RNA–Protein interactions for RNA: ENST00000491142.1

HPS4-215, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-215ENST00000491142 RASSF10A6NK89 507 aa11.32□□□□□ -0.6
HPS4-215ENST00000491142 KCNQ3O43525 872 aa11.32□□□□□ -0.6
HPS4-215ENST00000491142 FKBP4Q02790 459 aaKnown RBP eCLIP11.32□□□□□ -0.6
HPS4-215ENST00000491142 NPM2Q86SE8 214 aaKnown RBP11.32□□□□□ -0.6
HPS4-215ENST00000491142 DZIP3Q86Y13 1208 aaKnown RBP11.32□□□□□ -0.6
HPS4-215ENST00000491142 SCN4AP35499 1836 aa11.32□□□□□ -0.6
HPS4-215ENST00000491142 RNF123Q5XPI4 1314 aa11.32□□□□□ -0.6
HPS4-215ENST00000491142 GNAT3A8MTJ3 354 aa11.31□□□□□ -0.6
HPS4-215ENST00000491142 NPR1P16066 1061 aa11.31□□□□□ -0.6
HPS4-215ENST00000491142 NBPF5PQ86XG9 351 aaPredicted RBP11.31□□□□□ -0.6
HPS4-215ENST00000491142 FMNL2Q96PY5 1086 aa11.31□□□□□ -0.6
HPS4-215ENST00000491142 USP16Q9Y5T5 823 aa11.31□□□□□ -0.6
HPS4-215ENST00000491142 WDR33Q9C0J8 1336 aaKnown RBP11.31□□□□□ -0.6
HPS4-215ENST00000491142 PRAMEF22A3QJZ6 481 aa11.3□□□□□ -0.6
HPS4-215ENST00000491142 KLRG2A4D1S0 409 aaPredicted RBP11.3□□□□□ -0.6
HPS4-215ENST00000491142 FZD9O00144 591 aa11.3□□□□□ -0.6
HPS4-215ENST00000491142 MAP2K1Q02750 393 aaPredicted RBP11.3□□□□□ -0.6
HPS4-215ENST00000491142 PNMA8AQ86V59 439 aaPredicted RBP11.3□□□□□ -0.6
HPS4-215ENST00000491142 ABT1Q9ULW3 272 aaKnown RBP11.3□□□□□ -0.6
HPS4-215ENST00000491142 ADAMTSL1Q8N6G6 1762 aa11.29□□□□□ -0.6
HPS4-215ENST00000491142 ARFGEF2Q9Y6D5 1785 aa11.29□□□□□ -0.6
HPS4-215ENST00000491142 FAM177BA6PVY3 158 aa11.29□□□□□ -0.6
HPS4-215ENST00000491142 IARSP41252 1262 aaKnown RBP11.29□□□□□ -0.6
HPS4-215ENST00000491142 FMR1Q06787 632 aaKnown RBP eCLIP11.29□□□□□ -0.6
HPS4-215ENST00000491142 SYNE4Q8N205 404 aa11.29□□□□□ -0.6
HPS4-215ENST00000491142 NUDCQ9Y266 331 aa11.29□□□□□ -0.6
HPS4-215ENST00000491142 BTBD11A6QL63 1104 aa11.28□□□□□ -0.6
HPS4-215ENST00000491142 U2SURPO15042 1029 aaKnown RBP11.28□□□□□ -0.6
HPS4-215ENST00000491142 CNGB1Q14028 1251 aaPredicted RBP11.28□□□□□ -0.6
HPS4-215ENST00000491142 CC2D1BQ5T0F9 858 aaKnown RBP11.28□□□□□ -0.6
HPS4-215ENST00000491142 CLEC4GQ6UXB4 293 aa11.28□□□□□ -0.6
HPS4-215ENST00000491142 RTKN2Q8IZC4 609 aa11.28□□□□□ -0.6
HPS4-215ENST00000491142 GPC2Q8N158 579 aa11.28□□□□□ -0.6
HPS4-215ENST00000491142 GAS2L2Q8NHY3 880 aa11.28□□□□□ -0.6
HPS4-215ENST00000491142 DDX21Q9NR30 783 aaKnown RBP eCLIP11.28□□□□□ -0.6
HPS4-215ENST00000491142 CCDC85CA6NKD9 419 aa11.27□□□□□ -0.61
HPS4-215ENST00000491142 TPTE2Q6XPS3 522 aa11.27□□□□□ -0.61
HPS4-215ENST00000491142 NIP7Q9Y221 180 aaKnown RBP eCLIP11.27□□□□□ -0.61
HPS4-215ENST00000491142 GJA3Q9Y6H8 435 aa11.27□□□□□ -0.61
HPS4-215ENST00000491142 CEMIPQ8WUJ3 1361 aa11.27□□□□□ -0.61
HPS4-215ENST00000491142 SIPA1L3O60292 1781 aaPredicted RBP11.26□□□□□ -0.61
HPS4-215ENST00000491142 BCORQ6W2J9 1755 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 ALDH1B1P30837 517 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 MLLT1Q03111 559 aaPredicted RBP11.26□□□□□ -0.61
HPS4-215ENST00000491142 GRM1Q13255 1194 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 CYP4F22Q6NT55 531 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 PAXIP1Q6ZW49 1069 aaPredicted RBP11.26□□□□□ -0.61
HPS4-215ENST00000491142 PHACTR3Q96KR7 559 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 CAPNS2Q96L46 248 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 RTN4Q9NQC3 1192 aaKnown RBP11.26□□□□□ -0.61
HPS4-215ENST00000491142 TSKSQ9UJT2 592 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 ZNF652Q9Y2D9 606 aa11.26□□□□□ -0.61
HPS4-215ENST00000491142 NBPF26B4DH59 902 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 TRAF5O00463 557 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 CD44P16070 742 aaKnown RBP11.25□□□□□ -0.61
HPS4-215ENST00000491142 PPP2R1AP30153 589 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 EPS15P42566 896 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 RGS19P49795 217 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 HLFQ16534 295 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 CST9Q5W186 159 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 NBPF10Q6P3W6 841 aaKnown RBP11.25□□□□□ -0.61
HPS4-215ENST00000491142 NBPF15Q8N660 670 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 JDP2Q8WYK2 163 aa11.25□□□□□ -0.61
HPS4-215ENST00000491142 GPR101Q96P66 508 aaPredicted RBP11.25□□□□□ -0.61
HPS4-215ENST00000491142 COL3A1P02461 1466 aaPredicted RBP11.25□□□□□ -0.61
HPS4-215ENST00000491142 COL4A5P29400 1685 aa11.24□□□□□ -0.61
HPS4-215ENST00000491142 SNRPA1P09661 255 aaKnown RBP11.24□□□□□ -0.61
HPS4-215ENST00000491142 SCNN1DP51172 638 aa11.24□□□□□ -0.61
HPS4-215ENST00000491142 SLC51AQ86UW1 340 aa11.24□□□□□ -0.61
HPS4-215ENST00000491142 PSMD1Q99460 953 aa11.24□□□□□ -0.61
HPS4-215ENST00000491142 BEGAINQ9BUH8 593 aa11.24□□□□□ -0.61
HPS4-215ENST00000491142 SNED1Q8TER0 1413 aa11.24□□□□□ -0.61
HPS4-215ENST00000491142 LTBP1Q14766 1721 aa11.23□□□□□ -0.61
HPS4-215ENST00000491142 AOC2O75106 756 aa11.23□□□□□ -0.61
HPS4-215ENST00000491142 GTF2E1P29083 439 aaPredicted RBP11.23□□□□□ -0.61
HPS4-215ENST00000491142 LMOD1P29536 600 aaPredicted RBP11.23□□□□□ -0.61
HPS4-215ENST00000491142 ECE1P42892 770 aa11.23□□□□□ -0.61
HPS4-215ENST00000491142 EIF6P56537 245 aaKnown RBP11.23□□□□□ -0.61
HPS4-215ENST00000491142 PRKAR2BP31323 418 aa11.22□□□□□ -0.61
HPS4-215ENST00000491142 CRY2Q49AN0 593 aa11.22□□□□□ -0.61
HPS4-215ENST00000491142 MCM10Q7L590 875 aa11.22□□□□□ -0.61
HPS4-215ENST00000491142 NUTM1Q86Y26 1132 aa11.22□□□□□ -0.61
HPS4-215ENST00000491142 TLL2Q9Y6L7 1015 aa11.22□□□□□ -0.61
HPS4-215ENST00000491142 TNRC18O15417 2968 aaPredicted RBP11.21□□□□□ -0.61
HPS4-215ENST00000491142 ABCC12Q96J65 1359 aa11.21□□□□□ -0.61
HPS4-215ENST00000491142 TCERG1O14776 1098 aaKnown RBP11.21□□□□□ -0.61
HPS4-215ENST00000491142 RGL2O15211 777 aa11.21□□□□□ -0.61
HPS4-215ENST00000491142 DCTN1Q14203 1278 aa11.21□□□□□ -0.61
HPS4-215ENST00000491142 USP50Q70EL3 339 aaPredicted RBP11.21□□□□□ -0.61
HPS4-215ENST00000491142 LARGE2Q8N3Y3 721 aa11.21□□□□□ -0.61
HPS4-215ENST00000491142 RSPH6AQ9H0K4 717 aa11.21□□□□□ -0.61
HPS4-215ENST00000491142 PPP4R2Q9NY27 417 aa11.21□□□□□ -0.61
HPS4-215ENST00000491142 THSD7BQ9C0I4 1608 aa11.2□□□□□ -0.62
HPS4-215ENST00000491142 GABBR2O75899 941 aa11.2□□□□□ -0.62
HPS4-215ENST00000491142 MAP2K2P36507 400 aa11.2□□□□□ -0.62
HPS4-215ENST00000491142 MNX1P50219 401 aaPredicted RBP11.2□□□□□ -0.62
HPS4-215ENST00000491142 CC2D2BQ6DHV5 1058 aa11.2□□□□□ -0.62
HPS4-215ENST00000491142 NGEFQ8N5V2 710 aa11.2□□□□□ -0.62
HPS4-215ENST00000491142 CFAP44Q96MT7 982 aa11.2□□□□□ -0.62
HPS4-215ENST00000491142 MCOLN1Q9GZU1 580 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms