N158 579 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 LARGE2Q8N3Y3 721 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 ZBTB38Q8NAP3 1195 aaPredicted RBP9.3□□□□□ -0.92
VPS52-221ENST00000495755 JDP2Q8WYK2 163 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 MYD88Q99836 296 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 METTL22Q9BUU2 404 aaPredicted RBP9.3□□□□□ -0.92
VPS52-221ENST00000495755 TMX4Q9H1E5 349 aaPredicted RBP9.3□□□□□ -0.92
VPS52-221ENST00000495755 VPS33BQ9H267 617 aa9.3□□□□□ -0.92
VPS52-221ENST00000495755 TAF1DQ9H5J8 278 aaPredicted RBP9.3□□□□□ -0.92
VPS52-221ENST00000495755 IRS4O14654 1257 aaPredicted RBP9.29□□□□□ -0.92
VPS52-221ENST00000495755 DDX58O95786 925 aaKnown RBP9.29□□□□□ -0.92
VPS52-221ENST00000495755 PCCAP05165 728 aaPredicted RBP9.29□□□□□ -0.92
VPS52-221ENST00000495755 POTEIP0CG38 1075 aa9.29□□□□□ -0.92
VPS52-221ENST00000495755 POTEJP0CG39 1038 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms