RNA–Protein interactions for RNA: ENST00000492602.5

SEC13-219, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 3

Gene SEC13, Length 393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-219	ENST00000492602	PPP4R3CP	Q6ZMV5	832 aa		7.54	□□□□□ -1.2
SEC13-219	ENST00000492602	NIM1K	Q8IY84	436 aa		7.54	□□□□□ -1.2
SEC13-219	ENST00000492602	WASHC2A	Q641Q2	1341 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	CEP290	O15078	2479 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	FKTN	O75072	461 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	ALDH1B1	P30837	517 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	GMPS	P49915	693 aa	Predicted RBP	7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	SLC39A6	Q13433	755 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	C1orf141	Q5JVX7	400 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	TRPM4	Q8TD43	1214 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	BCL2L13	Q9BXK5	485 aa		7.53	□□□□□ -1.2
SEC13-219	ENST00000492602	KIAA0100	Q14667	2235 aa	Known RBP	7.52	□□□□□ -1.2
SEC13-219	ENST00000492602	RANBP2	P49792	3224 aa	Known RBP	7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	KRT26	Q7Z3Y9	468 aa		7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	NBPF5P	Q86XG9	351 aa	Predicted RBP	7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	RASAL3	Q86YV0	1011 aa		7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	L3MBTL2	Q969R5	705 aa		7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	PUS7	Q96PZ0	661 aa	Known RBP	7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	PRDM6	Q9NQX0	595 aa		7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	TRIM17	Q9Y577	477 aa		7.52	□□□□□ -1.21
SEC13-219	ENST00000492602	PAPPA2	Q9BXP8	1791 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	NPC1L1	Q9UHC9	1359 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	ADM5	C9JUS6	153 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	PPIP5K2	O43314	1243 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	CXCL9	Q07325	125 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	AMOT	Q4VCS5	1084 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	NOM1	Q5C9Z4	860 aa	Known RBP	7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	NPM2	Q86SE8	214 aa	Known RBP	7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	LRCH3	Q96II8	777 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	TMEM106C	Q9BVX2	250 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	UNC80	Q8N2C7	3258 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	CENPF	P49454	3210 aa		7.51	□□□□□ -1.21
SEC13-219	ENST00000492602	KLRG2	A4D1S0	409 aa	Predicted RBP	7.5	□□□□□ -1.21
SEC13-219	ENST00000492602		H7C1D1	291 aa		7.5	□□□□□ -1.21
SEC13-219	ENST00000492602	STARD3NL	O95772	234 aa		7.5	□□□□□ -1.21
SEC13-219	ENST00000492602	COL9A1	P20849	921 aa		7.5	□□□□□ -1.21
SEC13-219	ENST00000492602	CC2D2B	Q6DHV5	1058 aa		7.5	□□□□□ -1.21
SEC13-219	ENST00000492602	CNOT7	Q9UIV1	285 aa	Known RBP	7.5	□□□□□ -1.21
SEC13-219	ENST00000492602	SNED1	Q8TER0	1413 aa		7.5	□□□□□ -1.21
SEC13-219	ENST00000492602	VCAN	P13611	3396 aa		7.5	□□□□□ -1.21
SEC13-219	ENST00000492602	SHTN1	A0MZ66	631 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	FAM177B	A6PVY3	158 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	SOX1	O00570	391 aa	Predicted RBP	7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	TCERG1	O14776	1098 aa	Known RBP	7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	CAMTA2	O94983	1202 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	EIF4A2	Q14240	407 aa	Known RBP	7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	AOC3	Q16853	763 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	TPTE2	Q6XPS3	522 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	OTOP1	Q7RTM1	612 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	VSIG10	Q8N0Z9	540 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	DPF3	Q92784	378 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	DCPS	Q96C86	337 aa	Known RBP	7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	CARD11	Q9BXL7	1154 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	R3HDML	Q9H3Y0	253 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	SLC52A2	Q9HAB3	445 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	ZNRF3	Q9ULT6	936 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	CDHR2	Q9BYE9	1310 aa		7.49	□□□□□ -1.21
SEC13-219	ENST00000492602	LAMA3	Q16787	3333 aa		7.48	□□□□□ -1.21
SEC13-219	ENST00000492602	RAD17	O75943	681 aa		7.48	□□□□□ -1.21
SEC13-219	ENST00000492602	SAMD7	Q7Z3H4	446 aa		7.48	□□□□□ -1.21
SEC13-219	ENST00000492602	MICALL2	Q8IY33	904 aa		7.48	□□□□□ -1.21
SEC13-219	ENST00000492602	ARMC5	Q96C12	935 aa		7.48	□□□□□ -1.21
SEC13-219	ENST00000492602	HTT	P42858	3142 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	GTF2E1	P29083	439 aa	Predicted RBP	7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	IL6ST	P40189	918 aa	Predicted RBP	7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	TNNT2	P45379	298 aa	Predicted RBP	7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	TM4SF4	P48230	202 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	MKRN3	Q13064	507 aa	Known RBP	7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	TNIP1	Q15025	636 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	SLC4A8	Q2Y0W8	1093 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	GRIPAP1	Q4V328	841 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	RBM26	Q5T8P6	1007 aa	Known RBP	7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	ANKRD13D	Q6ZTN6	518 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	SLC51A	Q86UW1	340 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	PRO3102	Q9H379	93 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	LGR6	Q9HBX8	967 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	STXBP5L	Q9Y2K9	1186 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	PTPN22	Q9Y2R2	807 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	SCN7A	Q01118	1682 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	ANKRD26	Q9UPS8	1709 aa		7.47	□□□□□ -1.21
SEC13-219	ENST00000492602	RBBP6	Q7Z6E9	1792 aa	Known RBP	7.46	□□□□□ -1.21
SEC13-219	ENST00000492602	MYC	P01106	439 aa	Predicted RBP	7.46	□□□□□ -1.22
SEC13-219	ENST00000492602	DZIP3	Q86Y13	1208 aa	Known RBP	7.46	□□□□□ -1.22
SEC13-219	ENST00000492602	SULF1	Q8IWU6	871 aa		7.46	□□□□□ -1.22
SEC13-219	ENST00000492602	DEFB123	Q8N688	67 aa		7.46	□□□□□ -1.22
SEC13-219	ENST00000492602	CDCA5	Q96FF9	252 aa		7.46	□□□□□ -1.22
SEC13-219	ENST00000492602	RAPGEFL1	Q9UHV5	662 aa		7.46	□□□□□ -1.22
SEC13-219	ENST00000492602	ZBTB12	Q9Y330	459 aa	Predicted RBP	7.46	□□□□□ -1.22
SEC13-219	ENST00000492602	SPTBN5	Q9NRC6	3674 aa	Known RBP	7.45	□□□□□ -1.22
SEC13-219	ENST00000492602		A0A1W2PPC1	479 aa		7.45	□□□□□ -1.22
SEC13-219	ENST00000492602	WTIP	A6NIX2	430 aa	Predicted RBP	7.45	□□□□□ -1.22
SEC13-219	ENST00000492602	EGFR	P00533	1210 aa		7.45	□□□□□ -1.22
SEC13-219	ENST00000492602	SREBF2	Q12772	1141 aa		7.45	□□□□□ -1.22
SEC13-219	ENST00000492602		Q7L0L9	218 aa		7.45	□□□□□ -1.22
SEC13-219	ENST00000492602	TTC5	Q8N0Z6	440 aa		7.45	□□□□□ -1.22
SEC13-219	ENST00000492602	RPGR	Q92834	1020 aa	Known RBP	7.45	□□□□□ -1.22
SEC13-219	ENST00000492602	ZNF333	Q96JL9	665 aa		7.45	□□□□□ -1.22
SEC13-219	ENST00000492602	CFHR5	Q9BXR6	569 aa		7.45	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms