RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 CAVIN2O95810 425 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 COL9A3Q14050 684 aaPredicted RBP12.53□□□□□ -0.4
CCDC171-208ENST00000486641 EIF4A2Q14240 407 aaKnown RBP12.53□□□□□ -0.4
CCDC171-208ENST00000486641 CCDC93Q567U6 631 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 LARP1Q6PKG0 1096 aaKnown RBP12.53□□□□□ -0.4
CCDC171-208ENST00000486641 NEK11Q8NG66 645 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 RHPN1Q8TCX5 695 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 SSH3Q8TE77 659 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 COG3Q96JB2 828 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 TSPYL4Q9UJ04 414 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 PPP6R1Q9UPN7 881 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 FLIIQ13045 1269 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 SNW1Q13573 536 aaKnown RBP12.53□□□□□ -0.4
CCDC171-208ENST00000486641 WAPLQ7Z5K2 1190 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 CERS3Q8IU89 383 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 NFATC2IPQ8NCF5 419 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 KCNB2Q92953 911 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 USP44Q9H0E7 712 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 KIF2AO00139 706 aaPredicted RBP12.52□□□□□ -0.41
CCDC171-208ENST00000486641 POLR3GO15318 223 aaPredicted RBP12.52□□□□□ -0.41
CCDC171-208ENST00000486641 RAB11FIP3O75154 756 aa12.52□□□□□ -0.41
CCDC171-208ENST00000486641 PDCP20941 246 aa12.52□□□□□ -0.41
CCDC171-208ENST00000486641 ARHGAP29Q52LW3 1261 aa12.52□□□□□ -0.41
CCDC171-208ENST00000486641 SYT10Q6XYQ8 523 aa12.52□□□□□ -0.41
CCDC171-208ENST00000486641 STK31Q9BXU1 1019 aa12.52□□□□□ -0.41
CCDC171-208ENST00000486641 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.51□□□□□ -0.41
CCDC171-208ENST00000486641 ZRANB2O95218 330 aaKnown RBP eCLIP12.51□□□□□ -0.41
CCDC171-208ENST00000486641 NECTIN1Q15223 517 aa12.51□□□□□ -0.41
CCDC171-208ENST00000486641 TAF7LQ5H9L4 462 aa12.51□□□□□ -0.41
CCDC171-208ENST00000486641 E4F1Q66K89 784 aaPredicted RBP12.51□□□□□ -0.41
CCDC171-208ENST00000486641 NECTIN2Q92692 538 aa12.51□□□□□ -0.41
CCDC171-208ENST00000486641 EDC4Q6P2E9 1401 aaKnown RBP12.51□□□□□ -0.41
CCDC171-208ENST00000486641 A0A087WWV3 80 aa12.51□□□□□ -0.41
CCDC171-208ENST00000486641 PPP1R42Q7Z4L9 355 aa12.51□□□□□ -0.41
CCDC171-208ENST00000486641 DHX40Q8IX18 779 aaKnown RBP12.51□□□□□ -0.41
CCDC171-208ENST00000486641 MYO5BQ9ULV0 1848 aa12.51□□□□□ -0.41
CCDC171-208ENST00000486641 ARHGEF10O15013 1369 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 FOXO3O43524 673 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 UBTFL1P0CB47 393 aaPredicted RBP12.5□□□□□ -0.41
CCDC171-208ENST00000486641 ST5P78524 1137 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 TEX35Q5T0J7 233 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 PPP1R13BQ96KQ4 1090 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 STAG3Q9UJ98 1225 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.5□□□□□ -0.41
CCDC171-208ENST00000486641 BECN2A8MW95 431 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 KRBA2Q6ZNG9 492 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 TCEANC2Q96MN5 208 aa12.5□□□□□ -0.41
CCDC171-208ENST00000486641 SETD1AO15047 1707 aaKnown RBP12.5□□□□□ -0.41
CCDC171-208ENST00000486641 XRN1Q8IZH2 1706 aaKnown RBP12.5□□□□□ -0.41
CCDC171-208ENST00000486641 STX1AQ16623 288 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 NBPF11Q86T75 865 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 TXLNBQ8N3L3 684 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 RUFY2Q8WXA3 655 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 SMARCE1Q969G3 411 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 ZCCHC17Q9NP64 241 aaKnown RBP12.49□□□□□ -0.41
CCDC171-208ENST00000486641 ADCY9O60503 1353 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 ZKSCAN1P17029 563 aaPredicted RBP12.49□□□□□ -0.41
CCDC171-208ENST00000486641 TPM4P67936 248 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 POLA2Q14181 598 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 MUM1L1Q5H9M0 696 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 CREB3L3Q68CJ9 461 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 TMCO3Q6UWJ1 677 aa12.49□□□□□ -0.41
CCDC171-208ENST00000486641 ORC3Q9UBD5 711 aaPredicted RBP12.49□□□□□ -0.41
CCDC171-208ENST00000486641 ADGRL3Q9HAR2 1447 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 IRX3P78415 501 aaPredicted RBP12.48□□□□□ -0.41
CCDC171-208ENST00000486641 STK3Q13188 491 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 GORABQ5T7V8 394 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 RBM8AQ9Y5S9 174 aaKnown RBP12.48□□□□□ -0.41
CCDC171-208ENST00000486641 CPS1P31327 1500 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 SEC31AO94979 1220 aaKnown RBP12.48□□□□□ -0.41
CCDC171-208ENST00000486641 TNNT3P45378 269 aaPredicted RBP12.48□□□□□ -0.41
CCDC171-208ENST00000486641 GSDMDP57764 484 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 DDX11Q96FC9 970 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 ZFP91Q96JP5 570 aaPredicted RBP12.48□□□□□ -0.41
CCDC171-208ENST00000486641 UBXN6Q9BZV1 441 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 OSBPL5Q9H0X9 879 aaPredicted RBP12.48□□□□□ -0.41
CCDC171-208ENST00000486641 RSPH14Q9UHP6 348 aa12.48□□□□□ -0.41
CCDC171-208ENST00000486641 NCKAP5LQ9HCH0 1330 aa12.47□□□□□ -0.41
CCDC171-208ENST00000486641 GIGYF1O75420 1035 aaPredicted RBP12.47□□□□□ -0.41
CCDC171-208ENST00000486641 CEBPZQ03701 1054 aaKnown RBP12.47□□□□□ -0.41
CCDC171-208ENST00000486641 CCDC30Q5VVM6 783 aa12.47□□□□□ -0.41
CCDC171-208ENST00000486641 UBXN4Q92575 508 aa12.47□□□□□ -0.41
CCDC171-208ENST00000486641 ARGLU1Q9NWB6 273 aaPredicted RBP12.47□□□□□ -0.41
CCDC171-208ENST00000486641 LCMT1Q9UIC8 334 aa12.47□□□□□ -0.41
CCDC171-208ENST00000486641 ALKQ9UM73 1620 aa12.47□□□□□ -0.41
CCDC171-208ENST00000486641 PSDA5PKW4 1024 aaPredicted RBP12.46□□□□□ -0.41
CCDC171-208ENST00000486641 SRGAP3O43295 1099 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 GLRX3O76003 335 aaKnown RBP12.46□□□□□ -0.41
CCDC171-208ENST00000486641 RESTQ13127 1097 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 MTHFSDQ2M296 383 aaKnown RBP12.46□□□□□ -0.41
CCDC171-208ENST00000486641 ARMCX5Q6P1M9 558 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 AOPEPQ8N6M6 819 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 ZBTB9Q96C00 473 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 RASSF4Q9H2L5 321 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 SLC52A1Q9NWF4 448 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 CRYBG1Q9Y4K1 1723 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 CHD2O14647 1828 aaKnown RBP12.46□□□□□ -0.41
CCDC171-208ENST00000486641 SLC27A2O14975 620 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 TRIM66O15016 1216 aa12.46□□□□□ -0.41
CCDC171-208ENST00000486641 TOB2Q14106 344 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms