RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ABCC12Q96J65 1359 aa19.1■□□□□ 0.65
PRPF40A-211ENST00000493468 IBTKQ9P2D0 1353 aaPredicted RBP19.1■□□□□ 0.65
PRPF40A-211ENST00000493468 CCDC85CA6NKD9 419 aa19.1■□□□□ 0.65
PRPF40A-211ENST00000493468 MAP2K2P36507 400 aa19.1■□□□□ 0.65
PRPF40A-211ENST00000493468 PHACTR3Q96KR7 559 aa19.1■□□□□ 0.65
PRPF40A-211ENST00000493468 NYXQ9GZU5 481 aa19.1■□□□□ 0.65
PRPF40A-211ENST00000493468 GJA3Q9Y6H8 435 aa19.1■□□□□ 0.65
PRPF40A-211ENST00000493468 CA12O43570 354 aa19.09■□□□□ 0.65
PRPF40A-211ENST00000493468 GTF2E1P29083 439 aaPredicted RBP19.09■□□□□ 0.65
PRPF40A-211ENST00000493468 HOXA10P31260 410 aaPredicted RBP19.09■□□□□ 0.65
PRPF40A-211ENST00000493468 CST9Q5W186 159 aa19.09■□□□□ 0.65
PRPF40A-211ENST00000493468 CYP4F22Q6NT55 531 aa19.09■□□□□ 0.65
PRPF40A-211ENST00000493468 RSPH6AQ9H0K4 717 aa19.09■□□□□ 0.65
PRPF40A-211ENST00000493468 FAM177BA6PVY3 158 aa19.08■□□□□ 0.64
PRPF40A-211ENST00000493468 PRKAR2BP31323 418 aa19.08■□□□□ 0.64
PRPF40A-211ENST00000493468 EPS15P42566 896 aa19.08■□□□□ 0.64
PRPF40A-211ENST00000493468 HLFQ16534 295 aa19.08■□□□□ 0.64
PRPF40A-211ENST00000493468 PAXIP1Q6ZW49 1069 aaPredicted RBP19.08■□□□□ 0.64
PRPF40A-211ENST00000493468 FMR1Q06787 632 aaKnown RBP eCLIP19.07■□□□□ 0.644e-7■■■■□ 20.8
PRPF40A-211ENST00000493468 LARGE2Q8N3Y3 721 aa19.07■□□□□ 0.64
PRPF40A-211ENST00000493468 CASP8AP2Q9UKL3 1982 aa19.06■□□□□ 0.64
PRPF40A-211ENST00000493468 ERVV-1B6SEH8 477 aa19.06■□□□□ 0.64
PRPF40A-211ENST00000493468 RTF1Q92541 710 aaKnown RBP19.06■□□□□ 0.64
PRPF40A-211ENST00000493468 HHIPL1Q96JK4 782 aa19.06■□□□□ 0.64
PRPF40A-211ENST00000493468 KDM3BQ7LBC6 1761 aa19.06■□□□□ 0.64
PRPF40A-211ENST00000493468 TRAF5O00463 557 aa19.05■□□□□ 0.64
PRPF40A-211ENST00000493468 RPGRQ92834 1020 aaKnown RBP19.05■□□□□ 0.64
PRPF40A-211ENST00000493468 CRAMP1Q96RY5 1269 aa19.05■□□□□ 0.64
PRPF40A-211ENST00000493468 VPS33BQ9H267 617 aa19.05■□□□□ 0.64
PRPF40A-211ENST00000493468 HTATSF1O43719 755 aaKnown RBP19.04■□□□□ 0.64
PRPF40A-211ENST00000493468 BRPF1P55201 1214 aaPredicted RBP19.04■□□□□ 0.64
PRPF40A-211ENST00000493468 SAPCD2Q86UD0 394 aa19.04■□□□□ 0.64
PRPF40A-211ENST00000493468 NIM1KQ8IY84 436 aa19.04■□□□□ 0.64
PRPF40A-211ENST00000493468 ADARB2Q9NS39 739 aaKnown RBP19.04■□□□□ 0.64
PRPF40A-211ENST00000493468 GRM1Q13255 1194 aa19.03■□□□□ 0.64
PRPF40A-211ENST00000493468 MCM10Q7L590 875 aa19.03■□□□□ 0.64
PRPF40A-211ENST00000493468 NUTM1Q86Y26 1132 aa19.03■□□□□ 0.64
PRPF40A-211ENST00000493468 GPRC5DQ9NZD1 345 aa19.03■□□□□ 0.64
PRPF40A-211ENST00000493468 PDE4DIPQ5VU43 2346 aa19.03■□□□□ 0.64
PRPF40A-211ENST00000493468 TNRC18O15417 2968 aaPredicted RBP19.03■□□□□ 0.64
PRPF40A-211ENST00000493468 MAP3K15Q6ZN16 1313 aa19.02■□□□□ 0.64
PRPF40A-211ENST00000493468 CDHR2Q9BYE9 1310 aa19.02■□□□□ 0.64
PRPF40A-211ENST00000493468 PPEF1O14829 653 aaPredicted RBP19.02■□□□□ 0.64
PRPF40A-211ENST00000493468 AOC2O75106 756 aa19.02■□□□□ 0.64
PRPF40A-211ENST00000493468 RBM17Q96I25 401 aaKnown RBP19.02■□□□□ 0.64
PRPF40A-211ENST00000493468 CFAP53Q96M91 514 aa19.02■□□□□ 0.64
PRPF40A-211ENST00000493468 MCOLN1Q9GZU1 580 aa19.02■□□□□ 0.64
PRPF40A-211ENST00000493468 PGAP2Q9UHJ9 254 aa19.01■□□□□ 0.63
PRPF40A-211ENST00000493468 TSKSQ9UJT2 592 aa19.01■□□□□ 0.63
PRPF40A-211ENST00000493468 PPIP5K2O43314 1243 aa19■□□□□ 0.63
PRPF40A-211ENST00000493468 CELF2O95319 508 aaKnown RBP19■□□□□ 0.63
PRPF40A-211ENST00000493468 PCGF6Q9BYE7 350 aa19■□□□□ 0.63
PRPF40A-211ENST00000493468 NUDCQ9Y266 331 aa19■□□□□ 0.63
PRPF40A-211ENST00000493468 DLG5Q8TDM6 1919 aa19■□□□□ 0.63
PRPF40A-211ENST00000493468 UBN2Q6ZU65 1347 aa19■□□□□ 0.63
PRPF40A-211ENST00000493468 TAF7Q15545 349 aaPredicted RBP18.99■□□□□ 0.63
PRPF40A-211ENST00000493468 KIF6Q6ZMV9 814 aa18.99■□□□□ 0.63
PRPF40A-211ENST00000493468 ZC3H15Q8WU90 426 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-211ENST00000493468 RTFDC1Q9BY42 306 aaPredicted RBP18.98■□□□□ 0.63
PRPF40A-211ENST00000493468 ZNRF3Q9ULT6 936 aa18.98■□□□□ 0.63
PRPF40A-211ENST00000493468 ANKRD36CQ5JPF3 1778 aa18.98■□□□□ 0.63
PRPF40A-211ENST00000493468 LAMB2P55268 1798 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 NTSR2O95665 410 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 DCTN1Q14203 1278 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 AOC3Q16853 763 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 SUSD4Q5VX71 490 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 ZNF34Q8IZ26 560 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 SUPT20HQ8NEM7 779 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 ATP6V0A2Q9Y487 856 aa18.97■□□□□ 0.63
PRPF40A-211ENST00000493468 CXCL9Q07325 125 aa18.96■□□□□ 0.63
PRPF40A-211ENST00000493468 SLC51AQ86UW1 340 aa18.96■□□□□ 0.63
PRPF40A-211ENST00000493468 PNISRQ8TF01 805 aaKnown RBP18.96■□□□□ 0.63
PRPF40A-211ENST00000493468 GLIS2Q9BZE0 524 aaPredicted RBP18.96■□□□□ 0.63
PRPF40A-211ENST00000493468 TMX4Q9H1E5 349 aaPredicted RBP18.96■□□□□ 0.63
PRPF40A-211ENST00000493468 U2AF1L5P0DN76 240 aaPredicted RBP18.95■□□□□ 0.62
PRPF40A-211ENST00000493468 GPTP24298 496 aa18.95■□□□□ 0.62
PRPF40A-211ENST00000493468 GMPSP49915 693 aaPredicted RBP18.95■□□□□ 0.62
PRPF40A-211ENST00000493468 U2AF1Q01081 240 aaKnown RBP eCLIP18.95■□□□□ 0.62
PRPF40A-211ENST00000493468 NOGQ13253 232 aa18.95■□□□□ 0.62
PRPF40A-211ENST00000493468 DGKZQ13574 1117 aa18.95■□□□□ 0.62
PRPF40A-211ENST00000493468 TTLL7Q6ZT98 887 aa18.95■□□□□ 0.62
PRPF40A-211ENST00000493468 PARP10Q53GL7 1025 aa18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 CIAPIN1Q6FI81 312 aa18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 GIGYF2Q6Y7W6 1299 aaKnown RBP18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 C3orf67Q6ZVT6 689 aa18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 CDC37L1Q7L3B6 337 aa18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 PPP1R42Q7Z4L9 355 aa18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 CFAP44Q96MT7 982 aa18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 ERBB4Q15303 1308 aa18.94■□□□□ 0.62
PRPF40A-211ENST00000493468 NGEFQ8N5V2 710 aa18.93■□□□□ 0.62
PRPF40A-211ENST00000493468 NLRP3Q96P20 1036 aa18.93■□□□□ 0.62
PRPF40A-211ENST00000493468 ZBTB3Q9H5J0 574 aa18.93■□□□□ 0.62
PRPF40A-211ENST00000493468 LRRC37AA6NMS7 1700 aa18.92■□□□□ 0.62
PRPF40A-211ENST00000493468 TCERG1O14776 1098 aaKnown RBP18.92■□□□□ 0.62
PRPF40A-211ENST00000493468 KIAA2012Q0VF49 1180 aa18.92■□□□□ 0.62
PRPF40A-211ENST00000493468 TNIP1Q15025 636 aa18.92■□□□□ 0.62
PRPF40A-211ENST00000493468 SLC10A5Q5PT55 438 aa18.92■□□□□ 0.62
PRPF40A-211ENST00000493468 ABCC4O15439 1325 aa18.92■□□□□ 0.62
PRPF40A-211ENST00000493468 HIRAP54198 1017 aaPredicted RBP18.91■□□□□ 0.62
PRPF40A-211ENST00000493468 EIF4A1P60842 406 aaKnown RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms