RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 ADAMTSL3P82987 1691 aa15.25■□□□□ 0.03
CLIC4-202ENST00000488683 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.25■□□□□ 0.03
CLIC4-202ENST00000488683 DNM1Q05193 864 aaKnown RBP15.25■□□□□ 0.03
CLIC4-202ENST00000488683 LINS1Q8NG48 757 aa15.25■□□□□ 0.03
CLIC4-202ENST00000488683 SEC62Q99442 399 aaKnown RBP15.25■□□□□ 0.03
CLIC4-202ENST00000488683 DDX21Q9NR30 783 aaKnown RBP eCLIP15.25■□□□□ 0.03
CLIC4-202ENST00000488683 ME3Q16798 604 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 ZNF790Q6PG37 636 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 PDRG1Q9NUG6 133 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 RBM8AQ9Y5S9 174 aaKnown RBP15.24■□□□□ 0.03
CLIC4-202ENST00000488683 C1orf167Q5SNV9 1468 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 PLCB2Q00722 1185 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 G3BP1Q13283 466 aaKnown RBP eCLIP15.24■□□□□ 0.035e-6■■■■□ 22.5
CLIC4-202ENST00000488683 LIMCH1Q9UPQ0 1083 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 SMC3Q9UQE7 1217 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 SCN11AQ9UI33 1791 aa15.24■□□□□ 0.03
CLIC4-202ENST00000488683 STX6O43752 255 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 FOSBP53539 338 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 ZSCAN30Q86W11 494 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 FSD1Q9BTV5 496 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 TPCN1Q9ULQ1 816 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 UTYO14607 1347 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 MSNP26038 577 aaKnown RBP15.23■□□□□ 0.03
CLIC4-202ENST00000488683 LRRC2Q9BYS8 371 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 ALS2Q96Q42 1657 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 UBE3BQ7Z3V4 1068 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 MEGF6O75095 1541 aa15.23■□□□□ 0.03
CLIC4-202ENST00000488683 MBD3O95983 291 aa15.22■□□□□ 0.03
CLIC4-202ENST00000488683 ZSCAN22P10073 491 aaPredicted RBP15.22■□□□□ 0.03
CLIC4-202ENST00000488683 RAPGEF4Q8WZA2 1011 aa15.22■□□□□ 0.03
CLIC4-202ENST00000488683 NPHP3Q7Z494 1330 aa15.22■□□□□ 0.03
CLIC4-202ENST00000488683 WDR33Q9C0J8 1336 aaKnown RBP15.22■□□□□ 0.03
CLIC4-202ENST00000488683 CREB3L3Q68CJ9 461 aa15.22■□□□□ 0.03
CLIC4-202ENST00000488683 GIMAP6Q6P9H5 292 aa15.22■□□□□ 0.03
CLIC4-202ENST00000488683 C17orf53Q8N3J3 647 aaPredicted RBP15.22■□□□□ 0.03
CLIC4-202ENST00000488683 DNAJC2Q99543 621 aaKnown RBP15.22■□□□□ 0.03
CLIC4-202ENST00000488683 SLC52A2Q9HAB3 445 aa15.22■□□□□ 0.03
CLIC4-202ENST00000488683 NEURL1BA8MQ27 555 aa15.21■□□□□ 0.03
CLIC4-202ENST00000488683 HCLS1P14317 486 aaPredicted RBP15.21■□□□□ 0.03
CLIC4-202ENST00000488683 TFCP2Q12800 502 aa15.21■□□□□ 0.03
CLIC4-202ENST00000488683 ERC1Q8IUD2 1116 aa15.21■□□□□ 0.03
CLIC4-202ENST00000488683 ARID3AQ99856 593 aa15.21■□□□□ 0.03
CLIC4-202ENST00000488683 DDX58O95786 925 aaKnown RBP15.21■□□□□ 0.02
CLIC4-202ENST00000488683 EVI5LQ96CN4 794 aa15.21■□□□□ 0.02
CLIC4-202ENST00000488683 PDLIM2Q96JY6 352 aa15.21■□□□□ 0.02
CLIC4-202ENST00000488683 TSPY26PQ9H489 355 aa15.21■□□□□ 0.02
CLIC4-202ENST00000488683 USP25Q9UHP3 1055 aa15.21■□□□□ 0.02
CLIC4-202ENST00000488683 CCDC171Q6TFL3 1326 aa15.2■□□□□ 0.02
CLIC4-202ENST00000488683 A0A0G2JLW4 131 aa15.2■□□□□ 0.02
CLIC4-202ENST00000488683 PHKG2P15735 406 aa15.2■□□□□ 0.02
CLIC4-202ENST00000488683 R3HCC1Q9Y3T6 440 aaKnown RBP15.2■□□□□ 0.02
CLIC4-202ENST00000488683 F13A1P00488 732 aa15.2■□□□□ 0.02
CLIC4-202ENST00000488683 RBM10P98175 930 aaKnown RBP15.2■□□□□ 0.02
CLIC4-202ENST00000488683 NECTIN1Q15223 517 aa15.2■□□□□ 0.02
CLIC4-202ENST00000488683 KIF1AQ12756 1690 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 SLC27A2O14975 620 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 CYP27B1O15528 508 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 GCKRQ14397 625 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 RUFY2Q8WXA3 655 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 GPATCH3Q96I76 525 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 CCDC85AQ96PX6 553 aaPredicted RBP15.19■□□□□ 0.02
CLIC4-202ENST00000488683 CYP46A1Q9Y6A2 500 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 LMTK3Q96Q04 1460 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 CAMK4Q16566 473 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 DDX46Q7L014 1031 aaKnown RBP15.19■□□□□ 0.02
CLIC4-202ENST00000488683 CDC37L1Q7L3B6 337 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 LRP10Q7Z4F1 713 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 DDX11Q96FC9 970 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 TFIP11Q9UBB9 837 aaKnown RBP15.19■□□□□ 0.02
CLIC4-202ENST00000488683 ZNF330Q9Y3S2 320 aaPredicted RBP15.19■□□□□ 0.02
CLIC4-202ENST00000488683 COL15A1P39059 1388 aa15.19■□□□□ 0.02
CLIC4-202ENST00000488683 KCNB2Q92953 911 aa15.18■□□□□ 0.02
CLIC4-202ENST00000488683 ZSWIM6Q9HCJ5 1215 aa15.18■□□□□ 0.02
CLIC4-202ENST00000488683 DBNLQ9UJU6 430 aaKnown RBP15.18■□□□□ 0.02
CLIC4-202ENST00000488683 MTMR6Q9Y217 621 aa15.18■□□□□ 0.02
CLIC4-202ENST00000488683 DBNDD2Q9BQY9 259 aa15.18■□□□□ 0.02
CLIC4-202ENST00000488683 COL18A1P39060 1754 aa15.18■□□□□ 0.02
CLIC4-202ENST00000488683 PTMAP06454 111 aaKnown RBP15.17■□□□□ 0.02
CLIC4-202ENST00000488683 LARP1Q6PKG0 1096 aaKnown RBP15.17■□□□□ 0.02
CLIC4-202ENST00000488683 ANKRD13DQ6ZTN6 518 aa15.17■□□□□ 0.02
CLIC4-202ENST00000488683 C19orf44Q9H6X5 657 aa15.17■□□□□ 0.02
CLIC4-202ENST00000488683 TAOK2Q9UL54 1235 aa15.17■□□□□ 0.02
CLIC4-202ENST00000488683 ZNF594Q96JF6 807 aaPredicted RBP15.17■□□□□ 0.02
CLIC4-202ENST00000488683 TATP17735 454 aaPredicted RBP15.16■□□□□ 0.02
CLIC4-202ENST00000488683 VPS53Q5VIR6 699 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 METTL22Q9BUU2 404 aaPredicted RBP15.16■□□□□ 0.02
CLIC4-202ENST00000488683 AFDNP55196 1824 aaKnown RBP15.16■□□□□ 0.02
CLIC4-202ENST00000488683 MST1RQ04912 1400 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 A0A087WZG4 1122 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 JAK2O60674 1132 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 NEXNQ0ZGT2 675 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 MAP4K1Q92918 833 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 HDAC5Q9UQL6 1122 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.16■□□□□ 0.02
CLIC4-202ENST00000488683 TMEM87AQ8NBN3 555 aa15.16■□□□□ 0.02
CLIC4-202ENST00000488683 AP5Z1O43299 807 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 TIMM10P62072 90 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 PTPN12Q05209 780 aaKnown RBP15.15■□□□□ 0.02
CLIC4-202ENST00000488683 TTLL7Q6ZT98 887 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 TTC5Q8N0Z6 440 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms