RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 IGFLR1Q9H665 355 aa9.97□□□□□ -0.81
SCN1A-206ENST00000491429 SELPP16109 830 aa9.96□□□□□ -0.82
SCN1A-206ENST00000491429 PRSS36Q5K4E3 855 aa9.96□□□□□ -0.82
SCN1A-206ENST00000491429 BTLAQ7Z6A9 289 aa9.96□□□□□ -0.82
SCN1A-206ENST00000491429 SIX5Q8N196 739 aa9.96□□□□□ -0.82
SCN1A-206ENST00000491429 UBE2OQ9C0C9 1292 aaKnown RBP9.96□□□□□ -0.82
SCN1A-206ENST00000491429 SLC6A14Q9UN76 642 aa9.96□□□□□ -0.82
SCN1A-206ENST00000491429 A0A0A0MRY4 1105 aa9.95□□□□□ -0.82
SCN1A-206ENST00000491429 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.95□□□□□ -0.82
SCN1A-206ENST00000491429 KRTAP9-2Q9BYQ4 174 aa9.95□□□□□ -0.82
SCN1A-206ENST00000491429 ADGRE1Q14246 886 aa9.94□□□□□ -0.82
SCN1A-206ENST00000491429 MBTPS1Q14703 1052 aa9.94□□□□□ -0.82
SCN1A-206ENST00000491429 NUDT8Q8WV74 236 aa9.94□□□□□ -0.82
SCN1A-206ENST00000491429 NGLY1Q96IV0 654 aa9.94□□□□□ -0.82
SCN1A-206ENST00000491429 JPH1Q9HDC5 661 aaPredicted RBP9.94□□□□□ -0.82
SCN1A-206ENST00000491429 C9orf172C9J069 976 aa9.93□□□□□ -0.82
SCN1A-206ENST00000491429 SHISA2Q6UWI4 295 aa9.93□□□□□ -0.82
SCN1A-206ENST00000491429 C2orf49Q9BVC5 232 aaPredicted RBP9.93□□□□□ -0.82
SCN1A-206ENST00000491429 ATAD2Q6PL18 1390 aa9.92□□□□□ -0.82
SCN1A-206ENST00000491429 ELNP15502 786 aa9.92□□□□□ -0.82
SCN1A-206ENST00000491429 UBTFP17480 764 aaKnown RBP9.92□□□□□ -0.82
SCN1A-206ENST00000491429 CHMP7Q8WUX9 453 aaPredicted RBP9.92□□□□□ -0.82
SCN1A-206ENST00000491429 SCG3Q8WXD2 468 aaKnown RBP9.92□□□□□ -0.82
SCN1A-206ENST00000491429 NAGPAQ9UK23 515 aa9.92□□□□□ -0.82
SCN1A-206ENST00000491429 GSX2Q9BZM3 304 aa9.91□□□□□ -0.82
SCN1A-206ENST00000491429 DNAJB12Q9NXW2 375 aaKnown RBP9.91□□□□□ -0.82
SCN1A-206ENST00000491429 AFF1P51825 1210 aaKnown RBP9.9□□□□□ -0.82
SCN1A-206ENST00000491429 ARTNQ5T4W7 220 aa9.9□□□□□ -0.82
SCN1A-206ENST00000491429 STAG2Q8N3U4 1231 aa9.9□□□□□ -0.82
SCN1A-206ENST00000491429 KRTAP9-6A0A140TA67 174 aa9.89□□□□□ -0.83
SCN1A-206ENST00000491429 RAC1P63000 192 aa9.89□□□□□ -0.83
SCN1A-206ENST00000491429 PSAPL1Q6NUJ1 521 aa9.89□□□□□ -0.83
SCN1A-206ENST00000491429 TXNRD3Q86VQ6 643 aa9.89□□□□□ -0.83
SCN1A-206ENST00000491429 LENG1Q96BZ8 264 aaPredicted RBP9.89□□□□□ -0.83
SCN1A-206ENST00000491429 ZFP64Q9NPA5 681 aa9.89□□□□□ -0.83
SCN1A-206ENST00000491429 RBM19Q9Y4C8 960 aaKnown RBP9.89□□□□□ -0.83
SCN1A-206ENST00000491429 LGR5O75473 907 aa9.88□□□□□ -0.83
SCN1A-206ENST00000491429 NFKB1P19838 968 aa9.88□□□□□ -0.83
SCN1A-206ENST00000491429 RASA1P20936 1047 aa9.88□□□□□ -0.83
SCN1A-206ENST00000491429 GAS2L2Q8NHY3 880 aa9.88□□□□□ -0.83
SCN1A-206ENST00000491429 BCS1LQ9Y276 419 aa9.88□□□□□ -0.83
SCN1A-206ENST00000491429 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.88□□□□□ -0.83
SCN1A-206ENST00000491429 H2AFB1P0C5Y9 115 aa9.87□□□□□ -0.83
SCN1A-206ENST00000491429 H2AFB2P0C5Z0 115 aa9.87□□□□□ -0.83
SCN1A-206ENST00000491429 HIF1AQ16665 826 aa9.87□□□□□ -0.83
SCN1A-206ENST00000491429 DMRTC2Q8IXT2 367 aaPredicted RBP9.87□□□□□ -0.83
SCN1A-206ENST00000491429 PNMA5Q96PV4 448 aa9.87□□□□□ -0.83
SCN1A-206ENST00000491429 GRNP28799 593 aaKnown RBP9.86□□□□□ -0.83
SCN1A-206ENST00000491429 SEC13P55735 322 aa9.86□□□□□ -0.83
SCN1A-206ENST00000491429 FLIIQ13045 1269 aa9.86□□□□□ -0.83
SCN1A-206ENST00000491429 CCINQ13939 588 aa9.86□□□□□ -0.83
SCN1A-206ENST00000491429 ILDR2Q71H61 639 aa9.86□□□□□ -0.83
SCN1A-206ENST00000491429 FMR1NBQ8N0W7 255 aaPredicted RBP9.86□□□□□ -0.83
SCN1A-206ENST00000491429 EFCC1Q9HA90 598 aa9.86□□□□□ -0.83
SCN1A-206ENST00000491429 DMGDHQ9UI17 866 aaKnown RBP9.86□□□□□ -0.83
SCN1A-206ENST00000491429 RGS9O75916 674 aaPredicted RBP9.85□□□□□ -0.83
SCN1A-206ENST00000491429 NRG1Q02297 640 aaPredicted RBP9.85□□□□□ -0.83
SCN1A-206ENST00000491429 RTN1Q16799 776 aa9.85□□□□□ -0.83
SCN1A-206ENST00000491429 IER5Q5VY09 327 aa9.85□□□□□ -0.83
SCN1A-206ENST00000491429 TP53INP1Q96A56 240 aa9.85□□□□□ -0.83
SCN1A-206ENST00000491429 TFIP11Q9UBB9 837 aaKnown RBP9.85□□□□□ -0.83
SCN1A-206ENST00000491429 TGFBR3LH3BV60 316 aa9.84□□□□□ -0.83
SCN1A-206ENST00000491429 USP21Q9UK80 565 aa9.84□□□□□ -0.83
SCN1A-206ENST00000491429 MAFBQ9Y5Q3 323 aaPredicted RBP9.84□□□□□ -0.83
SCN1A-206ENST00000491429 PRKCSHP14314 528 aaPredicted RBP9.83□□□□□ -0.84
SCN1A-206ENST00000491429 FAM35AQ86V20 835 aa9.83□□□□□ -0.84
SCN1A-206ENST00000491429 HINFPQ9BQA5 517 aa9.83□□□□□ -0.84
SCN1A-206ENST00000491429 SSBP4Q9BWG4 385 aaPredicted RBP9.83□□□□□ -0.84
SCN1A-206ENST00000491429 CPB1P15086 417 aa9.82□□□□□ -0.84
SCN1A-206ENST00000491429 GLMNQ92990 594 aa9.82□□□□□ -0.84
SCN1A-206ENST00000491429 PLAURQ03405 335 aa9.81□□□□□ -0.84
SCN1A-206ENST00000491429 CRTC2Q53ET0 693 aaPredicted RBP9.81□□□□□ -0.84
SCN1A-206ENST00000491429 KLK14Q9P0G3 267 aa9.81□□□□□ -0.84
SCN1A-206ENST00000491429 ZFATQ9P243 1243 aa9.81□□□□□ -0.84
SCN1A-206ENST00000491429 INPP5BP32019 993 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 DPYDQ12882 1025 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 GRIK5Q16478 980 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 PERM1Q5SV97 790 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 MSL1Q68DK7 614 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 KRT25Q7Z3Z0 450 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 NBPF11Q86T75 865 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 LPIN3Q9BQK8 851 aa9.8□□□□□ -0.84
SCN1A-206ENST00000491429 ZBTB42B2RXF5 422 aa9.79□□□□□ -0.84
SCN1A-206ENST00000491429 IDH3AP50213 366 aa9.79□□□□□ -0.84
SCN1A-206ENST00000491429 PTK7Q13308 1070 aa9.79□□□□□ -0.84
SCN1A-206ENST00000491429 LRP8Q14114 963 aa9.79□□□□□ -0.84
SCN1A-206ENST00000491429 LARP1Q6PKG0 1096 aaKnown RBP9.79□□□□□ -0.84
SCN1A-206ENST00000491429 CLUAP1Q96AJ1 413 aa9.79□□□□□ -0.84
SCN1A-206ENST00000491429 MAP3K6O95382 1288 aa9.78□□□□□ -0.84
SCN1A-206ENST00000491429 IGFBP4P22692 258 aa9.78□□□□□ -0.84
SCN1A-206ENST00000491429 MLLT1Q03111 559 aaPredicted RBP9.78□□□□□ -0.84
SCN1A-206ENST00000491429 HYAL3O43820 417 aaPredicted RBP9.77□□□□□ -0.85
SCN1A-206ENST00000491429 EPB42P16452 691 aa9.77□□□□□ -0.85
SCN1A-206ENST00000491429 TARSP26639 723 aaKnown RBP9.77□□□□□ -0.85
SCN1A-206ENST00000491429 KANK4Q5T7N3 995 aaPredicted RBP9.77□□□□□ -0.85
SCN1A-206ENST00000491429 DHX32Q7L7V1 743 aaKnown RBP9.77□□□□□ -0.85
SCN1A-206ENST00000491429 FBXO11Q86XK2 927 aa9.77□□□□□ -0.85
SCN1A-206ENST00000491429 FNBP4Q8N3X1 1017 aaPredicted RBP9.77□□□□□ -0.85
SCN1A-206ENST00000491429 WFDC12Q8WWY7 111 aa9.77□□□□□ -0.85
SCN1A-206ENST00000491429 IREB2P48200 963 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms