RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 ZNF428Q96B54 188 aa20.42■□□□□ 0.86
LIME1-209ENST00000494776 BRCA1P38398 1863 aaKnown RBP20.41■□□□□ 0.86
LIME1-209ENST00000494776 SLFN5Q08AF3 891 aa20.41■□□□□ 0.86
LIME1-209ENST00000494776 MYD88Q99836 296 aa20.41■□□□□ 0.86
LIME1-209ENST00000494776 ABCC12Q96J65 1359 aa20.41■□□□□ 0.86
LIME1-209ENST00000494776 KLRG2A4D1S0 409 aaPredicted RBP20.4■□□□□ 0.86
LIME1-209ENST00000494776 RNF123Q5XPI4 1314 aa20.4■□□□□ 0.86
LIME1-209ENST00000494776 RPGRQ92834 1020 aaKnown RBP20.4■□□□□ 0.86
LIME1-209ENST00000494776 ISCA1Q9BUE6 129 aa20.4■□□□□ 0.86
LIME1-209ENST00000494776 ZNF219Q9P2Y4 722 aaPredicted RBP20.4■□□□□ 0.86
LIME1-209ENST00000494776 MAP3K2Q9Y2U5 619 aa20.4■□□□□ 0.86
LIME1-209ENST00000494776 ANKRD36CQ5JPF3 1778 aa20.39■□□□□ 0.86
LIME1-209ENST00000494776 DLEC1Q9Y238 1755 aa20.39■□□□□ 0.86
LIME1-209ENST00000494776 SH3TC1Q8TE82 1336 aa20.39■□□□□ 0.85
LIME1-209ENST00000494776 PI4KAP2A4QPH2 592 aa20.39■□□□□ 0.85
LIME1-209ENST00000494776 KSR2Q6VAB6 950 aa20.39■□□□□ 0.85
LIME1-209ENST00000494776 G2E3Q7L622 706 aa20.39■□□□□ 0.85
LIME1-209ENST00000494776 PI4KAP1Q8N8J0 262 aa20.39■□□□□ 0.85
LIME1-209ENST00000494776 CDCA7LQ96GN5 454 aa20.39■□□□□ 0.85
LIME1-209ENST00000494776 NLRP3Q96P20 1036 aa20.39■□□□□ 0.85
LIME1-209ENST00000494776 ALDH1B1P30837 517 aa20.38■□□□□ 0.85
LIME1-209ENST00000494776 NEXNQ0ZGT2 675 aa20.38■□□□□ 0.85
LIME1-209ENST00000494776 FLIIQ13045 1269 aa20.38■□□□□ 0.85
LIME1-209ENST00000494776 FKBP5Q13451 457 aaPredicted RBP20.38■□□□□ 0.85
LIME1-209ENST00000494776 PRPF40BQ6NWY9 871 aaKnown RBP20.38■□□□□ 0.85
LIME1-209ENST00000494776 METTL22Q9BUU2 404 aaPredicted RBP20.38■□□□□ 0.85
LIME1-209ENST00000494776 COL11A2P13942 1736 aaPredicted RBP20.38■□□□□ 0.85
LIME1-209ENST00000494776 ARFGEF2Q9Y6D5 1785 aa20.37■□□□□ 0.85
LIME1-209ENST00000494776 C21orf2O43822 256 aa20.37■□□□□ 0.85
LIME1-209ENST00000494776 HNRNPUQ00839 825 aaKnown RBP eCLIP20.37■□□□□ 0.85
LIME1-209ENST00000494776 TRIM28Q13263 835 aaKnown RBP20.37■□□□□ 0.85
LIME1-209ENST00000494776 ARFGEF1Q9Y6D6 1849 aa20.37■□□□□ 0.85
LIME1-209ENST00000494776 HCLS1P14317 486 aaPredicted RBP20.36■□□□□ 0.85
LIME1-209ENST00000494776 SLC10A5Q5PT55 438 aa20.36■□□□□ 0.85
LIME1-209ENST00000494776 SYNE4Q8N205 404 aa20.36■□□□□ 0.85
LIME1-209ENST00000494776 FAM89AQ96GI7 184 aa20.36■□□□□ 0.85
LIME1-209ENST00000494776 RBM17Q96I25 401 aaKnown RBP20.36■□□□□ 0.85
LIME1-209ENST00000494776 RIC1Q4ADV7 1423 aa20.36■□□□□ 0.85
LIME1-209ENST00000494776 CRY2Q49AN0 593 aa20.35■□□□□ 0.85
LIME1-209ENST00000494776 RTL5Q5HYW3 569 aaPredicted RBP20.35■□□□□ 0.85
LIME1-209ENST00000494776 CCDC191Q8NCU4 936 aa20.35■□□□□ 0.85
LIME1-209ENST00000494776 CWC25Q9NXE8 425 aaPredicted RBP20.35■□□□□ 0.85
LIME1-209ENST00000494776 SOGA3Q5TF21 947 aa20.34■□□□□ 0.85
LIME1-209ENST00000494776 TNRC6CQ9HCJ0 1690 aaKnown RBP20.34■□□□□ 0.85
LIME1-209ENST00000494776 ADCY9O60503 1353 aa20.34■□□□□ 0.85
LIME1-209ENST00000494776 C3orf67Q6ZVT6 689 aa20.33■□□□□ 0.85
LIME1-209ENST00000494776 ZBTB38Q8NAP3 1195 aaPredicted RBP20.33■□□□□ 0.85
LIME1-209ENST00000494776 HSP90B1P14625 803 aaKnown RBP20.32■□□□□ 0.84
LIME1-209ENST00000494776 DNAAF4Q8WXU2 420 aa20.32■□□□□ 0.84
LIME1-209ENST00000494776 IRS4O14654 1257 aaPredicted RBP20.31■□□□□ 0.84
LIME1-209ENST00000494776 HOXA10P31260 410 aaPredicted RBP20.31■□□□□ 0.84
LIME1-209ENST00000494776 RASSF7Q02833 373 aa20.31■□□□□ 0.84
LIME1-209ENST00000494776 C9orf131Q5VYM1 1079 aa20.31■□□□□ 0.84
LIME1-209ENST00000494776 TRMT2AQ8IZ69 625 aaKnown RBP20.31■□□□□ 0.84
LIME1-209ENST00000494776 CRAMP1Q96RY5 1269 aa20.31■□□□□ 0.84
LIME1-209ENST00000494776 RNF181Q9P0P0 153 aa20.31■□□□□ 0.84
LIME1-209ENST00000494776 PCCAP05165 728 aaPredicted RBP20.3■□□□□ 0.84
LIME1-209ENST00000494776 CWF19L2Q2TBE0 894 aaKnown RBP20.3■□□□□ 0.84
LIME1-209ENST00000494776 CCDC93Q567U6 631 aa20.3■□□□□ 0.84
LIME1-209ENST00000494776 DDX46Q7L014 1031 aaKnown RBP20.3■□□□□ 0.84
LIME1-209ENST00000494776 CACNA1SQ13698 1873 aa20.3■□□□□ 0.84
LIME1-209ENST00000494776 SLX4Q8IY92 1834 aa20.3■□□□□ 0.84
LIME1-209ENST00000494776 CACNA1FO60840 1977 aa20.29■□□□□ 0.84
LIME1-209ENST00000494776 IGKV5-2P06315 115 aa20.29■□□□□ 0.84
LIME1-209ENST00000494776 JARID2Q92833 1246 aaPredicted RBP20.29■□□□□ 0.84
LIME1-209ENST00000494776 TMX4Q9H1E5 349 aaPredicted RBP20.29■□□□□ 0.84
LIME1-209ENST00000494776 NEURL1BA8MQ27 555 aa20.28■□□□□ 0.84
LIME1-209ENST00000494776 F6X3S4 739 aa20.28■□□□□ 0.84
LIME1-209ENST00000494776 PPEF1O14829 653 aaPredicted RBP20.28■□□□□ 0.84
LIME1-209ENST00000494776 LMNB1P20700 586 aa20.28■□□□□ 0.84
LIME1-209ENST00000494776 TAOK3Q9H2K8 898 aa20.28■□□□□ 0.84
LIME1-209ENST00000494776 NFKBIEO00221 500 aa20.27■□□□□ 0.84
LIME1-209ENST00000494776 CT47B1P0C2W7 299 aaPredicted RBP20.27■□□□□ 0.84
LIME1-209ENST00000494776 RTKN2Q8IZC4 609 aa20.27■□□□□ 0.84
LIME1-209ENST00000494776 MRPL50Q8N5N7 158 aaKnown RBP20.27■□□□□ 0.84
LIME1-209ENST00000494776 C7orf43Q8WVR3 580 aa20.27■□□□□ 0.84
LIME1-209ENST00000494776 SSH1Q8WYL5 1049 aa20.27■□□□□ 0.84
LIME1-209ENST00000494776 SLC4A10Q6U841 1118 aa20.26■□□□□ 0.83
LIME1-209ENST00000494776 OLFM4Q6UX06 510 aa20.26■□□□□ 0.83
LIME1-209ENST00000494776 LINS1Q8NG48 757 aa20.26■□□□□ 0.83
LIME1-209ENST00000494776 ZNF526Q8TF50 670 aaPredicted RBP20.26■□□□□ 0.83
LIME1-209ENST00000494776 BCL2L13Q9BXK5 485 aa20.26■□□□□ 0.83
LIME1-209ENST00000494776 SMC4Q9NTJ3 1288 aa20.26■□□□□ 0.83
LIME1-209ENST00000494776 ABCC4O15439 1325 aa20.26■□□□□ 0.83
LIME1-209ENST00000494776 PDE8AO60658 829 aa20.25■□□□□ 0.83
LIME1-209ENST00000494776 SF3B3Q15393 1217 aaKnown RBP20.25■□□□□ 0.83
LIME1-209ENST00000494776 ALDH1L2Q3SY69 923 aa20.25■□□□□ 0.83
LIME1-209ENST00000494776 CC2D2BQ6DHV5 1058 aa20.25■□□□□ 0.83
LIME1-209ENST00000494776 BBOX1O75936 387 aa20.24■□□□□ 0.83
LIME1-209ENST00000494776 C1QTNF8P60827 252 aa20.24■□□□□ 0.83
LIME1-209ENST00000494776 GRAPQ13588 217 aa20.24■□□□□ 0.83
LIME1-209ENST00000494776 GCKRQ14397 625 aa20.24■□□□□ 0.83
LIME1-209ENST00000494776 UBE3BQ7Z3V4 1068 aa20.24■□□□□ 0.83
LIME1-209ENST00000494776 GRAPLQ8TC17 118 aaPredicted RBP20.24■□□□□ 0.83
LIME1-209ENST00000494776 GPBP1L1Q9HC44 474 aaPredicted RBP20.24■□□□□ 0.83
LIME1-209ENST00000494776 CDHR2Q9BYE9 1310 aa20.24■□□□□ 0.83
LIME1-209ENST00000494776 FKBP4Q02790 459 aaKnown RBP eCLIP20.23■□□□□ 0.831e-6■■□□□ 11.7
LIME1-209ENST00000494776 PTPRCP08575 1304 aa20.23■□□□□ 0.83
LIME1-209ENST00000494776 LTBP3Q9NS15 1303 aa20.23■□□□□ 0.83
LIME1-209ENST00000494776 DDX60Q8IY21 1712 aaKnown RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms