RNA–Protein interactions for RNA: ENST00000489503.5

SMARCD3-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 378 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-213ENST00000489503 MYD88Q99836 296 aa15.76■□□□□ 0.11
SMARCD3-213ENST00000489503 NYXQ9GZU5 481 aa15.76■□□□□ 0.11
SMARCD3-213ENST00000489503 ZNF219Q9P2Y4 722 aaPredicted RBP15.76■□□□□ 0.11
SMARCD3-213ENST00000489503 DDX60Q8IY21 1712 aaKnown RBP15.76■□□□□ 0.11
SMARCD3-213ENST00000489503 SLX4Q8IY92 1834 aa15.75■□□□□ 0.11
SMARCD3-213ENST00000489503 UTRNP46939 3433 aa15.75■□□□□ 0.11
SMARCD3-213ENST00000489503 YY1P25490 414 aa15.75■□□□□ 0.11
SMARCD3-213ENST00000489503 HNRNPUQ00839 825 aaKnown RBP eCLIP15.75■□□□□ 0.11
SMARCD3-213ENST00000489503 ISCA1Q9BUE6 129 aa15.75■□□□□ 0.11
SMARCD3-213ENST00000489503 UTP14AQ9BVJ6 771 aaKnown RBP15.75■□□□□ 0.11
SMARCD3-213ENST00000489503 SRGNP10124 158 aa15.74■□□□□ 0.11
SMARCD3-213ENST00000489503 FLIIQ13045 1269 aa15.74■□□□□ 0.11
SMARCD3-213ENST00000489503 RTL5Q5HYW3 569 aaPredicted RBP15.74■□□□□ 0.11
SMARCD3-213ENST00000489503 PPP1R42Q7Z4L9 355 aa15.74■□□□□ 0.11
SMARCD3-213ENST00000489503 TTLL6Q8N841 843 aa15.74■□□□□ 0.11
SMARCD3-213ENST00000489503 MAP3K2Q9Y2U5 619 aa15.74■□□□□ 0.11
SMARCD3-213ENST00000489503 RIC1Q4ADV7 1423 aa15.74■□□□□ 0.11
SMARCD3-213ENST00000489503 CACNA1FO60840 1977 aa15.73■□□□□ 0.11
SMARCD3-213ENST00000489503 PI4KAP2A4QPH2 592 aa15.73■□□□□ 0.11
SMARCD3-213ENST00000489503 HCLS1P14317 486 aaPredicted RBP15.73■□□□□ 0.11
SMARCD3-213ENST00000489503 ARHGAP27Q6ZUM4 889 aa15.73■□□□□ 0.11
SMARCD3-213ENST00000489503 SLC51AQ86UW1 340 aa15.73■□□□□ 0.11
SMARCD3-213ENST00000489503 PI4KAP1Q8N8J0 262 aa15.73■□□□□ 0.11
SMARCD3-213ENST00000489503 TRMT112Q9UI30 125 aaKnown RBP15.73■□□□□ 0.11
SMARCD3-213ENST00000489503 DDX58O95786 925 aaKnown RBP15.72■□□□□ 0.11
SMARCD3-213ENST00000489503 FKBP5Q13451 457 aaPredicted RBP15.72■□□□□ 0.11
SMARCD3-213ENST00000489503 STYK1Q6J9G0 422 aa15.72■□□□□ 0.11
SMARCD3-213ENST00000489503 PRPF40BQ6NWY9 871 aaKnown RBP15.72■□□□□ 0.11
SMARCD3-213ENST00000489503 JARID2Q92833 1246 aaPredicted RBP15.72■□□□□ 0.11
SMARCD3-213ENST00000489503 MASTLQ96GX5 879 aa15.72■□□□□ 0.11
SMARCD3-213ENST00000489503 CHMP4AQ9BY43 222 aa15.72■□□□□ 0.11
SMARCD3-213ENST00000489503 KLRG2A4D1S0 409 aaPredicted RBP15.71■□□□□ 0.11
SMARCD3-213ENST00000489503 RASSF7Q02833 373 aa15.71■□□□□ 0.11
SMARCD3-213ENST00000489503 KSR2Q6VAB6 950 aa15.71■□□□□ 0.11
SMARCD3-213ENST00000489503 FAM89AQ96GI7 184 aa15.71■□□□□ 0.11
SMARCD3-213ENST00000489503 METTL22Q9BUU2 404 aaPredicted RBP15.71■□□□□ 0.11
SMARCD3-213ENST00000489503 BCL2L13Q9BXK5 485 aa15.71■□□□□ 0.11
SMARCD3-213ENST00000489503 SH3TC1Q8TE82 1336 aa15.7■□□□□ 0.1
SMARCD3-213ENST00000489503 C21orf2O43822 256 aa15.7■□□□□ 0.1
SMARCD3-213ENST00000489503 NPR1P16066 1061 aa15.7■□□□□ 0.1
SMARCD3-213ENST00000489503 OLFM4Q6UX06 510 aa15.7■□□□□ 0.1
SMARCD3-213ENST00000489503 TRMT2AQ8IZ69 625 aaKnown RBP15.7■□□□□ 0.1
SMARCD3-213ENST00000489503 PDZRN3Q9UPQ7 1066 aa15.7■□□□□ 0.1
SMARCD3-213ENST00000489503 COL4A1P02462 1669 aa15.7■□□□□ 0.1
SMARCD3-213ENST00000489503 TAF1P21675 1872 aa15.69■□□□□ 0.1
SMARCD3-213ENST00000489503 F6X3S4 739 aa15.69■□□□□ 0.1
SMARCD3-213ENST00000489503 IGKV5-2P06315 115 aa15.69■□□□□ 0.1
SMARCD3-213ENST00000489503 CWF19L2Q2TBE0 894 aaKnown RBP15.69■□□□□ 0.1
SMARCD3-213ENST00000489503 CRY2Q49AN0 593 aa15.69■□□□□ 0.1
SMARCD3-213ENST00000489503 RPGRQ92834 1020 aaKnown RBP15.69■□□□□ 0.1
SMARCD3-213ENST00000489503 CNKSR1Q969H4 720 aa15.69■□□□□ 0.1
SMARCD3-213ENST00000489503 RNF123Q5XPI4 1314 aa15.68■□□□□ 0.1
SMARCD3-213ENST00000489503 FER1L6Q2WGJ9 1857 aa15.68■□□□□ 0.1
SMARCD3-213ENST00000489503 SSH1Q8WYL5 1049 aa15.68■□□□□ 0.1
SMARCD3-213ENST00000489503 CWC25Q9NXE8 425 aaPredicted RBP15.68■□□□□ 0.1
SMARCD3-213ENST00000489503 SBF1O95248 1867 aa15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 NFKBIEO00221 500 aa15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 PRELPP51888 382 aa15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 TRIM28Q13263 835 aaKnown RBP15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 SLC10A5Q5PT55 438 aa15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 MRPL50Q8N5N7 158 aaKnown RBP15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 DNAAF4Q8WXU2 420 aa15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 NLRP3Q96P20 1036 aa15.67■□□□□ 0.1
SMARCD3-213ENST00000489503 TIAM2Q8IVF5 1701 aa15.66■□□□□ 0.1
SMARCD3-213ENST00000489503 CCDC88AQ3V6T2 1871 aa15.66■□□□□ 0.1
SMARCD3-213ENST00000489503 NEURL1BA8MQ27 555 aa15.66■□□□□ 0.1
SMARCD3-213ENST00000489503 IRS4O14654 1257 aaPredicted RBP15.66■□□□□ 0.1
SMARCD3-213ENST00000489503 NEXNQ0ZGT2 675 aa15.66■□□□□ 0.1
SMARCD3-213ENST00000489503 CCDC191Q8NCU4 936 aa15.66■□□□□ 0.1
SMARCD3-213ENST00000489503 ABCC4O15439 1325 aa15.66■□□□□ 0.1
SMARCD3-213ENST00000489503 C9orf131Q5VYM1 1079 aa15.65■□□□□ 0.1
SMARCD3-213ENST00000489503 ZBTB38Q8NAP3 1195 aaPredicted RBP15.65■□□□□ 0.1
SMARCD3-213ENST00000489503 PCCAP05165 728 aaPredicted RBP15.64■□□□□ 0.09
SMARCD3-213ENST00000489503 HOXA10P31260 410 aaPredicted RBP15.64■□□□□ 0.09
SMARCD3-213ENST00000489503 C7orf43Q8WVR3 580 aa15.64■□□□□ 0.09
SMARCD3-213ENST00000489503 RBM17Q96I25 401 aaKnown RBP15.64■□□□□ 0.09
SMARCD3-213ENST00000489503 SMC4Q9NTJ3 1288 aa15.64■□□□□ 0.09
SMARCD3-213ENST00000489503 RNF181Q9P0P0 153 aa15.64■□□□□ 0.09
SMARCD3-213ENST00000489503 ZBED9Q6R2W3 1325 aa15.64■□□□□ 0.09
SMARCD3-213ENST00000489503 PPEF1O14829 653 aaPredicted RBP15.63■□□□□ 0.09
SMARCD3-213ENST00000489503 ZNF784Q8NCA9 323 aaPredicted RBP15.63■□□□□ 0.09
SMARCD3-213ENST00000489503 ZNF526Q8TF50 670 aaPredicted RBP15.63■□□□□ 0.09
SMARCD3-213ENST00000489503 CCDC85AQ96PX6 553 aaPredicted RBP15.63■□□□□ 0.09
SMARCD3-213ENST00000489503 MYH3P11055 1940 aa15.62■□□□□ 0.09
SMARCD3-213ENST00000489503 SNED1Q8TER0 1413 aa15.62■□□□□ 0.09
SMARCD3-213ENST00000489503 ALDH1B1P30837 517 aa15.62■□□□□ 0.09
SMARCD3-213ENST00000489503 CCDC93Q567U6 631 aa15.62■□□□□ 0.09
SMARCD3-213ENST00000489503 SLC4A10Q6U841 1118 aa15.62■□□□□ 0.09
SMARCD3-213ENST00000489503 UBE3BQ7Z3V4 1068 aa15.62■□□□□ 0.09
SMARCD3-213ENST00000489503 CRAMP1Q96RY5 1269 aa15.62■□□□□ 0.09
SMARCD3-213ENST00000489503 SPEF2Q9C093 1822 aa15.61■□□□□ 0.09
SMARCD3-213ENST00000489503 LRRC37AA6NMS7 1700 aa15.61■□□□□ 0.09
SMARCD3-213ENST00000489503 GCKRQ14397 625 aa15.61■□□□□ 0.09
SMARCD3-213ENST00000489503 BEND3Q5T5X7 828 aa15.61■□□□□ 0.09
SMARCD3-213ENST00000489503 LINS1Q8NG48 757 aa15.61■□□□□ 0.09
SMARCD3-213ENST00000489503 TAOK3Q9H2K8 898 aa15.61■□□□□ 0.09
SMARCD3-213ENST00000489503 CDHR2Q9BYE9 1310 aa15.61■□□□□ 0.09
SMARCD3-213ENST00000489503 SF3B3Q15393 1217 aaKnown RBP15.6■□□□□ 0.09
SMARCD3-213ENST00000489503 ALDH1L2Q3SY69 923 aa15.6■□□□□ 0.09
SMARCD3-213ENST00000489503 DDX46Q7L014 1031 aaKnown RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms