RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 NFX1Q12986 1120 aaKnown RBP9.68□□□□□ -0.86
USP48-209ENST00000487880 FOXR1Q6PIV2 292 aa9.68□□□□□ -0.86
USP48-209ENST00000487880 GPR161Q8N6U8 529 aaKnown RBP9.68□□□□□ -0.86
USP48-209ENST00000487880 GPR25O00155 361 aa9.67□□□□□ -0.86
USP48-209ENST00000487880 KHNYNO15037 678 aaKnown RBP9.67□□□□□ -0.86
USP48-209ENST00000487880 WFS1O76024 890 aa9.67□□□□□ -0.86
USP48-209ENST00000487880 GAS6Q14393 721 aa9.67□□□□□ -0.86
USP48-209ENST00000487880 TRERF1Q96PN7 1200 aa9.67□□□□□ -0.86
USP48-209ENST00000487880 STRN4Q9NRL3 753 aa9.67□□□□□ -0.86
USP48-209ENST00000487880 PHF24Q9UPV7 400 aa9.67□□□□□ -0.86
USP48-209ENST00000487880 LCE2CQ5TA81 110 aa9.66□□□□□ -0.86
USP48-209ENST00000487880 SLC16A10Q8TF71 515 aa9.66□□□□□ -0.86
USP48-209ENST00000487880 RTCBQ9Y3I0 505 aaKnown RBP9.66□□□□□ -0.86
USP48-209ENST00000487880 EPB42P16452 691 aa9.65□□□□□ -0.86
USP48-209ENST00000487880 FGFR3P22607 806 aa9.65□□□□□ -0.86
USP48-209ENST00000487880 MZF1P28698 734 aaPredicted RBP9.65□□□□□ -0.86
USP48-209ENST00000487880 SFSWAPQ12872 951 aaKnown RBP9.65□□□□□ -0.86
USP48-209ENST00000487880 FAM182BQ5T319 152 aa9.65□□□□□ -0.86
USP48-209ENST00000487880 C11orf16Q9NQ32 467 aa9.65□□□□□ -0.86
USP48-209ENST00000487880 FAM13BQ9NYF5 915 aa9.65□□□□□ -0.86
USP48-209ENST00000487880 BIN2Q9UBW5 565 aaPredicted RBP9.65□□□□□ -0.86
USP48-209ENST00000487880 PDGFAP04085 211 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 CD33P20138 364 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 RGL4Q8IZJ4 473 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 GPR152Q8TDT2 470 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 IRF7Q92985 503 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 CCDC87Q9NVE4 849 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 KCNH4Q9UQ05 1017 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 KCNMB2Q9Y691 235 aa9.64□□□□□ -0.87
USP48-209ENST00000487880 TRIP4Q15650 581 aaPredicted RBP9.63□□□□□ -0.87
USP48-209ENST00000487880 PIK3R5Q8WYR1 880 aa9.63□□□□□ -0.87
USP48-209ENST00000487880 EDEM1Q92611 657 aa9.63□□□□□ -0.87
USP48-209ENST00000487880 MARK1Q9P0L2 795 aa9.63□□□□□ -0.87
USP48-209ENST00000487880 USP20Q9Y2K6 914 aa9.63□□□□□ -0.87
USP48-209ENST00000487880 EGFRP00533 1210 aa9.62□□□□□ -0.87
USP48-209ENST00000487880 DNM1Q05193 864 aaKnown RBP9.62□□□□□ -0.87
USP48-209ENST00000487880 GRIN2CQ14957 1233 aa9.62□□□□□ -0.87
USP48-209ENST00000487880 GJD3Q8N144 294 aa9.62□□□□□ -0.87
USP48-209ENST00000487880 NUDT16Q96DE0 195 aaKnown RBP9.62□□□□□ -0.87
USP48-209ENST00000487880 POLIQ9UNA4 740 aa9.62□□□□□ -0.87
USP48-209ENST00000487880 CTBSQ01459 385 aa9.61□□□□□ -0.87
USP48-209ENST00000487880 RNFT1Q5M7Z0 435 aa9.61□□□□□ -0.87
USP48-209ENST00000487880 CITED4Q96RK1 184 aa9.61□□□□□ -0.87
USP48-209ENST00000487880 RBCK1Q9BYM8 510 aa9.61□□□□□ -0.87
USP48-209ENST00000487880 DCTN4Q9UJW0 460 aa9.61□□□□□ -0.87
USP48-209ENST00000487880 BRPF3Q9ULD4 1205 aa9.61□□□□□ -0.87
USP48-209ENST00000487880 C2CD2LO14523 706 aa9.6□□□□□ -0.87
USP48-209ENST00000487880 NDUFB5O43674 189 aa9.6□□□□□ -0.87
USP48-209ENST00000487880 USP5P45974 858 aa9.6□□□□□ -0.87
USP48-209ENST00000487880 KRT76Q01546 638 aa9.6□□□□□ -0.87
USP48-209ENST00000487880 AAMPQ13685 434 aa9.6□□□□□ -0.87
USP48-209ENST00000487880 COL25A1Q9BXS0 654 aaPredicted RBP9.6□□□□□ -0.87
USP48-209ENST00000487880 GSX2Q9BZM3 304 aa9.6□□□□□ -0.87
USP48-209ENST00000487880 IGHA2P01877 340 aa9.59□□□□□ -0.87
USP48-209ENST00000487880 RPLP1P05386 114 aaKnown RBP9.59□□□□□ -0.87
USP48-209ENST00000487880 MARSP56192 900 aaKnown RBP9.59□□□□□ -0.87
USP48-209ENST00000487880 SPEM2Q0P670 501 aa9.59□□□□□ -0.87
USP48-209ENST00000487880 CMTR1Q8N1G2 835 aaKnown RBP9.59□□□□□ -0.87
USP48-209ENST00000487880 SLC30A3Q99726 388 aa9.59□□□□□ -0.87
USP48-209ENST00000487880 MBIPQ9NS73 344 aa9.59□□□□□ -0.87
USP48-209ENST00000487880 XYLBO75191 536 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 PCSK2P16519 638 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 MX2P20592 715 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 CCINQ13939 588 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 CCDC27Q2M243 656 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 TMCO4Q5TGY1 634 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 FAM129BQ96TA1 746 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 GGNBP2Q9H3C7 697 aa9.58□□□□□ -0.88
USP48-209ENST00000487880 UBAP1LF5GYI3 381 aa9.57□□□□□ -0.88
USP48-209ENST00000487880 MAPK1P28482 360 aa9.57□□□□□ -0.88
USP48-209ENST00000487880 EFCC1Q9HA90 598 aa9.57□□□□□ -0.88
USP48-209ENST00000487880 FNDC3AQ9Y2H6 1198 aaKnown RBP9.57□□□□□ -0.88
USP48-209ENST00000487880 WIPF1O43516 503 aa9.56□□□□□ -0.88
USP48-209ENST00000487880 BMP4P12644 408 aa9.56□□□□□ -0.88
USP48-209ENST00000487880 ZNF468Q5VIY5 522 aaPredicted RBP9.56□□□□□ -0.88
USP48-209ENST00000487880 PDE12Q6L8Q7 609 aaKnown RBP9.56□□□□□ -0.88
USP48-209ENST00000487880 XKR5Q6UX68 686 aa9.56□□□□□ -0.88
USP48-209ENST00000487880 DNAJC14Q6Y2X3 702 aaPredicted RBP9.56□□□□□ -0.88
USP48-209ENST00000487880 GMPRP36959 345 aa9.55□□□□□ -0.88
USP48-209ENST00000487880 TMC7Q7Z402 723 aa9.55□□□□□ -0.88
USP48-209ENST00000487880 ASB16Q96NS5 453 aa9.55□□□□□ -0.88
USP48-209ENST00000487880 AVENQ9NQS1 362 aaPredicted RBP9.55□□□□□ -0.88
USP48-209ENST00000487880 IGF1RP08069 1367 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 GPR182O15218 404 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 MAP3K6O95382 1288 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 MAP2K3P46734 347 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 INSM1Q01101 510 aaPredicted RBP9.54□□□□□ -0.88
USP48-209ENST00000487880 SRSF11Q05519 484 aaKnown RBP9.54□□□□□ -0.88
USP48-209ENST00000487880 EHHADHQ08426 723 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 PDE3BQ13370 1112 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 ZFATQ9P243 1243 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 STK17AQ9UEE5 414 aa9.54□□□□□ -0.88
USP48-209ENST00000487880 NSFL1CQ9UNZ2 370 aaKnown RBP9.54□□□□□ -0.88
USP48-209ENST00000487880 A6NHS1 94 aa9.53□□□□□ -0.88
USP48-209ENST00000487880 SASH3O75995 380 aa9.53□□□□□ -0.88
USP48-209ENST00000487880 ARAFP10398 606 aa9.53□□□□□ -0.88
USP48-209ENST00000487880 C8orf34Q49A92 452 aa9.53□□□□□ -0.88
USP48-209ENST00000487880 RAB44Q7Z6P3 723 aaPredicted RBP9.53□□□□□ -0.88
USP48-209ENST00000487880 NLRP13Q86W25 1043 aa9.53□□□□□ -0.88
USP48-209ENST00000487880 DMRTB1Q96MA1 342 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms