RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 ZNF277Q9NRM2 450 aaPredicted RBP16.04■□□□□ 0.16
SDC3-204ENST00000487984 CCDC88AQ3V6T2 1871 aa16.03■□□□□ 0.16
SDC3-204ENST00000487984 APAF1O14727 1248 aa16.03■□□□□ 0.16
SDC3-204ENST00000487984 HOXB7P09629 217 aa16.03■□□□□ 0.16
SDC3-204ENST00000487984 HOXA10P31260 410 aaPredicted RBP16.03■□□□□ 0.16
SDC3-204ENST00000487984 HDGFL1Q5TGJ6 251 aa16.03■□□□□ 0.16
SDC3-204ENST00000487984 RPGRQ92834 1020 aaKnown RBP16.03■□□□□ 0.16
SDC3-204ENST00000487984 UTP14AQ9BVJ6 771 aaKnown RBP16.03■□□□□ 0.16
SDC3-204ENST00000487984 CHPF2Q9P2E5 772 aa16.03■□□□□ 0.16
SDC3-204ENST00000487984 SNED1Q8TER0 1413 aa16.02■□□□□ 0.16
SDC3-204ENST00000487984 WDR90Q96KV7 1748 aa16.02■□□□□ 0.16
SDC3-204ENST00000487984 DDNO94850 711 aaPredicted RBP16.02■□□□□ 0.16
SDC3-204ENST00000487984 HTRA3P83110 453 aa16.02■□□□□ 0.16
SDC3-204ENST00000487984 DNAJC5GQ8N7S2 189 aa16.02■□□□□ 0.16
SDC3-204ENST00000487984 MBIPQ9NS73 344 aa16.02■□□□□ 0.16
SDC3-204ENST00000487984 DICER1Q9UPY3 1922 aaKnown RBP16.02■□□□□ 0.15
SDC3-204ENST00000487984 ZNF853P0CG23 659 aa16.01■□□□□ 0.15
SDC3-204ENST00000487984 HSP90AB3PQ58FF7 597 aa16.01■□□□□ 0.15
SDC3-204ENST00000487984 SLC51AQ86UW1 340 aa16.01■□□□□ 0.15
SDC3-204ENST00000487984 RBM17Q96I25 401 aaKnown RBP16.01■□□□□ 0.15
SDC3-204ENST00000487984 TCIRG1Q13488 830 aa16■□□□□ 0.15
SDC3-204ENST00000487984 SLC10A5Q5PT55 438 aa16■□□□□ 0.15
SDC3-204ENST00000487984 DUSP27Q5VZP5 1158 aa16■□□□□ 0.15
SDC3-204ENST00000487984 NLRP10Q86W26 655 aa16■□□□□ 0.15
SDC3-204ENST00000487984 SYNE4Q8N205 404 aa16■□□□□ 0.15
SDC3-204ENST00000487984 NLRP3Q96P20 1036 aa16■□□□□ 0.15
SDC3-204ENST00000487984 CRAMP1Q96RY5 1269 aa16■□□□□ 0.15
SDC3-204ENST00000487984 PSMD1Q99460 953 aa16■□□□□ 0.15
SDC3-204ENST00000487984 RNF123Q5XPI4 1314 aa15.99■□□□□ 0.15
SDC3-204ENST00000487984 ZNF541Q9H0D2 1346 aa15.99■□□□□ 0.15
SDC3-204ENST00000487984 IARSP41252 1262 aaKnown RBP15.99■□□□□ 0.15
SDC3-204ENST00000487984 CCDC184Q52MB2 194 aa15.99■□□□□ 0.15
SDC3-204ENST00000487984 CC2D2BQ6DHV5 1058 aa15.99■□□□□ 0.15
SDC3-204ENST00000487984 IFT57Q9NWB7 429 aa15.99■□□□□ 0.15
SDC3-204ENST00000487984 PPEF1O14829 653 aaPredicted RBP15.98■□□□□ 0.15
SDC3-204ENST00000487984 L3MBTL3Q96JM7 780 aaPredicted RBP15.98■□□□□ 0.15
SDC3-204ENST00000487984 DBF4Q9UBU7 674 aaPredicted RBP15.98■□□□□ 0.15
SDC3-204ENST00000487984 TCERG1O14776 1098 aaKnown RBP15.97■□□□□ 0.15
SDC3-204ENST00000487984 HCLS1P14317 486 aaPredicted RBP15.97■□□□□ 0.15
SDC3-204ENST00000487984 GNAI1P63096 354 aa15.97■□□□□ 0.15
SDC3-204ENST00000487984 CALD1Q05682 793 aaKnown RBP15.97■□□□□ 0.15
SDC3-204ENST00000487984 PLBD2Q8NHP8 589 aa15.97■□□□□ 0.15
SDC3-204ENST00000487984 TRMT112Q9UI30 125 aaKnown RBP15.97■□□□□ 0.15
SDC3-204ENST00000487984 ABCC4O15439 1325 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 IQCA1LA6NCM1 817 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 FZD9O00144 591 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 POTEIP0CG38 1075 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 POTEJP0CG39 1038 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 ANKRD13DQ6ZTN6 518 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 ZNF428Q96B54 188 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 HYPKQ9NX55 129 aa15.96■□□□□ 0.15
SDC3-204ENST00000487984 SH3TC1Q8TE82 1336 aa15.95■□□□□ 0.14
SDC3-204ENST00000487984 GRIPAP1Q4V328 841 aa15.95■□□□□ 0.14
SDC3-204ENST00000487984 KLRG1Q96E93 195 aa15.95■□□□□ 0.14
SDC3-204ENST00000487984 COL4A5P29400 1685 aa15.95■□□□□ 0.14
SDC3-204ENST00000487984 ELL2O00472 640 aaPredicted RBP15.94■□□□□ 0.14
SDC3-204ENST00000487984 CHADLQ6NUI6 762 aa15.94■□□□□ 0.14
SDC3-204ENST00000487984 JDP2Q8WYK2 163 aa15.94■□□□□ 0.14
SDC3-204ENST00000487984 ISCA1Q9BUE6 129 aa15.94■□□□□ 0.14
SDC3-204ENST00000487984 TAF1DQ9H5J8 278 aaPredicted RBP15.94■□□□□ 0.14
SDC3-204ENST00000487984 ATP6V0A2Q9Y487 856 aa15.94■□□□□ 0.14
SDC3-204ENST00000487984 ANKRD36CQ5JPF3 1778 aa15.94■□□□□ 0.14
SDC3-204ENST00000487984 ATP5J2-PTCD1G3V325 749 aa15.93■□□□□ 0.14
SDC3-204ENST00000487984 LARGE2Q8N3Y3 721 aa15.93■□□□□ 0.14
SDC3-204ENST00000487984 C8orf58Q8NAV2 365 aa15.93■□□□□ 0.14
SDC3-204ENST00000487984 DDX46Q7L014 1031 aaKnown RBP15.92■□□□□ 0.14
SDC3-204ENST00000487984 GPC2Q8N158 579 aa15.92■□□□□ 0.14
SDC3-204ENST00000487984 FAM89AQ96GI7 184 aa15.92■□□□□ 0.14
SDC3-204ENST00000487984 TMX4Q9H1E5 349 aaPredicted RBP15.92■□□□□ 0.14
SDC3-204ENST00000487984 PHAXQ9H814 394 aaKnown RBP15.92■□□□□ 0.14
SDC3-204ENST00000487984 HACL1Q9UJ83 578 aa15.92■□□□□ 0.14
SDC3-204ENST00000487984 ZNF316A6NFI3 1004 aaPredicted RBP15.91■□□□□ 0.14
SDC3-204ENST00000487984 BBOX1O75936 387 aa15.91■□□□□ 0.14
SDC3-204ENST00000487984 EIF6P56537 245 aaKnown RBP15.91■□□□□ 0.14
SDC3-204ENST00000487984 GOLGA2Q08379 1002 aa15.91■□□□□ 0.14
SDC3-204ENST00000487984 GRAPQ13588 217 aa15.91■□□□□ 0.14
SDC3-204ENST00000487984 LDHDQ86WU2 507 aa15.91■□□□□ 0.14
SDC3-204ENST00000487984 JMYQ8N9B5 988 aa15.91■□□□□ 0.14
SDC3-204ENST00000487984 GRAPLQ8TC17 118 aaPredicted RBP15.91■□□□□ 0.14
SDC3-204ENST00000487984 PPIP5K2O43314 1243 aa15.9■□□□□ 0.14
SDC3-204ENST00000487984 EPHX2P34913 555 aa15.9■□□□□ 0.14
SDC3-204ENST00000487984 TRIM28Q13263 835 aaKnown RBP15.9■□□□□ 0.14
SDC3-204ENST00000487984 AOC3Q16853 763 aa15.9■□□□□ 0.14
SDC3-204ENST00000487984 EAPPQ56P03 285 aaPredicted RBP15.9■□□□□ 0.14
SDC3-204ENST00000487984 RIC3Q7Z5B4 369 aa15.9■□□□□ 0.14
SDC3-204ENST00000487984 SP8Q8IXZ3 490 aa15.9■□□□□ 0.14
SDC3-204ENST00000487984 RTFDC1Q9BY42 306 aaPredicted RBP15.9■□□□□ 0.14
SDC3-204ENST00000487984 CCDC27Q2M243 656 aa15.89■□□□□ 0.13
SDC3-204ENST00000487984 RTL5Q5HYW3 569 aaPredicted RBP15.89■□□□□ 0.13
SDC3-204ENST00000487984 DPP8Q6V1X1 898 aaPredicted RBP15.89■□□□□ 0.13
SDC3-204ENST00000487984 NIM1KQ8IY84 436 aa15.89■□□□□ 0.13
SDC3-204ENST00000487984 TSPYL6Q8N831 410 aa15.89■□□□□ 0.13
SDC3-204ENST00000487984 TSR2Q969E8 191 aaKnown RBP15.89■□□□□ 0.13
SDC3-204ENST00000487984 MRS2Q9HD23 443 aa15.89■□□□□ 0.13
SDC3-204ENST00000487984 GJA3Q9Y6H8 435 aa15.89■□□□□ 0.13
SDC3-204ENST00000487984 SCN4AP35499 1836 aa15.89■□□□□ 0.13
SDC3-204ENST00000487984 LAMB2P55268 1798 aa15.88■□□□□ 0.13
SDC3-204ENST00000487984 ANP32CO43423 234 aa15.88■□□□□ 0.13
SDC3-204ENST00000487984 CCDC30Q5VVM6 783 aa15.88■□□□□ 0.13
SDC3-204ENST00000487984 WWC1Q8IX03 1113 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms